View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_high_39 (Length: 226)
Name: NF6132_high_39
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 27445900 - 27446095
Alignment:
| Q |
14 |
cacagaatccatcaaggaattgtttccacaaaaacttgtagatctatctatatatactcattatgactatctcaagcagcaacacaattcaagttactca |
113 |
Q |
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| T |
27445900 |
cacagaatccatcaaggaattgtttccacaaaaacttgtagatctatctatatatactcattatgactatctcaagcagcaacacaattcaagttactca |
27445999 |
T |
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| Q |
114 |
caaatacaaattcaaatatttctttcttacatacacaagctgttagtgtgttgtaactcataataacaatgggctttcgcttacctggtatcatta |
209 |
Q |
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| T |
27446000 |
caaatacaaattaaaatatttctttcttacatacacaagatgttagtgtgttgtaactcataataacaatgggctttcgtttacctggtatcatta |
27446095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 27556735 - 27556638
Alignment:
| Q |
61 |
ctatatatactcattatgactatctcaagcagcaacacaattcaagttactcac-aaatacaaattcaaatatttctttcttacatacacaagctgtt |
157 |
Q |
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| T |
27556735 |
ctatatatactcattatgacattcttaagcagcaatacaattcaagtcactcacaaaatacaaattcaaatatttctttctttcatacaaaagctgtt |
27556638 |
T |
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