View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_high_30 (Length: 245)
Name: NF6132_high_30
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8420094 - 8419869
Alignment:
| Q |
1 |
attcaacccagatttgaatcacttatcttcaactctaaatctcttaaacccatcttgaaaagaagaagattatgaatctggattgaagagagtaaagaat |
100 |
Q |
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| T |
8420094 |
attcaacccagatttgaatcacttatcttcaactctaaatctcttaaacccatcttgaaaagaagaagattatgaatctggattgaagagagtaaagaat |
8419995 |
T |
|
| Q |
101 |
gtatgtgagggaagaataagaataagagggcataatggtcatttcatttttagttgaagtatcagggggatttttgtcagttcaagacatcttttgctga |
200 |
Q |
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| T |
8419994 |
gtatgtgagggaagaataagaataagagggcataatggtcatttcatttttagttgaagtcccagggggatttttgtcagttcaagacatcttttgctaa |
8419895 |
T |
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| Q |
201 |
ctcatcatctcatttaaccaatcagc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8419894 |
ctcatcatctcatttaaccaatcagc |
8419869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 952479 - 952398
Alignment:
| Q |
63 |
aagaagattatgaatctggattgaagagagtaaagaatgtatgtgagggaagaataagaataagagggcataatggtcattt |
144 |
Q |
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| T |
952479 |
aagaagattatgaatctggagtgaagagggtgcaaaaggtatgtgagggaagaagaagaataagagggcataatggtcattt |
952398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 29566452 - 29566506
Alignment:
| Q |
164 |
agggggatttttgtcagttcaagacatcttttgctgactcatcatctcatttaac |
218 |
Q |
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| T |
29566452 |
aggggtatttttgtcagttcacaccatcttttgttgattcatcatctcatttaac |
29566506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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