View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6132_high_28 (Length: 247)

Name: NF6132_high_28
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6132_high_28
NF6132_high_28
[»] chr2 (21 HSPs)
chr2 (1-151)||(18779238-18779388)
chr2 (1-151)||(41643933-41644081)
chr2 (6-149)||(34441764-34441903)
chr2 (1-151)||(6177836-6177983)
chr2 (1-140)||(19073419-19073556)
chr2 (6-149)||(15650914-15651055)
chr2 (5-151)||(27138860-27139003)
chr2 (6-151)||(42005455-42005596)
chr2 (6-151)||(18059201-18059344)
chr2 (6-149)||(41713230-41713369)
chr2 (70-149)||(39788451-39788530)
chr2 (5-151)||(18947449-18947581)
chr2 (11-128)||(30844918-30845033)
chr2 (72-124)||(38250000-38250052)
chr2 (69-128)||(7553481-7553540)
chr2 (78-128)||(32651973-32652023)
chr2 (161-229)||(3646821-3646889)
chr2 (11-115)||(58097-58198)
chr2 (78-125)||(40913164-40913211)
chr2 (160-230)||(15635498-15635568)
chr2 (75-119)||(6348853-6348897)
[»] chr3 (22 HSPs)
chr3 (1-151)||(7568558-7568706)
chr3 (1-149)||(40640472-40640621)
chr3 (5-151)||(38392467-38392611)
chr3 (1-151)||(32180590-32180734)
chr3 (5-148)||(44880856-44880996)
chr3 (5-151)||(49359467-49359611)
chr3 (1-151)||(19606753-19606901)
chr3 (73-151)||(7758262-7758340)
chr3 (1-149)||(45879328-45879485)
chr3 (71-151)||(47930506-47930586)
chr3 (67-149)||(26000657-26000739)
chr3 (69-151)||(51878241-51878323)
chr3 (13-128)||(43485384-43485497)
chr3 (5-101)||(53811865-53811959)
chr3 (1-128)||(42204407-42204530)
chr3 (47-128)||(47870299-47870377)
chr3 (16-99)||(4556621-4556702)
chr3 (5-59)||(18272153-18272207)
chr3 (78-128)||(48155075-48155125)
chr3 (79-125)||(11018554-11018600)
chr3 (78-128)||(54606842-54606892)
chr3 (5-57)||(5124737-5124789)
[»] chr5 (20 HSPs)
chr5 (11-149)||(22616564-22616700)
chr5 (3-151)||(31878446-31878592)
chr5 (1-151)||(36055713-36055861)
chr5 (5-151)||(41417418-41417562)
chr5 (1-151)||(10237475-10237622)
chr5 (1-149)||(21320812-21320958)
chr5 (1-128)||(25653645-25653770)
chr5 (69-151)||(33163642-33163724)
chr5 (8-125)||(10053291-10053406)
chr5 (20-151)||(27579108-27579235)
chr5 (5-128)||(33752910-33753031)
chr5 (6-126)||(26411363-26411481)
chr5 (75-128)||(13887374-13887427)
chr5 (1-128)||(13380560-13380685)
chr5 (3-128)||(33848549-33848672)
chr5 (69-128)||(12081129-12081188)
chr5 (69-128)||(21266146-21266205)
chr5 (78-128)||(8777275-8777325)
chr5 (78-119)||(25513911-25513952)
chr5 (88-128)||(25521705-25521745)
[»] chr1 (13 HSPs)
chr1 (1-151)||(10758139-10758287)
chr1 (2-151)||(27118392-27118539)
chr1 (1-149)||(13876760-13876906)
chr1 (1-142)||(16132536-16132675)
chr1 (3-151)||(15964163-15964309)
chr1 (5-151)||(16127585-16127726)
chr1 (9-151)||(31804923-31805063)
chr1 (1-151)||(25943259-25943407)
chr1 (78-128)||(21263907-21263957)
chr1 (5-128)||(421458-421579)
chr1 (161-230)||(2344368-2344437)
chr1 (1-59)||(28012127-28012185)
chr1 (69-127)||(17695870-17695928)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-151)||(24657-24804)
[»] chr7 (13 HSPs)
chr7 (5-151)||(22955151-22955295)
chr7 (6-151)||(5781584-5781725)
chr7 (9-151)||(23402211-23402350)
chr7 (1-151)||(37854135-37854281)
chr7 (5-151)||(4618594-4618738)
chr7 (1-142)||(7742980-7743119)
chr7 (1-151)||(49002287-49002433)
chr7 (3-151)||(8133398-8133544)
chr7 (1-128)||(19786345-19786470)
chr7 (70-151)||(40382016-40382098)
chr7 (87-157)||(4902465-4902535)
chr7 (1-60)||(4902401-4902460)
chr7 (78-128)||(8758426-8758476)
[»] chr8 (10 HSPs)
chr8 (6-149)||(4108755-4108894)
chr8 (1-151)||(3038467-3038615)
chr8 (86-151)||(23176625-23176690)
chr8 (5-151)||(7290784-7290928)
chr8 (6-151)||(6267344-6267487)
chr8 (12-151)||(18756506-18756642)
chr8 (78-128)||(1879088-1879138)
chr8 (1-127)||(35735844-35735967)
chr8 (78-128)||(1835247-1835297)
chr8 (70-147)||(30380955-30381034)
[»] chr4 (20 HSPs)
chr4 (6-149)||(1012362-1012504)
chr4 (5-151)||(54995638-54995782)
chr4 (5-151)||(9743653-9743799)
chr4 (69-151)||(2708000-2708082)
chr4 (20-151)||(2570558-2570687)
chr4 (1-151)||(2266695-2266843)
chr4 (3-143)||(17612398-17612535)
chr4 (11-128)||(33036064-33036179)
chr4 (8-128)||(17513008-17513126)
chr4 (78-128)||(5915657-5915707)
chr4 (80-128)||(5812705-5812753)
chr4 (6-60)||(2704578-2704630)
chr4 (69-128)||(47236989-47237048)
chr4 (4-58)||(20097417-20097471)
chr4 (1-128)||(22756794-22756918)
chr4 (78-128)||(37793520-37793570)
chr4 (1-59)||(51204644-51204702)
chr4 (6-128)||(22729777-22729896)
chr4 (74-125)||(33255572-33255621)
chr4 (13-82)||(51959922-51959989)
[»] chr6 (10 HSPs)
chr6 (5-151)||(19631814-19631958)
chr6 (6-151)||(26301764-26301905)
chr6 (6-151)||(11083993-11084134)
chr6 (16-151)||(34993907-34994040)
chr6 (70-151)||(30341152-30341233)
chr6 (78-128)||(25441098-25441148)
chr6 (78-128)||(4488444-4488494)
chr6 (69-101)||(4103038-4103070)
chr6 (71-101)||(4102980-4103010)
chr6 (109-151)||(4104183-4104225)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-151)||(5651-5799)
[»] scaffold0262 (1 HSPs)
scaffold0262 (70-125)||(12031-12086)
[»] scaffold0312 (1 HSPs)
scaffold0312 (5-128)||(8993-9114)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 18779388 - 18779238
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  |||||||| ||| ||| |||||||||||||||||    
T  18779388 tgagcatttgtgtatttaattcatgtcacatcagattatatggtttattgcacatttgccataataaagtgtgttattttatctttacttattgcaattg 18779289  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18779288 tgttcctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 18779238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 41643933 - 41644081
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||  || |  | |||||||||||||| |||||||||||||||||    
T  41643933 tgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttg--atcataaggtgtgtcattatatctttacttattgcaattg 41644030  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    | ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  41644031 tatccctgattaaatcaaaattaaacatagtttctcatttgtgcactaaga 41644081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 34441903 - 34441764
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||||||    ||||| |||||| |||||| |||||||||||||||||||||    
T  34441903 atttgtgtatttaattcatgtcacgtcat--tatatggtgtattgcacatttgccc---ataagatgtgtcgttatatctttacttattgcaattgtgtc 34441809  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  34441808 cctgattaaatcaaaattaaacatagattctcatttgtgcactaa 34441764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 6177836 - 6177983
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaatt 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||    ||||| | ||||||||||| |||||||||| |||||    
T  6177836 tgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcatttgccc---ataaggtatgtcattatatatttacttattccaatt 6177932  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  6177933 gtgtccctgattaaatcaaa-ataaacatagattctcatttgtgcactaaga 6177983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 19073419 - 19073556
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    |||| ||||||||||||||| |||||||||||| |||||||||| |||| |||||||| | || | | |||||||||||||| ||||||||||| |||||    
T  19073419 tgagaatttgtgtatttaatccatgtcacgtcagattatatggtgtattccacatttgtc-tata-aggtgtgtcattatatatttacttattgaaattg 19073516  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcattt 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19073517 tgtccctgattaaatcaaagttaaacatagattctcattt 19073556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 15650914 - 15651055
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtc 104  Q
    ||||||||||||||| ||| |||||| | |||||||||| |||| ||||||||||    ||||| ||||||||||||| ||||||||||||||||||||     
T  15650914 atttgtgtatttaatccatatcacgtaagattatatggtgtatttcacatttgccc---ataaggtgtgtcattatatctttacttattgcaattgtgtt 15651010  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||    
T  15651011 cctgattaaatcaaaattaaacatagaatctcatttgtgcactaa 15651055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 27139003 - 27138860
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgcc-ataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    |||||||||||| ||| |||||||||||| |||||| ||| ||||||| ||||||| |||||   |||||||||||||| |||||   ||||||||||||    
T  27139003 catttgtgtatt-aatccatgtcacgtcagattatacggtgtattgcatatttgcccataaa---gtgtgtcattatatctttacgggttgcaattgtgt 27138908  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  27138907 ccctgattaaatcaaaattaaacatagattcccatttgtgcactaaga 27138860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 42005455 - 42005596
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtcc 105  Q
    |||||| |||||||| |||||||||||||  |||||||| |||||||||||  ||||||    ||||||||||| || ||||||||||| ||||||||||    
T  42005455 atttgtttatttaatccatgtcacgtcat--tatatggtgtattgcacattgcccataag---gtgtgtcattacatctttacttattgtaattgtgtcc 42005549  T
Q  106 c-tgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||    
T  42005550 cctgattaaatcaaaattaaacatagattctcatttgtgcactaaga 42005596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 18059344 - 18059201
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||| ||||  ||||||    |||||| ||||||| |||||||||||||||||||||    
T  18059344 atttgtgtatttaattcatgtcatgtcagattatatggtgtattgcatatttatccataat---gtgtgttattatatctttacttattgcaattgtgtc 18059248  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    | |||||| || ||| ||||| |||||||||| ||||||||||||||    
T  18059247 cttgattagattaaaattaaatatagattctcgtttgtgcactaaga 18059201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 41713230 - 41713369
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||| ||||||||||||||||||||||||  |||||||| | || ||||||||||    ||||| ||||||||||||| | |||||||| ||||||| ||    
T  41713230 atttatgtatttaattcatgtcacgtcat--tatatggtgtgttacacatttgccc---ataagatgtgtcattatatgtatacttattacaattgtttc 41713324  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    ||| ||||||||||| ||||||||||||||||| |||||||||||    
T  41713325 cctaattaaatcaaaattaaacatagattctcacttgtgcactaa 41713369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 39788530 - 39788451
Alignment:
Q  70 tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    |||||||||||||| ||||||| ||||||| |||| ||| |||||||||| ||||||||||||||| |||||||||||||    
T  39788530 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaacatagattctgatttgtgcactaa 39788451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 18947581 - 18947449
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgt 103  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||| |||||   |||  ||||| ||||||||||||            ||||||||||    
T  18947581 catttgtgtatttaatccatgtcacgtcagattatatggtgtattgtacatt---catccataagatgtgtcattata------------gcaattgtgt 18947497  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||    
T  18947496 ccctgattaaatcaaaagtaaacatagattctcatttgtgcattaaga 18947449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 30844918 - 30845033
Alignment:
Q  11 tgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctga 109  Q
    |||||||||| |||||||||||| |||||||| | ||||||||||||| |||||   |  |||||||||| || ||||||||||||| ||| ||| || |    
T  30844918 tgtatttaatccatgtcacgtcagattatatgatatattgcacatttgtccata---agatgtgtcattaaatctttacttattgcatttgagtctctaa 30845014  T
Q  110 ttaaatcaaagttaaacat 128  Q
    |||||||||| ||||||||    
T  30845015 ttaaatcaaaattaaacat 30845033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 38250052 - 38250000
Alignment:
Q  72 tgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaa 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  38250052 tgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaa 38250000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 7553481 - 7553540
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||| ||| |||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  7553481 gtgtatcactatatttttacttattgcaattgtgtcattgattaaatcaaaattaaacat 7553540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 32651973 - 32652023
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  32651973 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 32652023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 3646889 - 3646821
Alignment:
Q  161 catgaatcaatctggtaacctaccc-cagagggagtgttgtgaacccgaaaaacccttctgcttgttctt 229  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||||||| ||||||||||||||| |||||    
T  3646889 catgaatcaatctggtaacctacccgcggagcgagtattgtgaacccg-aaaacccttctgcttcttctt 3646821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 58097 - 58198
Alignment:
Q  11 tgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctga 109  Q
    ||||||||||||||||||  ||| |||||||||| |||||||||||||  ||||     ||||| ||  ||||||||||||||||||||||||| |||||    
T  58097 tgtatttaattcatgtcagatcaaattatatggtgtattgcacatttgttcata---cggtgtgccacaatatttttacttattgcaattgtgt-cctga 58192  T
Q  110 ttaaat 115  Q
    ||||||    
T  58193 ttaaat 58198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 40913211 - 40913164
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaa 125  Q
    |||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  40913211 tatatttttatttattgcaattgtgtccttgattaaatcaaaattaaa 40913164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 15635568 - 15635498
Alignment:
Q  160 ccatgaatcaatctggtaacctaccc-cagagggagtgttgtgaacccgaaaaacccttctgcttgttcttc 230  Q
    |||||||||||||| ||||||||||| ||||| |||| ||||||||| | ||| ||||||||||| ||||||    
T  15635568 ccatgaatcaatctagtaacctacccgcagagcgagtattgtgaacctg-aaagcccttctgcttattcttc 15635498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 6348853 - 6348897
Alignment:
Q  75 cattatatttttacttattgcaattgtgtccctgattaaatcaaa 119  Q
    ||||||| |||||||||||||||||| |||| | |||||||||||    
T  6348853 cattatagttttacttattgcaattgggtccttaattaaatcaaa 6348897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 7568706 - 7568558
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||| ||||||   |||||||||||||| |||||||||| |||||    
T  7568706 tgagcatttgtgtatttaattcatgtcacgtcagattatatgcagtattgcacatttgcacataaa---gtgtgtcattatatctttacttattacaatt 7568610  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  7568609 gtgtctctgattaaatcaaaattaaacatagattctcatttgtgcactaaga 7568558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 40640621 - 40640472
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgc---a 96  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    ||||| ||||||||||||||||||||||||||   |    
T  40640621 tgagcatttgtgtatttaatccatgtcacgtcatattatatggtgtattgcacatttgccc---ataagatgtgtcattatatttttacttattgctgca 40640525  T
Q  97 attgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    ||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||    
T  40640524 attgtgtccttgattaaatcaaaattaaagatatattctcatttgtgcactaa 40640472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 38392611 - 38392467
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||||||||||||||| ||||||| | || |||||||| | |||||||||||||||   |||  |||||||||||||| |||||||||||||||||||||    
T  38392611 catttgtgtatttaatccatgtcatgacagattatatgatgtattgcacatttgcccataat--gtgtgtcattatatatttacttattgcaattgtgtc 38392514  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  38392513 cctgattaaatcaaaattaaacatagattttcatttatgcactaaga 38392467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 32180734 - 32180590
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||  |||||||||||| | |||    |||||||||||||| |||||||||||||||||    
T  32180734 tgagcatttgtgtatttaatttatgtcacgtcagattatacggt--attgcacatttgtc-taag---gtgtgtcattatatctttacttattgcaattg 32180641  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  32180640 tgtccctgattaaatcaaaattaaacatagatttccatttgtgcactaaga 32180590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 44880856 - 44880996
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    ||||| |||||||||| |||||||||||| || ||||||| ||||||||||||||     ||||| |||||||||||| |||||||||| ||||||||||    
T  44880856 catttatgtatttaatccatgtcacgtcagataatatggtgtattgcacatttgctc---ataagggtgtcattatatctttacttattacaattgtgtc 44880952  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcacta 148  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  44880953 cctgattaaatcaaaattaaacatagattcacatttgtgcacta 44880996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 49359611 - 49359467
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    |||||||||||||||| |||| |||||||||||||||| | |||||||||||||| |||||    |||||||||||||| |||||||| |||||||||||    
T  49359611 catttgtgtatttaatccatgacacgtcatattatatgatgtattgcacatttgctcataag---gtgtgtcattatatctttacttaatgcaattgtgt 49359515  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||||| |||||||||||||   |||||||||||||||    
T  49359514 ccctgattaaatcaaaattaaacatagatttctatttgtgcactaaga 49359467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 19606901 - 19606753
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||  ||||||    |||||||||||||| ||||||| |||||||     
T  19606901 tgagcatttgtgtatttaattcaggtcacgtcagattatatggtgtattgaacatttttccataag---gtgtgtcattatatctttacttgttgcaatc 19606805  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||| ||||||||||| |||||||||||||  ||||||||||| ||||    
T  19606804 gtgtcccttattaaatcaaaattaaacatagatttccatttgtgcaccaaga 19606753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 7758340 - 7758262
Alignment:
Q  73 gtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  7758340 gtcattatatctttacttattgcaattgtgtccctaattaaatcaaaattaaacatagattctcatttgtgcactaaga 7758262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 45879485 - 45879328
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc----cataa----ataag-tgtgtcattatatttttactta 91  Q
    |||||||||||||||||||| |||| ||||||| |||||||||| |||||||||||||     |||      ||||| |||||| |||||| ||||||||    
T  45879485 tgagcatttgtgtatttaatccatgccacgtcagattatatggtgtattgcacatttgttgcacatttgcccataaggtgtgtcgttatatctttactta 45879386  T
Q  92 ttgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    ||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||    
T  45879385 ttgaaattgttttcctgattaaatcaaaattaaacatagattctcatttgtgcactaa 45879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 47930586 - 47930506
Alignment:
Q  71 gtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||   |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  47930586 gtgtcattattcctttacttattgcaattgtgtccctcattaaatcaaaattaaacatagattctcatttgtgcactaaga 47930506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 26000657 - 26000739
Alignment:
Q  67 aagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    ||||||||||||||   |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  26000657 aagtgtgtcattatcgctttacttattgcaattgtgtcattgattaaatcaaaattaaacatagattctcatttgtgcactaa 26000739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 51878241 - 51878323
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||| ||| |||||||||||||||||||| ||||||||||    
T  51878241 gtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaacatagattctcatttatgcactaaga 51878323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 43485384 - 43485497
Alignment:
Q  13 tatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgatta 112  Q
    ||||||||||||| ||| ||| ||||||||||  |||||| |||||||   || |  ||||||||||||||||||||||||| ||||| |||||||||||    
T  43485384 tatttaattcatgccacttcagattatatggtgcattgcatatttgcccctaaga--tgtgtcattatatttttacttattgtaattgagtccctgatta 43485481  T
Q  113 aatcaaagttaaacat 128  Q
    ||| ||| ||||||||    
T  43485482 aattaaaattaaacat 43485497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 53811959 - 53811865
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataa-gtgtgtcattatatttttacttattgcaattgt 101  Q
    ||||| |||||||||| |||||||||||| |||||||||| |||| ||||||||   || |||| |||||||||||||| |||||||| |||||||||    
T  53811959 catttatgtatttaatccatgtcacgtcagattatatggtgtattccacatttg---tacataaggtgtgtcattatatctttacttaatgcaattgt 53811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 42204407 - 42204530
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    ||||||||||||||||||||  ||||||| ||  |||||||||| ||||||| |||| | |||||    ||||||||| |||| ||||||||||||||||    
T  42204407 tgagcatttgtgtatttaatctatgtcacatcggattatatggtgtattgcatatttactcataag---gtgtgtcat-atatctttacttattgcaatt 42204502  T
Q  100 gtgtccctgattaaatcaaagttaaacat 128  Q
    | || ||||||||||||||| ||||||||    
T  42204503 gagt-cctgattaaatcaaaattaaacat 42204530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 47870299 - 47870377
Alignment:
Q  47 attgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||||||||||    |||||||||||||| ||||| ||||||||||| |||| ||||||||||||| | ||||||    
T  47870299 attgcacatttgccataag---gtgtgtcattatatctttacgtattgcaattgagtccttgattaaatcaaaatcaaacat 47870377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 4556621 - 4556702
Alignment:
Q  16 ttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||||||||||||||||| |||||||||  |||||||||||||| ||||   | |||||||||||||| |||||||||| |||||    
T  4556621 ttaattcatgtcacgtcagattatatggcgtattgcacatttgctcata---atgtgtgtcattatatctttacttattacaatt 4556702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 18272207 - 18272153
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc 59  Q
    |||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||    
T  18272207 catttgtgtatttaattcatatcaagtcagattatatggtgtattgcacatttgc 18272153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 48155125 - 48155075
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  48155125 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 48155075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 11018554 - 11018600
Alignment:
Q  79 atatttttacttattgcaattgtgtccctgattaaatcaaagttaaa 125  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  11018554 atatttttacttattgcaattgtatccctaattaaatcaaaattaaa 11018600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 54606842 - 54606892
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||||||||||||||||| || ||||||||| ||| ||||||||    
T  54606842 tatatttttacttattgcaattgtgcccttgattaaattaaaattaaacat 54606892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 5124737 - 5124789
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacattt 57  Q
    ||||||||||||||||  |||||| |||| |||||| ||| ||||||||||||    
T  5124737 catttgtgtatttaatgtatgtcatgtcaaattatacggtgtattgcacattt 5124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 22616564 - 22616700
Alignment:
Q  11 tgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctga 109  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||||    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  22616564 tgtatttaatccatgtcacgtcatattatatggtgtattggacatttgccc---ataaggtgtgtcattatatctttacttattgcaattgtgtccctga 22616660  T
Q  110 ttaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  22616661 ttaaatcaaaattaaacatagattctcatttgtgcactaa 22616700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 31878446 - 31878592
Alignment:
Q  3 agcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | || | | |||||||||||||| |||||||||  ||||||||    
T  31878446 agcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttgtc-tata-aggtgtgtcattatatctttacttatgacaattgtg 31878543  T
Q  103 tccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  31878544 tccctgattaaatcaaaattaaacatagattcctatttgtgcactaaga 31878592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 36055861 - 36055713
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||||||||||| |||||||||||||| | ||| |||| ||||| |||||||||||||| |||||    |||||||||||||| |||||||||| |||||    
T  36055861 tgagcatttgtgaatttaattcatgtcgcatcagattacatggtgtattgcacatttgctcataag---gtgtgtcattatatctttacttattacaatt 36055765  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  36055764 gtgtccccgattaaatcaaaattaaacatagattctcatttgtgcactaaga 36055713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 41417562 - 41417418
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    ||||||||||||||||| || ||| |||| |||||||||| ||||||| |||||| |||||    |||||||||| ||| ||||||||||||||||||||    
T  41417562 catttgtgtatttaatttatatcatgtcagattatatggtgtattgcaaatttgctcataag---gtgtgtcattttatctttacttattgcaattgtgt 41417466  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  41417465 cccagattaaatcaaaattaaacatagattctcatttgtgcactaaga 41417418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 10237475 - 10237622
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||| |||||| ||||||    || | ||||||||| |||||||||| |||||    
T  10237475 tgagcatttgtgtatttaattcatttcacgtcagattatatggtgtattgcgcatttgtccataag---gtatttcattatatatttacttattccaatt 10237571  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||| ||||||||||||  ||||||||||||||||||||| ||||||||    
T  10237572 gtgtcccagattaaatcaaa-ataaacatagattctcatttgtacactaaga 10237622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 21320812 - 21320958
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaatt 99  Q
    |||||||| |||||||||| | ||| ||| ||| |||||||||| ||||||| ||||||   | ||||| ||| ||||||||| |||||||||| |||||    
T  21320812 tgagcattcgtgtatttaactaatgccacatcagattatatggtgtattgcatatttgc---atataagatgtatcattatatctttacttattacaatt 21320908  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  21320909 gtgtctctgattaaatcaaaattaaacatagattctcatttgagcactaa 21320958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 25653645 - 25653770
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||| ||||||||||||||||||| |||||||| ||| |||||| |||||||||||||| |||||    |||||||||||||| |||||||||||||| |    
T  25653645 tgagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacatttgctcataag---gtgtgtcattatatctttacttattgcaact 25653741  T
Q  100 gtgtccctgattaaatcaaagttaaacat 128  Q
     | ||||||||||||||||| ||||||||    
T  25653742 atttccctgattaaatcaaaattaaacat 25653770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 33163642 - 33163724
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| |||||    
T  33163642 gtgtgccattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacataaattctcatgtgtgcattaaga 33163724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 10053291 - 10053406
Alignment:
Q  8 ttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtccc 106  Q
    ||||||||||||| ||||| |||||  ||||||| || |||||||||||||| |||||    |||||||||||||| ||||||||||||||||| |||||    
T  10053291 ttgtgtatttaatccatgttacgtcggattatatcgtgtattgcacatttgctcataag---gtgtgtcattatatctttacttattgcaattgagtccc 10053387  T
Q  107 tgattaaatcaaagttaaa 125  Q
    ||||||||||||| |||||    
T  10053388 tgattaaatcaaaattaaa 10053406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 27579108 - 27579235
Alignment:
Q  20 ttcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaa 119  Q
    |||||||||||||| |||||||||| ||||||| ||||||| || | ||||| |||||||||| |||| |||||||||||||||| || |||||||||||    
T  27579108 ttcatgtcacgtcagattatatggtgtattgcatatttgcc-tata-aagtgcgtcattatatctttatttattgcaattgtgtctctaattaaatcaaa 27579205  T
Q  120 gttaaacatagattctcatttgtgcactaaga 151  Q
      |||||||  |||  ||||||||||||||||    
T  27579206 agtaaacat--atttccatttgtgcactaaga 27579235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 33753031 - 33752910
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    ||||||||||||||||  ||||||| ||| |||||| ||||||||||||||||| ||| ||    |||||| ||| ||| |||||||||||| |||||||    
T  33753031 catttgtgtatttaatcaatgtcacttcagattatagggtttattgcacatttgtccacaag---gtgtgttattgtatctttacttattgccattgtgt 33752935  T
Q  104 ccctgattaaatcaaagttaaacat 128  Q
    |||||||||||| ||| ||||||||    
T  33752934 ccctgattaaataaaatttaaacat 33752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 26411363 - 26411481
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||| |||||||||| |||||||||||| |||||||||| ||||| |||||||| ||||    ||| || || ||||| |||||||||||||||||| ||    
T  26411363 atttatgtatttaatacatgtcacgtcaaattatatggtgtattgtacatttgctcata---cagtatgccactatatatttacttattgcaattgtatc 26411459  T
Q  105 cctgattaaatcaaagttaaac 126  Q
    ||| ||||||||||| ||||||    
T  26411460 cctaattaaatcaaaattaaac 26411481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 13887374 - 13887427
Alignment:
Q  75 cattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  13887374 cattatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 13887427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 13380560 - 13380685
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgcc-ataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||| |||||||||||||||   | | |||||||| || ||||| |||||||||||| || |||||  |   ||||||||||| |||| |||||||||||    
T  13380560 tgagtatttgtgtatttaatctttataacgtcatactacatggtgtattgcacatttacccataaaata---tgtcattatatctttatttattgcaatt 13380656  T
Q  100 gtgtccctgattaaatcaaagttaaacat 128  Q
    || ||||||||||||||||| ||||||||    
T  13380657 gtatccctgattaaatcaaaattaaacat 13380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 33848672 - 33848549
Alignment:
Q  3 agcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtg 102  Q
    ||||||||||||||||||  ||||||| ||| |||||| | ||||||||||||||| |   |||  |||||| ||| ||| |||| ||||||  ||||||    
T  33848672 agcatttgtgtatttaatcaatgtcacttcagattataggatttattgcacatttgtccacaat--gtgtgttattgtatctttatttattgtcattgtg 33848575  T
Q  103 tccctgattaaatcaaagttaaacat 128  Q
    || |||||||||||||| ||||||||    
T  33848574 tctctgattaaatcaaaattaaacat 33848549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 12081188 - 12081129
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||| |||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  12081188 gtgtgtccttatatctttacttattgcaattaagtccctgattaaatcaaaattaaacat 12081129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 21266146 - 21266205
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||| ||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||    
T  21266146 gtgtatcattatatctttacttattgcaattgagtctctgattaaatcaaatttaaacat 21266205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 8777325 - 8777275
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||||||||||||||||||||||||||| |  |||||||||| ||||||||    
T  8777325 tatatttttacttattgcaattgtgtccttcgttaaatcaaaattaaacat 8777275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 25513911 - 25513952
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaa 119  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  25513911 tatatttttacttattgcaattgtctccttgattaaatcaaa 25513952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 25521745 - 25521705
Alignment:
Q  88 cttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  25521745 cttattgcaattgtgtccttgattaaatcaaaattaaacat 25521705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 10758287 - 10758139
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||| ||||| |||||||||   | |  ||||||||||||||||||||||||||||||||    
T  10758287 tgagcatttgtgtatttaattcatgccacatcagattatatggtgtattgaacatttgcctatagt--gtgtgtcattatatttttacttattgcaattg 10758190  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  10758189 tgtccctaattaaatcaaaattaaacatatattctcatttgtgcactaaga 10758139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 151
Target Start/End: Original strand, 27118392 - 27118539
Alignment:
Q  2 gagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    |||||||| |||||||||| |||| |||||||||||||||| | |||||||||||||  |||||    |||||||||||||| |||||||||||||||||    
T  27118392 gagcatttatgtatttaatccatgccacgtcatattatatgatgtattgcacatttgttcataag---gtgtgtcattatatctttacttattgcaattg 27118488  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  27118489 tgtccctgattaaatcaaaattaaacatagattctcattcgtgcactaaga 27118539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 13876906 - 13876760
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgcc-ataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||| |||||||||||||||  ||| |||||||||| ||||||| |||| |||||||||| |||||   ||||||||||||||||||| |||||||||||    
T  13876906 tgagtatttgtgtatttaatcaatgccacgtcatatcatatggtgtattacacatttgcccataaa---gtgtgtcattatatttttagttattgcaatt 13876810  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    || ||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  13876809 gtatccttgattaaatcaaaattaaacatagattcccatttgtgcactaa 13876760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 16132536 - 16132675
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataa-gtgtgtcattatatttttacttattgcaatt 99  Q
    |||||||||||||||||||| ||||  |||| | |||||| ||| ||||||||||||||   | |||| |||||||||||||| ||||||||||||||||    
T  16132536 tgagcatttgtgtatttaatccatgcaacgtgagattatacggtgtattgcacatttgc---acataatgtgtgtcattatatctttacttattgcaatt 16132632  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgt 142  Q
    ||||| |||||||||||||| ||||||||||||||||||||||    
T  16132633 gtgtctctgattaaatcaaaattaaacatagattctcatttgt 16132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 15964163 - 15964309
Alignment:
Q  3 agcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgt 101  Q
    ||||||||||||||||||  ||||||||||| ||||||| || ||||||||||||| |    ||||| |||||||||||||  ||||| ||  |||||||    
T  15964163 agcatttgtgtatttaatctatgtcacgtcaaattatatagtgtattgcacatttgtcc---ataagatgtgtcattatatacttactgatatcaattgt 15964259  T
Q  102 gtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  15964260 gtccctgattaaatcaaaattaaacatagattcacatttgtgcactaaga 15964309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 16127585 - 16127726
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    |||||||||||||||| |||| ||||||| |||||||| | |||||||||||| | |||||    |||||||||||||| ||||||||||||||||||      
T  16127585 catttgtgtatttaatccatgacacgtcagattatatgatgtattgcacatttactcataag---gtgtgtcattatatgtttacttattgcaattgt-- 16127679  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16127680 ccctgaataaatcaaa-ttaaacatagattctcatttgtgcactaaga 16127726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 31805063 - 31804923
Alignment:
Q  9 tgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctg 108  Q
    ||||||||||||  ||| ||||| | |||||||||| |||||||||||||||   || |  | ||||||||||| ||||||| ||| ||||||||| |||    
T  31805063 tgtgtatttaatctatgccacgttagattatatggtgtattgcacatttgccgataaca--tatgtcattatatctttacttcttgaaattgtgtcactg 31804966  T
Q  109 attaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  31804965 attaaatcaaaattaaacatagattctcatttatgcactaaga 31804923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 25943259 - 25943407
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    |||||||| || ||||||||  | ||||||||| |||||||||| |||||||| |||||    |||  | ||| |||||||| |||| |||||| ||||     
T  25943259 tgagcattagtttatttaatcgacgtcacgtcagattatatggtgtattgcacgtttgctgataat--gcgtgccattatatctttatttattgtaattt 25943356  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||   ||||||||||||| ||||||||||||||||||||||||| |||||    
T  25943357 tgtttttgattaaatcaaaattaaacatagattctcatttgtgcaataaga 25943407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 21263957 - 21263907
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  21263957 tatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 21263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 421458 - 421579
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    ||||||||||||||||  |||||| |||| ||||||  ||||||||||||||| |  || |  | |||  |||||||| |||||| ||||||||||||||    
T  421458 catttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacatttact-tatacga-tgttccattatatctttactaattgcaattgtgtc 421555  T
Q  105 cctgattaaatcaaagttaaacat 128  Q
    | ||||||||||||| ||||||||    
T  421556 cttgattaaatcaaaattaaacat 421579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 2344437 - 2344368
Alignment:
Q  161 catgaatcaatctggtaacctaccc-cagagggagtgttgtgaacccgaaaaacccttctgcttgttcttc 230  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||||||| ||||||||||||||| ||||||    
T  2344437 catgaatcaatctggtaacctacccgcggagcgagtattgtgaacccg-aaaacccttctgcttcttcttc 2344368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28012127 - 28012185
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc 59  Q
    |||| ||||||||||||||| |||||||| | | |||||||||| ||||||||||||||    
T  28012127 tgagtatttgtgtatttaatgcatgtcacattaaattatatggtgtattgcacatttgc 28012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 17695928 - 17695870
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaaca 127  Q
    |||||||||||||  ||||||||||| ||||| |||  ||||||||||||| |||||||    
T  17695928 gtgtgtcattataactttacttattgtaattgagtctttgattaaatcaaaattaaaca 17695870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 24804 - 24657
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaatt 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||    ||||| | ||| ||||||| |||||||||| |||||    
T  24804 tgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcatttgccc---ataaggtatgttattatatatttacttattccaatt 24708  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  24707 gtgtccctgattaaatcaaa-ataaacatagattctcatttgtgcactaaga 24657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 22955295 - 22955151
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||||    || ||||||| ||| ||||||||||||||||||||    
T  22955295 catttgtgtatttaatccatgtcacgtcaaattatatggtgtattgcacatttgctcataag---gtatgtcattgtatctttacttattgcaattgtgt 22955199  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||    
T  22955198 cccttattaaatcaacattaaacatagattctcatttgtgcactaaga 22955151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 5781584 - 5781725
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    ||||||||||||||| |||||||||||||  |||||||| ||||||| ||||| |||||||    ||||||||||||| |||| ||||||||||||||||    
T  5781584 atttgtgtatttaatccatgtcacgtcat--tatatggtgtattgcatatttgaccataaaa---tgtgtcattatatctttatttattgcaattgtgtc 5781678  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||    
T  5781679 cttgattaaatcaaaattaaacatagattctcatttgtgcactaaga 5781725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 23402350 - 23402211
Alignment:
Q  9 tgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataa-ataagtgtgtcattatatttttacttattgcaattgtgtccc 106  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||    ||||||||||| |||||||||| ||||||||||||    
T  23402350 tgtgtatttaattcatgtcacgtcatattatatggtgtattgcgcatttgtccataagata----tgtcattatatatttacttatttcaattgtgtccc 23402255  T
Q  107 tgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||    
T  23402254 tgattaaatcaaa-ataaacattgattctcatttgtgcactaaga 23402211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 37854281 - 37854135
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||||    || |||  |||||| |||||| |||||||||    
T  37854281 tgagcatttgtgtatttaatccatgtcacgtcacattatatggtgtattgcacatttgctcataag---gtatgt--ttatatctttactgattgcaatt 37854187  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  37854186 gtgtccctgattaaatcaaaattaaacatagattttcatttgtacactaaga 37854135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 4618738 - 4618594
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    ||||||||||||||||||||||| | ||| |||||||||| |||||||||||||  ||||||    ||||||||||||| |||| ||||||||||||| |    
T  4618738 catttgtgtatttaattcatgtcgcttcaaattatatggtgtattgcacatttgttcataaaa---tgtgtcattatatatttatttattgcaattgtat 4618642  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
     ||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4618641 acctcattaaatcaaaattaaacatagattctcatttgtgcaccaaga 4618594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 7742980 - 7743119
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||| |||||||||||||||  ||||||||| | |||||||||| ||||| ||||||| ||||||    | |||||||||||| ||||||||||||||||    
T  7742980 tgagtatttgtgtatttaatctatgtcacgttagattatatggtgtattgtacatttgtccataag---gcgtgtcattatatctttacttattgcaatt 7743076  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgt 142  Q
    ||| |||||||||||| ||| ||||||||||||||||||||||    
T  7743077 gtgcccctgattaaattaaaattaaacatagattctcatttgt 7743119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 49002287 - 49002433
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    |||| ||||||||||||||| |||  ||  ||| |||||||||| |||||||||||| || |   |||| |||||||||||| |||||||||||||||||    
T  49002287 tgagtatttgtgtatttaatccataccatatcagattatatggtgtattgcacattttccct---taag-gtgtcattatatctttacttattgcaattg 49002382  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||  |||||||||||||| |||||||||||||| ||||||||||||||||    
T  49002383 tgtgtctgattaaatcaaaattaaacatagattcccatttgtgcactaaga 49002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 8133544 - 8133398
Alignment:
Q  3 agcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtg 102  Q
    ||||||||||||||||||||| | ||||||| |||||||||| |||||||| |||||  | |  | || |||||||||||  |||||||||||||||| |    
T  8133544 agcatttgtgtatttaattcaagacacgtcagattatatggtgtattgcacgtttgc--ttataaggtctgtcattatatcattacttattgcaattgcg 8133447  T
Q  103 tccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||| |||||    
T  8133446 tccctaattaaatcaaaattaaacgtagattcttatttgtgcagtaaga 8133398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 19786345 - 19786470
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||| |   ||   |||||||||||||| |||||||||||||||||    
T  19786345 tgagcatttgtgtatttaattcatgccacgtcatattatatgatgcattgcacatttgtctgtaag--gtgtgtcattatatctttacttattgcaattg 19786442  T
Q  101 tgtccctgattaaatcaaagttaaacat 128  Q
     |||| ||||||||||||| ||||||||    
T  19786443 agtccttgattaaatcaaaattaaacat 19786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 40382016 - 40382098
Alignment:
Q  70 tgtgtcattatatttttacttattgcaatt-gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||| |||||||||| ||||| |||||||| ||||||| ||| ||||||||||||| |||||||||||||||||    
T  40382016 tgtgtcattatatctttacttattacaatttgtgtccctaattaaataaaaattaaacatagattatcatttgtgcactaaga 40382098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 4902465 - 4902535
Alignment:
Q  87 acttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaagagagaaa 157  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||  | || |||||||||| |||||    
T  4902465 acttattgcaatagtgtccctgattaaatcaaaattaaacatagattccaaattatgcactaagatagaaa 4902535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4902401 - 4902460
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgcc 60  Q
    ||||||||| |||||||||| |||||||||||| |||||||||| ||| |||||||||||    
T  4902401 tgagcatttatgtatttaatccatgtcacgtcagattatatggtgtatagcacatttgcc 4902460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 8758426 - 8758476
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||||||||||||||||||||||||  | ||||||||| ||| ||||||||    
T  8758426 tatatttttacttattgcaattgtgctcttgattaaattaaaattaaacat 8758476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 4108894 - 4108755
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||||||||||||||| ||| ||||||||  |||||||| |||||||||||||||    ||||| |||||| |||||| |||||||||||||||||||||    
T  4108894 atttgtgtatttaattaatgccacgtcat--tatatggtgtattgcacatttgccc---ataaggtgtgtcgttatatctttacttattgcaattgtgtc 4108800  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  4108799 cctgattaaatcaaaattaaacatagattctcatttgtgcactaa 4108755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 3038467 - 3038615
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    ||||||||||| ||||||||| ||||||||||| ||||||  || |||||||||| || ||||||    |||||||||||||| ||||||||||||||||    
T  3038467 tgagcatttgtctatttaatttatgtcacgtcagattatacagtgtattgcacatctgtccataag---gtgtgtcattatatctttacttattgcaatt 3038563  T
Q  100 gtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||||||||| |||||| ||||||| ||||| ||||||||||    
T  3038564 gtgtccctgattaaatcaaaattaaacttagattcccatttatgcactaaga 3038615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 23176690 - 23176625
Alignment:
Q  86 tacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23176690 tacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaaga 23176625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 7290784 - 7290928
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgt 103  Q
    ||||||||  ||||||||||||||||||| |||||||||  ||||  |||||| ||    ||||| ||| | ||||||| |||||||||||||||||| |    
T  7290784 catttgtgcgtttaattcatgtcacgtcagattatatggcgtattagacattttccc---ataagatgtattattatatctttacttattgcaattgtat 7290880  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
     ||||||||||||||| ||| ||||||||| |||||||||||||||||    
T  7290881 tcctgattaaatcaaaattagacatagattttcatttgtgcactaaga 7290928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 6267487 - 6267344
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||||||||||||| ||||| |||||||  |||| |||| ||||  ||||||   ||  ||||| ||||| ||||||| |||||||||||||||| ||||    
T  6267487 atttgtgtatttaagtcatgccacgtcaggttatttggtgtattatacattt---atctataaggtgtgttattatatctttacttattgcaattatgtc 6267391  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    | ||||||||||||| |||||||||||||  ||||||||||||||||    
T  6267390 cttgattaaatcaaaattaaacatagatttgcatttgtgcactaaga 6267344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 18756642 - 18756506
Alignment:
Q  12 gtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtccctgat 110  Q
    ||||||||| |||| ||||||| |||||||||| ||||||||||||| |    ||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  18756642 gtatttaatccatg-cacgtcaaattatatggtctattgcacatttgtct---ataagatgtgtcattatatctttacttattgcaattgtgtccatgat 18756547  T
Q  111 taaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    | ||| |||  ||| |||| |||| | ||||||||||||||    
T  18756546 tcaattaaaagtaagcatatattcccctttgtgcactaaga 18756506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 1879138 - 1879088
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  1879138 tatatttttacttattgcaaatgtgtccttgattaaatcaaaattaaacat 1879088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 35735967 - 35735844
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    ||||||||||||||||||||   |||| ||| | |||||||||| |||||||||||||| ||||   | ||||| || ||||| ||||| |||| |||||    
T  35735967 tgagcatttgtgtatttaatgtgtgtcccgttaaattatatggtgtattgcacatttgctcata---aggtgtgccactatatctttacctattacaatt 35735871  T
Q  100 gtgtccctgattaaatcaaagttaaaca 127  Q
    |||| ||||||||||| ||| |||||||    
T  35735870 gtgt-cctgattaaataaaaattaaaca 35735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 1835297 - 1835247
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||||||| |||| ||||||| ||||||||||||| ||||||||    
T  1835297 tatatttttacttatcgcaaatgtgtccttgattaaatcaaaattaaacat 1835247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 30381034 - 30380955
Alignment:
Q  70 tgtgtcattatatttttacttattgcaattgtgtccctgattaa--atcaaagttaaacatagattctcatttgtgcact 147  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||  || ||| |||| |||||||||| |||| ||||||    
T  30381034 tgtgtcattatatctttacttattataattgtgcccctgattaaatataaaaattaagcatagattcttatttatgcact 30380955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 1012362 - 1012504
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaatt-gtgt 103  Q
    ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||    ||||| ||||||||||||| |||||||||||||||| ||||    
T  1012362 atttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacatttgccc---ataaggtgtgtcattatatctttacttattgcaatttgtgt 1012458  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaa 149  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  1012459 ccctgattaaatcaaaattaaacatagattcctatttgtgcactaa 1012504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 54995782 - 54995638
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    |||||| ||||||||| ||||||| ||||  ||||||| | ||||||||||||| ||||||    ||||||| |||||| ||||||||||||||||||||    
T  54995782 catttgcgtatttaatccatgtcatgtcaggttatatgatgtattgcacatttgtccataat---gtgtgtctttatatctttacttattgcaattgtgt 54995686  T
Q  104 ccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||||| ||||| ||||||||| ||||||| |||||||    
T  54995685 ccctgattaaatcaaaattaaatatagattcttatttgtgtactaaga 54995638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 9743653 - 9743799
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcaca-tttgccataaataagtgtgtcattatatttttacttattgcaattgtgt 103  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||| |||||   |||||| |||||| || |||||||||||||||| |||    
T  9743653 catttgtgtatttaatccatgtaacgtcatattatatggtgtattgcacatttttccata---aagtgtttcattaaatctttacttattgcaattatgt 9743749  T
Q  104 ccctgattaaatcaaagttaaac--atagattctcatttgtgcactaaga 151  Q
     | ||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  9743750 tcttgattaaatcaaaattaaacatatatattctcatttgtgcactaaga 9743799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 2708000 - 2708082
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2708000 gtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaacatggattctcatttgtgcactaaga 2708082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 2570558 - 2570687
Alignment:
Q  20 ttcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaa 119  Q
    |||||||||||||| |||||||||| ||||| | ||||| | || | |||||||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  2570558 ttcatgtcacgtcagattatatggtgtattgtatatttggc-tata-aagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaa 2570655  T
Q  120 gttaaacatagattctcatttgtgcactaaga 151  Q
      ||||||||||||  ||||||||||||||||    
T  2570656 agtaaacatagatttccatttgtgcactaaga 2570687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2266843 - 2266695
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    |||||||||||||||||||| |||| ||||| | |||| ||||| |||| |||||||| | || | | |||||||||||||| |||||||||||||| |     
T  2266843 tgagcatttgtgtatttaatccatgccacgttagattacatggtgtattacacatttgtc-tata-aggtgtgtcattatatctttacttattgcaacta 2266746  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    || |  ||||||||||||| |||||||||||||| ||||||||||||||||    
T  2266745 tgactttgattaaatcaaaattaaacatagattcccatttgtgcactaaga 2266695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 17612398 - 17612535
Alignment:
Q  3 agcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgt 101  Q
    |||||||||||||| ||||||||||||| || |||| ||| | |||| |||||||||||   ||||| |||||||||  || |||||||||||||||| |    
T  17612398 agcatttgtgtatt-aattcatgtcacgccagattaaatgatgtatttcacatttgcca---ataaggtgtgtcattgcatctttacttattgcaattat 17612493  T
Q  102 gtccctgattaaatcaaagttaaacatagattctcatttgtg 143  Q
    ||||  |||||||||||| |||||||||||||  ||||||||    
T  17612494 gtcctagattaaatcaaaattaaacatagattgccatttgtg 17612535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 33036179 - 33036064
Alignment:
Q  11 tgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgat 110  Q
    |||||||||| ||||| |||| | ||||||| || ||||||||||||||| || | | || ||||||||||| ||||||||||||||||| ||| |||||    
T  33036179 tgtatttaatccatgttacgttagattatattgtgtattgcacatttgcc-tata-aggtttgtcattatatctttacttattgcaattgagtctctgat 33036082  T
Q  111 taaatcaaagttaaacat 128  Q
    ||||||||| ||||||||    
T  33036081 taaatcaaaattaaacat 33036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 17513126 - 17513008
Alignment:
Q  8 ttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtccct 107  Q
    |||||||||||||||||||| ||||| ||||||| || | |||||||| ||| ||| | | |||||||||||||| |||| |||||| ||||| |||  |    
T  17513126 ttgtgtatttaattcatgtcgcgtcagattatatagtgtgttgcacatctgc-atata-atgtgtgtcattatatctttatttattgtaattgagtctat 17513029  T
Q  108 gattaaatcaaagttaaacat 128  Q
     ||||||||||| ||||||||    
T  17513028 aattaaatcaaaattaaacat 17513008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 5915707 - 5915657
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  5915707 tatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 5915657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 5812705 - 5812753
Alignment:
Q  80 tatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  5812705 tatttttacttattgcaattgtgtcattgattaaatcaaaattaaacat 5812753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 2704578 - 2704630
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgcc 60  Q
    |||||||||||||||||| ||||||||  |||||||||| |||||||||||||||    
T  2704578 atttgtgtatttaattcacgtcacgtc--attatatggtgtattgcacatttgcc 2704630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 47236989 - 47237048
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||| |||||||||||||||||||| |  |||||||||||| || ||||||||    
T  47236989 gtgtgtcattagatttttacttattgcaattgcgcacctgattaaatcgaaattaaacat 47237048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 20097471 - 20097417
Alignment:
Q  4 gcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttg 58  Q
    |||||||||||||||||||||| ||||||| ||||||| || ||||||| |||||    
T  20097471 gcatttgtgtatttaattcatgccacgtcagattatatagtgtattgcatatttg 20097417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22756918 - 22756794
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaatt 99  Q
    |||| ||||||||||||||| |||| ||| ||| |||||| ||| |||||||||||||| ||||    || ||| || ||||| |||||||||| |||||    
T  22756918 tgagtatttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcata---cagcgtgccactatatctttacttattccaatt 22756822  T
Q  100 gtgtccctgattaaatcaaagttaaacat 128  Q
    | || ||||||| ||||||| ||||||||    
T  22756821 gcgt-cctgattgaatcaaaattaaacat 22756794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 37793520 - 37793570
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||||||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  37793520 tatatttttacttattgcaattgtgtctttgattaaattaaaattaaacat 37793570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51204644 - 51204702
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc 59  Q
    ||||| |||||||||||||| |||||||| ||| ||||||||||  |||||||||||||    
T  51204644 tgagcttttgtgtatttaatccatgtcacatcagattatatggtgcattgcacatttgc 51204702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 22729777 - 22729896
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgc-cataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    ||||||||||||||| |||| ||| ||| |||||| ||| |||||||||||||| ||||     ||||| || ||||| || ||||||||||| |||||     
T  22729777 atttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcata---tggtgtgccactatatcttaacttattgcaactgtgt- 22729872  T
Q  105 cctgattaaatcaaagttaaacat 128  Q
    ||||||| ||||||| ||||||||    
T  22729873 cctgattgaatcaaaattaaacat 22729896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 33255572 - 33255621
Alignment:
Q  74 tcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaa 125  Q
    |||| |||| ||||||||||||||||||||  || |||||||||||||||||    
T  33255572 tcatcatatctttacttattgcaattgtgt--cttattaaatcaaagttaaa 33255621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 51959922 - 51959989
Alignment:
Q  13 tatttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatat 82  Q
    ||||||||  || |||||||| |||||||||| ||||||||||||| |||||   ||||||||||||||||    
T  51959922 tatttaatctatatcacgtcagattatatggtgtattgcacatttgcccata---aagtgtgtcattatat 51959989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 19631814 - 19631958
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||||||||||||||| |||||||||| | |||||||||| ||||||||||||||| || | | |||| ||||||||| ||||||||||||||| |||||    
T  19631814 catttgtgtatttaatccatgtcacgttagattatatggtgtattgcacatttgcc-tata-aggtgtttcattatatctttacttattgcaatcgtgtc 19631911  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
     |||||||||||||| ||||| ||| |||||||||||||||||||||    
T  19631912 tctgattaaatcaaaattaaaaataaattctcatttgtgcactaaga 19631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 26301905 - 26301764
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||| ||||||||||||||||||||||||  |||||| | ||||||| ||||   ||  ||||| ||||||||||||| |||||||||||||||||||||    
T  26301905 atttatgtatttaattcatgtcacgtcat--tatatgatgtattgcatattt---atccataagatgtgtcattatatctttacttattgcaattgtgtc 26301811  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  26301810 cctgattaaatcaaaattaaacatagattctcatttgtgtactaaga 26301764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 11084134 - 11083993
Alignment:
Q  6 atttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataag-tgtgtcattatatttttacttattgcaattgtgtc 104  Q
    |||| |||||||||| |||||||||||||  |||||||| |||| ||||||||||    ||||| ||||||||||||| |||||||||||||||||||||    
T  11084134 atttatgtatttaatccatgtcacgtcat--tatatggtgtattacacatttgccc---ataaggtgtgtcattatatctttacttattgcaattgtgtc 11084040  T
Q  105 cctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
     |||||||||||||| |||||||||||||||||||||| || |||||    
T  11084039 tctgattaaatcaaaattaaacatagattctcatttgttcattaaga 11083993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 34993907 - 34994040
Alignment:
Q  16 ttaattcatgtcacgtcatattatatggtttattgcacatttg-ccataaataagtgtgtcattatatttttacttattgcaattgtgtccctgattaaa 114  Q
    |||||||||||||| ||| |||||||||| ||||||||||||| ||||||    || ||| ||||||| |||||||||| ||||||||||| ||||||||    
T  34993907 ttaattcatgtcacatcagattatatggtgtattgcacatttgtccataat---gtatgttattatatctttacttattacaattgtgtccttgattaaa 34994003  T
Q  115 tcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  34994004 tcaaaattaaacatagattctcatttatgcactaaga 34994040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 30341152 - 30341233
Alignment:
Q  70 tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||||| || ||||||||||||||||| | ||||||||||||| ||||| |||||||| |||| |||||||||||    
T  30341152 tgtgtcattatatcttcacttattgcaattgtgttcatgattaaatcaaaattaaatatagattcccattagtgcactaaga 30341233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 25441098 - 25441148
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  25441098 tatatttttacttattgcaattgtgtccttgattaaattaaaattaaacat 25441148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 4488494 - 4488444
Alignment:
Q  78 tatatttttacttattgcaattgtgtccctgattaaatcaaagttaaacat 128  Q
    ||||||||||||| |||||||||||| | ||||||||||||| ||||||||    
T  4488494 tatatttttacttgttgcaattgtgttcttgattaaatcaaaattaaacat 4488444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 4103038 - 4103070
Alignment:
Q  69 gtgtgtcattatatttttacttattgcaattgt 101  Q
    |||||||||||||||||||||||||||||||||    
T  4103038 gtgtgtcattatatttttacttattgcaattgt 4103070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 4102980 - 4103010
Alignment:
Q  71 gtgtcattatatttttacttattgcaattgt 101  Q
    |||||||||||||||||||||||||||||||    
T  4102980 gtgtcattatatttttacttattgcaattgt 4103010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 4104183 - 4104225
Alignment:
Q  109 attaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||    
T  4104183 attaaatcaaaattaaacataaattcccatttgtgcactaaga 4104225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 5651 - 5799
Alignment:
Q  1 tgagcatttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattg 100  Q
    |||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||| || | | |||||||||||||| ||| ||||||||||||     
T  5651 tgagcatttgtgtatttaattcatgtcatgttagattatatggtgtattgcacatttgcc-tata-aggtgtgtcattatatatttccttattgcaatta 5748  T
Q  101 tgtccctgattaaatcaaagttaaacatagattctcatttgtgcactaaga 151  Q
    ||||||| ||||||||||| |||||||| ||||| ||||||| || |||||    
T  5749 tgtccctcattaaatcaaaattaaacatggattcgcatttgttcattaaga 5799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 12086 - 12031
Alignment:
Q  70 tgtgtcattatatttttacttattgcaattgtgtccctgattaaatcaaagttaaa 125  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  12086 tgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaattaaa 12031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 9114 - 8993
Alignment:
Q  5 catttgtgtatttaattcatgtcacgtcatattatatggtttattgcacatttgccataaataagtgtgtcattatatttttacttattgcaattgtgtc 104  Q
    ||||||||||||||||  |||||| |||| ||||||  ||||||||||||||| |  || |  | |||  |||||||| |||||| ||||||||||||||    
T  9114 catttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacatttact-tatacga-tgttccattatatctttactaattgcaattgtgtc 9017  T
Q  105 cctgattaaatcaaagttaaacat 128  Q
    | ||||||||||||| ||||||||    
T  9016 cttgattaaatcaaaattaaacat 8993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University