View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6132_high_20 (Length: 306)
Name: NF6132_high_20
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_20 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: scaffold0425 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 38 - 287
Target Start/End: Complemental strand, 11805 - 11556
Alignment:
| Q |
38 |
gtaagaatcattgtaagagtcattggttgttccaaacaccatggaagctcccatccaccatgaggacagtggttttttctctagttggatgtcattgaat |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11805 |
gtaagaatcattgtaagagtcattggttgttccaaacaccatggaagctcccatccaccatgaggacagtggttttttctcaagttggatgtcattgaat |
11706 |
T |
|
| Q |
138 |
ccaccaaaattcccttaaacaacaaagtggcatgtcattcaattttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggcca |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11705 |
ccaccaaaattcccttaaacaacaaagtggcatgtcattcaattttttatcacttaacaattaaaaatattaataaaatgaaaatcacggtaaaaggcca |
11606 |
T |
|
| Q |
238 |
catgacatcctcaccatgtaattggttaatgcaattaattcatcggcttc |
287 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11605 |
catgacatcctcaccatgtaattggttgatgcaattaattcatcggcttc |
11556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 38 - 287
Target Start/End: Complemental strand, 6527098 - 6526849
Alignment:
| Q |
38 |
gtaagaatcattgtaagagtcattggttgttccaaacaccatggaagctcccatccaccatgaggacagtggttttttctctagttggatgtcattgaat |
137 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6527098 |
gtaaaaatcattggaagagtcattggttgttccaaacaccatggaagctctcatccaccatgaggacagtggttttttctcaagttggatgtcattgaat |
6526999 |
T |
|
| Q |
138 |
ccaccaaaattcccttaaacaacaaagtggcatgtcattcaattttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggcca |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6526998 |
ccaccaaaattcccttaaacaacaaagtggcatgtcattcaattttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggcca |
6526899 |
T |
|
| Q |
238 |
catgacatcctcaccatgtaattggttaatgcaattaattcatcggcttc |
287 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6526898 |
catgacatcctcaccatgtaattggttgatgcaattaattcatcggcttc |
6526849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 38 - 287
Target Start/End: Complemental strand, 6848679 - 6848429
Alignment:
| Q |
38 |
gtaagaatcattgtaagagtcattggttgttccaaacaccatggaagctcccatccaccatgaggacagtggttttttctctagttggatgtcattgaat |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6848679 |
gtaagaatcattgtaagagtcattggttgttccaaacaccatggaagatcccatccaccatgaggacagtggttttttctcaagttggatgtcattgaat |
6848580 |
T |
|
| Q |
138 |
ccaccaaaattcccttaaacaacaaagtggcatgtcattcaatt-ttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggcc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6848579 |
ccaccaaaattcccttaaacaacaaagtggcatgtcattcaatttttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggcc |
6848480 |
T |
|
| Q |
237 |
acatgacatcctcaccatgtaattggttaatgcaattaattcatcggcttc |
287 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6848479 |
acatggcatcctcaccatgtaattggttgatgcaattaattcatcggcttc |
6848429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 6558234 - 6558093
Alignment:
| Q |
145 |
aattcccttaaacaacaaagtggcatgtcattcaattttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgaca |
244 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6558234 |
aattccctttgacaacaaggtggcatgtcattcaattttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgaca |
6558135 |
T |
|
| Q |
245 |
tcctcaccatgtaattggttaatgcaattaattcatcggctt |
286 |
Q |
| |
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|||||||||||||||| ||| |||||| |||||||||||||| |
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| T |
6558134 |
tcctcaccatgtaatttgttgatgcaagtaattcatcggctt |
6558093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 68 - 273
Target Start/End: Original strand, 6939151 - 6939365
Alignment:
| Q |
68 |
tccaaacaccatggaagctcccatccaccatgaggacagtggttttttctctagttggatgtcattgaatccaccaaaattcccttaaacaacaaagtg- |
166 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||| |||||||| | ||||||||| || | ||||||||| |
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| T |
6939151 |
tccaaacaccatggaagctcccacccaccacgaggacagaggttttttctcgagttggatgccattgaattcgacaaaattccatttgaaaacaaagtgg |
6939250 |
T |
|
| Q |
167 |
--gcatgtcattcaattttttatca------cttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgacatcctcaccatgtaa |
258 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
6939251 |
cagcatgtcattcaatttttgatcacttcttcttaacacttaaaaaaagaaataaaatgaaaactggagtaaaaggccacatgacatcctcaccgtgtaa |
6939350 |
T |
|
| Q |
259 |
ttggttaatgcaatt |
273 |
Q |
| |
|
||| || |||||||| |
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|
| T |
6939351 |
ttgattgatgcaatt |
6939365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 279
Target Start/End: Complemental strand, 6789060 - 6788912
Alignment:
| Q |
136 |
atccaccaaaattcccttaaacaacaaagtggcatgtcattcaattttttatca------cttaacaattaaaaatataaataaaatgaaaatcacggta |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||||| ||||||| | | | |
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|
| T |
6789060 |
atccaccaaaattccctttaacaacaaagtggcatgtcattcaattttttatgacttcttcttaacaattaaaaagagaaataaaacgaaaatcgcag-a |
6788962 |
T |
|
| Q |
230 |
aaaggccacatgacatcctcaccatgtaattggttaatgcaattaattca |
279 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||| || || ||| ||||||| |
|
|
| T |
6788961 |
aaaggctacatgacgtcctcactatgtaattgtttgattcaagtaattca |
6788912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 6943522 - 6943627
Alignment:
| Q |
68 |
tccaaacaccatggaagctcccatccaccatgaggacagtggttttttctctagttggatgtcattgaatccaccaaaattcccttaaacaacaaagtgg |
167 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||| |
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|
| T |
6943522 |
tccaaacatcatcgaagctcccgtccaccatgaggacagaggttttttctcgagttggatgccattgaatgcaccaaaattccctttggcaacaaagtgg |
6943621 |
T |
|
| Q |
168 |
catgtc |
173 |
Q |
| |
|
||||| |
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|
| T |
6943622 |
tatgtc |
6943627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 6940325 - 6940430
Alignment:
| Q |
68 |
tccaaacaccatggaagctcccatccaccatgaggacagtggttttttctctagttggatgtcattgaatccaccaaaattcccttaaacaacaaagtgg |
167 |
Q |
| |
|
|||||||| | | |||||||| || ||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||| |
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|
| T |
6940325 |
tccaaacatcgtcgaagctcctgtctaccatgaggacagaggttttttctcgagttggatgccattgaatgcaccaaaattccctttggcaacaaagtgg |
6940424 |
T |
|
| Q |
168 |
catgtc |
173 |
Q |
| |
|
||||| |
|
|
| T |
6940425 |
tatgtc |
6940430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 7745835 - 7745899
Alignment:
| Q |
103 |
acagtggttttttctctagttggatgtcattgaatccaccaaaattcccttaaacaacaaagtgg |
167 |
Q |
| |
|
|||||| ||||||||| |||| |||| |||||||| ||||||||||||||| |||||||||||| |
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|
| T |
7745835 |
acagtgattttttctcaagttagatgccattgaattcaccaaaattccctttgacaacaaagtgg |
7745899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 6558270 - 6558236
Alignment:
| Q |
65 |
tgttccaaacaccatggaagctcccatccaccatg |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
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|
| T |
6558270 |
tgttccaaacaccatggaagctcccattcaccatg |
6558236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 6549662 - 6549633
Alignment:
| Q |
68 |
tccaaacaccatggaagctcccatccacca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6549662 |
tccaaacaccatggaagctcccatccacca |
6549633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 6549633 - 6549581
Alignment:
| Q |
229 |
aaaaggccacatgacatcctcaccatgtaattggttaatgcaattaattcatc |
281 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| || ||| | ||||||| |
|
|
| T |
6549633 |
aaaaggtcacatgacattctcaccatgtaattggttgatacaagtcattcatc |
6549581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 17793259 - 17793295
Alignment:
| Q |
140 |
accaaaattcccttaaacaacaaagtggcatgtcatt |
176 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
17793259 |
accaaaattccctttaacaacaaagtggtatgtcatt |
17793295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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