View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6132_high_42 (Length: 206)
Name: NF6132_high_42
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37264964 - 37264898
Alignment:
| Q |
1 |
cataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccat |
67 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37264964 |
cataggcgagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccat |
37264898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37261191 - 37261132
Alignment:
| Q |
1 |
cataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaat |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37261191 |
cataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaat |
37261132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37276914 - 37276848
Alignment:
| Q |
1 |
cataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccat |
67 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
37276914 |
cataggcaaggccaatcatggctaacattacaagggctagaataacaacatgccttgaatgtgccat |
37276848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37280763 - 37280697
Alignment:
| Q |
1 |
cataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccat |
67 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||| |
|
|
| T |
37280763 |
cataggtaaggccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccat |
37280697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University