View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6132_high_31 (Length: 239)

Name: NF6132_high_31

Description: NF6132

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6132_high_31

[»] chr4 (2 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 198 - 234

Target Start/End: Original strand, 48797378 - 48797414

Alignment:

Q	198	aattgaaagcaccatgttctaacatttgtaagttgta	234	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48797378	aattgaatgcaccatgttctaacatttgtaagttgta	48797414	T

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Target: chr4; HSP #2

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 207 - 239

Target Start/End: Original strand, 48814093 - 48814125

Alignment:

Q	207	caccatgttctaacatttgtaagttgtatttac	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48814093	caccatgttctaacatctgtaagttgtatttac	48814125	T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 78 - 107

Target Start/End: Complemental strand, 31676689 - 31676660

Alignment:

Q	78	taacaaactaaatgtgtagccaatgtttgt	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31676689	taacaaactaaatgtgtagccaatgtttgt	31676660	T

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