View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6132_high_43 (Length: 205)

Name: NF6132_high_43
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6132_high_43
NF6132_high_43
[»] chr2 (13 HSPs)
chr2 (18-186)||(15129146-15129315)
chr2 (30-157)||(31636093-31636220)
chr2 (22-165)||(33655376-33655519)
chr2 (33-157)||(27956368-27956492)
chr2 (18-165)||(22011182-22011329)
chr2 (18-135)||(31633884-31634001)
chr2 (33-157)||(27952532-27952656)
chr2 (26-169)||(22264182-22264324)
chr2 (18-117)||(2155765-2155864)
chr2 (22-165)||(35682004-35682146)
chr2 (18-117)||(2165721-2165820)
chr2 (49-103)||(8781323-8781377)
chr2 (119-165)||(1517980-1518027)
[»] chr7 (13 HSPs)
chr7 (18-165)||(1220625-1220772)
chr7 (18-165)||(859348-859495)
chr7 (18-165)||(1217352-1217499)
chr7 (18-165)||(13882877-13883022)
chr7 (18-165)||(13886379-13886526)
chr7 (18-157)||(4300314-4300453)
chr7 (18-157)||(4303215-4303346)
chr7 (121-165)||(30217608-30217652)
chr7 (119-165)||(4888946-4888992)
chr7 (128-165)||(29175573-29175610)
chr7 (121-157)||(1883298-1883334)
chr7 (121-157)||(1874347-1874382)
chr7 (121-165)||(13466547-13466590)
[»] chr3 (9 HSPs)
chr3 (18-165)||(43306864-43307011)
chr3 (18-165)||(43304150-43304297)
chr3 (21-165)||(53012778-53012920)
chr3 (18-157)||(3069067-3069206)
chr3 (18-165)||(3063929-3064078)
chr3 (18-117)||(45168485-45168584)
chr3 (121-165)||(365846-365890)
chr3 (77-116)||(19795067-19795106)
chr3 (121-154)||(2472952-2472985)
[»] chr1 (8 HSPs)
chr1 (18-165)||(50857637-50857783)
chr1 (64-165)||(13444223-13444324)
chr1 (23-117)||(8931022-8931116)
chr1 (18-165)||(13441791-13441928)
chr1 (121-165)||(31915338-31915382)
chr1 (39-103)||(42071534-42071598)
chr1 (121-154)||(43681259-43681292)
chr1 (121-156)||(31913198-31913233)
[»] chr8 (12 HSPs)
chr8 (33-167)||(42891878-42892012)
chr8 (18-165)||(22512240-22512387)
chr8 (18-147)||(23570355-23570484)
chr8 (18-147)||(23573351-23573480)
chr8 (18-140)||(6845112-6845234)
chr8 (31-123)||(18468508-18468600)
chr8 (18-117)||(22922043-22922142)
chr8 (22-153)||(37189629-37189759)
chr8 (64-153)||(18180926-18181014)
chr8 (119-165)||(24730821-24730867)
chr8 (79-140)||(42890182-42890243)
chr8 (18-53)||(22926839-22926874)
[»] chr4 (7 HSPs)
chr4 (18-162)||(22691060-22691208)
chr4 (18-147)||(6659522-6659651)
chr4 (39-153)||(22988679-22988793)
chr4 (39-153)||(22716424-22716538)
chr4 (18-169)||(24667427-24667584)
chr4 (22-152)||(13085288-13085417)
chr4 (62-152)||(19935271-19935360)
[»] chr5 (5 HSPs)
chr5 (18-165)||(21849163-21849310)
chr5 (18-147)||(40778979-40779108)
chr5 (63-165)||(21845127-21845229)
chr5 (63-165)||(21857122-21857224)
chr5 (63-166)||(19501187-19501289)
[»] chr6 (10 HSPs)
chr6 (77-157)||(29341043-29341123)
chr6 (18-117)||(3535833-3535932)
chr6 (18-117)||(3542044-3542143)
chr6 (17-147)||(30049685-30049813)
chr6 (63-153)||(11194428-11194517)
chr6 (18-147)||(30051972-30052099)
chr6 (63-165)||(18726883-18726983)
chr6 (80-145)||(18203253-18203318)
chr6 (22-156)||(11190259-11190392)
chr6 (121-157)||(8050125-8050161)
[»] scaffold0110 (1 HSPs)
scaffold0110 (18-117)||(46897-46996)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 15129315 - 15129146
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| |||||  |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15129315 ataagttctgcttatatagtgaaagaaataacaaacccgtgggccgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 15129216  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatcatattgtat-ctaagttttttac 186  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  15129215 gttaaataataaatactactaaattattaataaaaccctcctgcatcatattgtatcctaagttttttac 15129146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 31636220 - 31636093
Alignment:
Q  30 tatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataa 129  Q
    |||||||||||||||||| ||||| ||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  31636220 tatatagtgaaagaaataacaaacatgtgggccaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataa 31636121  T
Q  130 atactactaaattactaataaaaccctc 157  Q
    ||||||||||||||||||||||||||||    
T  31636120 atactactaaattactaataaaaccctc 31636093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 33655519 - 33655376
Alignment:
Q  22 gttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggtta 121  Q
    ||||| |||||||||||||||||||| |||||  |||||  ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||    
T  33655519 gttctccttatatagtgaaagaaataacaaacccgtgggccgaaataaaataaaacaaaataataatagaaagttctagaaaattactaagatttggcta 33655420  T
Q  122 aataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||    
T  33655419 aataatagatactactaaattaccaataaaaccctcctgcatca 33655376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 27956368 - 27956492
Alignment:
Q  33 atagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaata 132  Q
    ||||||| ||||||| |||||  ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  27956368 atagtgatagaaataacaaacccgtgggctaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggataaataataaata 27956467  T
Q  133 ctactaaattactaataaaaccctc 157  Q
    |||||||||||||||||||||||||    
T  27956468 ctactaaattactaataaaaccctc 27956492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 22011329 - 22011182
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||| |||||||||||||||||||||| || ||  |||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22011329 ataagttttgcttatatagtgaaagaaataacagacccgtgggccaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttg 22011230  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    | ||||||||||||||||||||||||   ||||||||||| |||||||    
T  22011229 gctaaataataaatactactaaattaaagataaaaccctcctgcatca 22011182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 31634001 - 31633884
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||||| |||||||||||||||||||| |||||| |||||  |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  31634001 ataagttctacttatatagtgaaagaaataacaaactcgtgggccgaaataaaataaaatgaaataataatagaaagttctagaaaattactaagatttg 31633902  T
Q  118 gttaaataataaatacta 135  Q
    | ||||||||||||||||    
T  31633901 gctaaataataaatacta 31633884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 27952532 - 27952656
Alignment:
Q  33 atagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaata 132  Q
    ||||||| ||||||| |||||  |||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  27952532 atagtgatagaaataacaaacccgtgggccaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggataaataataaata 27952631  T
Q  133 ctactaaattactaataaaaccctc 157  Q
    ||||||||||| |||||||||||||    
T  27952632 ctactaaattattaataaaaccctc 27952656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 22264324 - 22264182
Alignment:
Q  26 tgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaata 125  Q
    |||||| |||| |||||||||| |||||  ||| |  ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||| |    
T  22264324 tgcttaaatagcgaaagaaataacaaacccgtgagccgaaataaaacaaaacaaaataataatagaaagttctagaaaattactaagatttggctaaa-a 22264226  T
Q  126 ataaatactactaaattactaataaaaccctcttgcatcatatt 169  Q
      |||||||||||||||||||| |||| |||  |||||||||||    
T  22264225 taaaatactactaaattactaagaaaatccttctgcatcatatt 22264182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 2155864 - 2155765
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| |||||  |||||   |||||||| ||||| |||||||||||| |||||||||||||| |||||||||||    
T  2155864 ataagttctgcttatatagtgaaagaaataacaaacacgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaagatttg 2155765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 35682146 - 35682004
Alignment:
Q  22 gttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggtta 121  Q
    |||||| ||| ||||  ||| ||||| ||||| ||||||   |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||    
T  35682146 gttctgtttaaatagcaaaataaataacaaacctgtgggtccaaataaaacaaaacgaaataacaatagaaagttctagaaaattactaagatttggcta 35682047  T
Q  122 aataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    || |  ||||||||  |||||||||| ||||||||| |||||||    
T  35682046 aa-ataaaatactataaaattactaagaaaaccctcctgcatca 35682004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 2165820 - 2165721
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||||| |||||||||||||||||||| |||||| |||||   |||||||| ||||| |||||||||||  |||||||| ||||| |||||||||||    
T  2165820 ataagttctccttatatagtgaaagaaataacaaactcgtgggccaaaataaaacaaaacaaaataataatacaaagttctaaaaaatcactaagatttg 2165721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 8781377 - 8781323
Alignment:
Q  49 caaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaa 103  Q
    ||||| ||||||  ||||||||| |||||||||||||||||| ||||||||||||    
T  8781377 caaacatgtgggccgaaataaaacaaaacgaaataataatagaaagttctagaaa 8781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 1518027 - 1517980
Alignment:
Q  119 ttaaataataaa-tactactaaattactaataaaaccctcttgcatca 165  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||||||    
T  1518027 ttaaataataaaatactactaaattactaagaaaaccctcctgcatca 1517980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 8e-57; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 1220625 - 1220772
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||| ||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1220625 ataagttctgtttatatagtgaaagaaataacaaactcgtgggccgaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttg 1220724  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    | ||||||||||||||||||||||||||||||||| |||| |||||||    
T  1220725 gctaaataataaatactactaaattactaataaaatcctcctgcatca 1220772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 859348 - 859495
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||| || ||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  859348 ataagttatgtttatatagtgaaagaaataacaaactcgtgggccgaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttg 859447  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    | ||||||||||||||||||||||||||||||||| |||| |||||||    
T  859448 gctaaataataaatactactaaattactaataaaatcctcctgcatca 859495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 1217352 - 1217499
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||| || ||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1217352 ataagttatgtttatatagtgaaagaaataacaaactcgtgggccgaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttg 1217451  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    | |||||||||||||||||| ||||||||||||||||||| |||||||    
T  1217452 gctaaataataaatactactgaattactaataaaaccctcctgcatca 1217499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 13882877 - 13883022
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| |||||  |||||   ||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  13882877 ataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatag--agttctagaaaattactaagatttg 13882974  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
      |||||||||||||||||||||||||||||||||||||| |||||||    
T  13882975 actaaataataaatactactaaattactaataaaaccctcctgcatca 13883022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 13886379 - 13886526
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||| ||||||||||||||||||||| |||||  |||||   ||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  13886379 ataagttcagcttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttg 13886478  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
      |||||||||||||||||||||||||||||||||||||  |||||||    
T  13886479 actaaataataaatactactaaattactaataaaacccttctgcatca 13886526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 4300453 - 4300314
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||||| ||||||||  |||||||||| |||||  |||||   ||||||||||||||| |||||||||||  |||| ||||||||||||| | ||||    
T  4300453 ataagttctccttatataccgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttttagaaaattactatgttttg 4300354  T
Q  118 gttaaataataaatactactaaattactaataaaaccctc 157  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  4300353 gctaaataataaatactactaaattactaataaaaccctc 4300314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 4303346 - 4303215
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||| ||| ||||||||||||||||||| |||||  |||||   ||||||||||||||  |||||||| ||  ||||||||||||||| |       |    
T  4303346 ataagtcctgtttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacataataataa-agagagttctagaaaattaat-------g 4303255  T
Q  118 gttaaataataaatactactaaattactaataaaaccctc 157  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  4303254 gctaaataataaatactactaaattactaataaaaccctc 4303215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 30217652 - 30217608
Alignment:
Q  121 aaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    ||||||||||||||||||||||| | |||||||||||||||||||    
T  30217652 aaataataaatactactaaattagttataaaaccctcttgcatca 30217608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 4888946 - 4888992
Alignment:
Q  119 ttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||    
T  4888946 ttaaataataaatactactaaattactaataaaattctcctgcatca 4888992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 29175610 - 29175573
Alignment:
Q  128 aaatactactaaattactaataaaaccctcttgcatca 165  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29175610 aaatactactaaattactaataaaaccctcctgcatca 29175573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 1883334 - 1883298
Alignment:
Q  121 aaataataaatactactaaattactaataaaaccctc 157  Q
    ||||||||||||||||||| |||||||||||||||||    
T  1883334 aaataataaatactactaagttactaataaaaccctc 1883298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 1874382 - 1874347
Alignment:
Q  121 aaataataaatactactaaattactaataaaaccctc 157  Q
    ||||||||||||||||||||||||||| |||||||||    
T  1874382 aaataataaatactactaaattactaa-aaaaccctc 1874347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 13466590 - 13466547
Alignment:
Q  121 aaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||    
T  13466590 aaataataaatacaactaaattact-ataaaaccctcctgcatca 13466547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 43306864 - 43307011
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| ||||   |||||   ||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  43306864 ataagttctgcttatatagtgaaagaaataacaaaaccgtgggccaaaataaaataaaacgaaataataatagaatgttctagaaaattactaagatttg 43306963  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  43306964 gttaaataataaatactactaaattactaataaaaccctcctgcatca 43307011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 43304150 - 43304297
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| |||||  |||||   |||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  43304150 ataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacgaaatactaatagaaagttatagaaaattactaagatttg 43304249  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  43304250 gctaaataataaatgctactaaattactaataaaaccctcctgcatca 43304297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 53012920 - 53012778
Alignment:
Q  21 agttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggtt 120  Q
    |||| |||||||||||||||||||||| |||||  ||||| | ||||||||||||||  |||||||||||  |||||||||||||||||||||||||| |    
T  53012920 agttatgcttatatagtgaaagaaataacaaacccgtgggctaaaataaaataaaacataataataatag--agttctagaaaattactaagatttggct 53012823  T
Q  121 aaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  53012822 aaataataaatactactaaattactaataaaaccctcctgcatca 53012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 3069067 - 3069206
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||| |||||||||||||||||||||| |||||| ||| |   ||||||||||||||| |||||||||||  ||||||||| |||||| ||||||||    
T  3069067 ataagttatgcttatatagtgaaagaaataacaaactcgtgtgccaaaataaaataaaacgtaataataatagtgagttctagagaattacaaagatttg 3069166  T
Q  118 gttaaataataaatactactaaattactaataaaaccctc 157  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  3069167 gctaaataataaatactactaaattactaataaaaccctc 3069206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 3063929 - 3064078
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaata--ataataggaagttctagaaaattactaagatt 115  Q
    ||||||| |||||||||||||||||||||| |||||  |||||   ||||||||||||||| ||||  ||||||   ||||||||| |||||||||||||    
T  3063929 ataagttatgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaatataataataacgagttctagagaattactaagatt 3064028  T
Q  116 tggttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    ||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  3064029 tggctaaataataaatactactaaattactaacaaaaccctcctgcatca 3064078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 45168485 - 45168584
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||| ||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||    
T  45168485 ataacttctgcttatatagtgaaagaaataacaaactcgtggactgaaataaaataaaacgaaataataatagaaggttttagaaaattactaaaatttg 45168584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 365846 - 365890
Alignment:
Q  121 aaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    |||||||||||||||||||||||||||||||| |||| |||||||    
T  365846 aaataataaatactactaaattactaataaaatcctcctgcatca 365890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 19795106 - 19795067
Alignment:
Q  77 cgaaataataataggaagttctagaaaattactaagattt 116  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  19795106 cgaaataataatagaaagttctagaaaattactaagattt 19795067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 2472952 - 2472985
Alignment:
Q  121 aaataataaatactactaaattactaataaaacc 154  Q
    ||||||||||||||||||||||||||||||||||    
T  2472952 aaataataaatactactaaattactaataaaacc 2472985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 50857637 - 50857783
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||||||||||||||||||||| |||| |||||  |||||   |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  50857637 ataagttctgcttatatagtgaaagtaataacaaacccgtgggcc-aaataaaacaaaacgaaataataatagaaagttctagaaaattactaagatttg 50857735  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||    
T  50857736 gctaaataataaatactactaaattactaataaaaccctcctgcatca 50857783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 13444223 - 13444324
Alignment:
Q  64 aaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcttgcat 163  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  13444223 aaataaaataaaacgaaataataatagaaaattcttgaaaattactaaaatttggctaaataataaatactactaaattactaataaaatcctcctgcat 13444322  T
Q  164 ca 165  Q
    ||    
T  13444323 ca 13444324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 8931116 - 8931022
Alignment:
Q  23 ttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||||||||||||||||||||| |||||| |||||   |||||||| ||||| |||||||||||| |||||||||||||| |||||||||||    
T  8931116 ttctgcttatatagtgaaagaaataacaaactcgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaagatttg 8931022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 13441791 - 13441928
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||| ||||||||||||||||||||| |||||    |||   |||||||||||||||||||||||||||          |||||||||| ||||||    
T  13441791 ataagttcagcttatatagtgaaagaaataacaaaccctcgggtcaaaataaaataaaacgaaataataatag----------aaaattactatgatttg 13441880  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    | |||||||||||||||||||||||||||| ||||||||  |||||||    
T  13441881 gctaaataataaatactactaaattactaacaaaacccttctgcatca 13441928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 31915382 - 31915338
Alignment:
Q  121 aaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  31915382 aaataataaatactactaaattactaataaaaccctcatgcatca 31915338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 42071534 - 42071598
Alignment:
Q  39 aaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaa 103  Q
    ||||||||| ||||| | ||||  |||||||||||||||||||||||||||| ||||||||||||    
T  42071534 aaagaaataacaaacctttgggccgaaataaaataaaacgaaataataatagaaagttctagaaa 42071598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 43681292 - 43681259
Alignment:
Q  121 aaataataaatactactaaattactaataaaacc 154  Q
    ||||||||||||||||||||||||||||||||||    
T  43681292 aaataataaatactactaaattactaataaaacc 43681259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 31913233 - 31913198
Alignment:
Q  121 aaataataaatactactaaattactaataaaaccct 156  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31913233 aaatactaaatactactaaattactaataaaaccct 31913198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 42891878 - 42892012
Alignment:
Q  33 atagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaata 132  Q
    ||||||| ||||||| |||||  ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42891878 atagtgatagaaataacaaacccgtgggctaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggttaaataataaata 42891977  T
Q  133 ctactaaattactaataaaaccctcttgcatcata 167  Q
    ||||||||||||||||||||||||| |||| ||||    
T  42891978 ctactaaattactaataaaaccctcctgcaccata 42892012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 22512240 - 22512387
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||| |||||||||||||||||||||||  |||| ||||||  |||||||||| ||||||||||||||||  |||||||||||||||||||||||||     
T  22512240 ataagtgctgcttatatagtgaaagaaataataaacctgtgggccgaaataaaatgaaacgaaataataatataaagttctagaaaattactaagattta 22512339  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    | |||||||||||||||||||||||||||||||||| ||| |||||||    
T  22512340 gctaaataataaatactactaaattactaataaaactctcctgcatca 22512387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 23570484 - 23570355
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  23570484 ataagttccgcttatatagtgaaagaaataacaaacatgtgggtcgaaataaaataaaacgaaataaaaatagaaagttctagaaaattactaagatttg 23570385  T
Q  118 gttaaataataaatactactaaattactaa 147  Q
     |||||||||||||||||  ||||||||||    
T  23570384 attaaataataaatactataaaattactaa 23570355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 23573480 - 23573351
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||| |||||||||| |||||||||| ||||| |||| |  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  23573480 ataagttccgcttatatagcgaaagaaataacaaacctgtgagccgaaataaaataaaacgaaataaaaatagaaagttctagaaaattactaagatttg 23573381  T
Q  118 gttaaataataaatactactaaattactaa 147  Q
    ||||||||||||||||||  ||||||||||    
T  23573380 gttaaataataaatactataaaattactaa 23573351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 6845234 - 6845112
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| |||||| || ||   ||||||||| ||||| |||||||||||  |||| ||||||||||||||||||||    
T  6845234 ataagttctgcttatatagtgaaagaaataacaaactcgtaggccaaaataaaatcaaacgtaataataatagagagttttagaaaattactaagatttg 6845135  T
Q  118 gttaaataataaatactactaaa 140  Q
      |||||||||||||||| ||||    
T  6845134 actaaataataaatactaataaa 6845112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 18468600 - 18468508
Alignment:
Q  31 atatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaa 123  Q
    ||||||||||||||||| |||||  |||||   |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18468600 atatagtgaaagaaataacaaacccgtgggccaaaataaaacaaaacgaaataataatagaaagttctagaaaattactaagatttggttaaa 18468508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 22922043 - 22922142
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||||||| |||||||||||||||||| |||||  |||||   |||||||| ||||| |||||||||||| |||||||||||||| |||||||||||    
T  22922043 ataagttctgcatatatagtgaaagaaataacaaacccgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaagatttg 22922142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 37189759 - 37189629
Alignment:
Q  22 gttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggtta 121  Q
    |||||| |||||||| |||||||||| |||||| | | |   |||||||||||||| |||||||||||  |||||||| ||| |||||||||||||| ||    
T  37189759 gttctgtttatatagcgaaagaaataacaaactcgggagccaaaataaaataaaacaaaataataatataaagttctaaaaagttactaagatttggcta 37189660  T
Q  122 aataataaatactactaaattactaataaaac 153  Q
    || |  |||||||||||||||||||| |||||    
T  37189659 aa-ataaaatactactaaattactaagaaaac 37189629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 18180926 - 18181014
Alignment:
Q  64 aaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg-gttaaataataaatactactaaattactaataaaac 153  Q
    |||||||| |||||||||||| ||||| || ||||| ||||||| ||||||||| ||||||||  |||||||||||||||||||| |||||    
T  18180926 aaataaaacaaaacgaaataagaatagaaatttctaaaaaattattaagatttgagttaaata--aaatactactaaattactaagaaaac 18181014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 24730867 - 24730821
Alignment:
Q  119 ttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||    
T  24730867 ttaaatcataaatactactaaattactaataaaaccctcctgcatca 24730821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 42890243 - 42890182
Alignment:
Q  79 aaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaa 140  Q
    |||||||||||| ||||||||||||||||||   |||||| ||||||||| |||||| ||||    
T  42890243 aaataataatagaaagttctagaaaattacttccatttggctaaataatagatactaataaa 42890182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 22926839 - 22926874
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaac 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  22926839 ataagttctgcttatatagtgaaagaaataacaaac 22926874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 22691208 - 22691060
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaatac----caaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaaga 113  Q
    ||||||||||||||||||||||||||||||     |||||  ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  22691208 ataagttctgcttatatagtgaaagaaataaataacaaaccagtgggctgaaataaaataaaacgaaataataatacaaagttctagaaaattactaaga 22691109  T
Q  114 tttggttaaataataaatactactaaattactaataaaaccctcttgca 162  Q
    ||||| |||||||||||||||||||||||| ||||||||||||| ||||    
T  22691108 tttggctaaataataaatactactaaattattaataaaaccctcctgca 22691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 6659522 - 6659651
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| |||| |  ||||  ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  6659522 ataagttctgcttatatagtgaaagaaataacaaattcatgggccgaaataaaataaaacaaaataataatagaaagttctagaaaattactaagatttg 6659621  T
Q  118 gttaaataataaatactactaaattactaa 147  Q
    | |||||||||||||||   ||||||||||    
T  6659622 gctaaataataaatactgtaaaattactaa 6659651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 22988679 - 22988793
Alignment:
Q  39 aaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactacta 138  Q
    ||||||||| ||||  |||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||    
T  22988679 aaagaaataacaaatctgtgggctgaaataaaataaaaagaaataataatagaaagttctagaaaattattaagatttggctaaataataaatactatta 22988778  T
Q  139 aattactaataaaac 153  Q
    |||||||||||||||    
T  22988779 aattactaataaaac 22988793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 22716538 - 22716424
Alignment:
Q  39 aaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactacta 138  Q
    ||||||||| ||||   ||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||    
T  22716538 aaagaaataacaaatccgtgggctgaaataaaataaaaagaaataataatagaaagttctagaaaattattaagatttggctaaataataaatactatta 22716439  T
Q  139 aattactaataaaac 153  Q
    |||||||||||||||    
T  22716438 aattactaataaaac 22716424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 24667584 - 24667427
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagtt------ctagaaaattactaa 111  Q
    |||||||||||||||||| ||||||||||| |||||  ||||   |||||||||||||| ||||||||||||| ||| |      ||| ||||||||||     
T  24667584 ataagttctgcttatataatgaaagaaataacaaacccgtggaccgaaataaaataaaatgaaataataatagaaagatgaattactaaaaaattactac 24667485  T
Q  112 gatttggttaaataataaatactactaaattactaataaaaccctcttgcatcatatt 169  Q
    ||||||| |||||||||| ||||||||||||| ||||||| ||||| |||||||||||    
T  24667484 gatttggctaaataataactactactaaattaataataaagccctcctgcatcatatt 24667427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 13085288 - 13085417
Alignment:
Q  22 gttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggtta 121  Q
    |||||| ||| ||||  ||| ||||| |||| ||||| |  ||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||| ||    
T  13085288 gttctgtttaaatagcaaaataaataacaaatttgtgagccgaaataaaacaaaacgaaataataatagaaagttctagaatattactaagatgtggcta 13085387  T
Q  122 aataataaatactactaaattactaataaaa 152  Q
    || |  ||||||||  |||||||||| ||||    
T  13085388 aa-ataaaatactataaaattactaaaaaaa 13085417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 19935360 - 19935271
Alignment:
Q  62 tgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaa 152  Q
    |||||||||| |||||||||||||||||| |||||||  ||||| | |||||||||  |||| |  |||||||||||||||||||| ||||    
T  19935360 tgaaataaaacaaaacgaaataataatagaaagttctgaaaaatgattaagatttgactaaa-ataaaatactactaaattactaagaaaa 19935271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 21849163 - 21849310
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||  ||||||||||||||||||||| |||||  |||||  ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  21849163 ataagtttcgcttatatagtgaaagaaataacaaacccgtgggccgaaataaaataaaacaaaataaaaatagaaagttctagaaaattactaagatttg 21849262  T
Q  118 gttaaataataaatactactaaattactaataaaaccctcttgcatca 165  Q
    ||||||||||||||||||  |||||||||| ||||||||| |||||||    
T  21849263 gttaaataataaatactataaaattactaagaaaaccctcgtgcatca 21849310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 40778979 - 40779108
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||||||||||||||||||||||||||  ||||  |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40778979 ataagttctgcttatatagtgaaagaaataataaacacgtgggccgaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttg 40779078  T
Q  118 gttaaataataaatactactaaattactaa 147  Q
    | |||||||||||||||   ||||||||||    
T  40779079 gctaaataataaatactgtaaaattactaa 40779108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 21845127 - 21845229
Alignment:
Q  63 gaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcttgca 162  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  21845127 gaaataaaataaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctcttgca 21845226  T
Q  163 tca 165  Q
    |||    
T  21845227 tca 21845229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 21857122 - 21857224
Alignment:
Q  63 gaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcttgca 162  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  21857122 gaaataaaataaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctcgtgca 21857221  T
Q  163 tca 165  Q
    |||    
T  21857222 tca 21857224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 19501187 - 19501289
Alignment:
Q  63 gaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcttgca 162  Q
    ||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| |||| |  ||||||||  ||||||||||  |||||||| | ||    
T  19501187 gaaataaaacaaaacaaaataataatagaaagttttagaaaattactaagatttgggtaaa-ataaaatactataaaattactaaagaaaccctcctaca 19501285  T
Q  163 tcat 166  Q
    ||||    
T  19501286 tcat 19501289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 29341043 - 29341123
Alignment:
Q  77 cgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctc 157  Q
    |||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  29341043 cgaaataataatagaaagttttagaaaattactaagatttggctaaaaaataaatactactaaattactaataaaaccctc 29341123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 3535932 - 3535833
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| |||||  |||||   |||||||| ||||| |||||||||||| |||||||||||||| | |||||||||    
T  3535932 ataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcattaagatttg 3535833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 3542143 - 3542044
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    |||||||||||||||||||||||||||||| |||||  |||||   |||||||| ||||| |||||||||||| |||||||||||||| | |||||||||    
T  3542143 ataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcattaagatttg 3542044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 30049813 - 30049685
Alignment:
Q  17 aataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagattt 116  Q
    |||||||| |||||||||||||||||||||| |||||  || ||   |||||||| ||||| |||||||||||| |||||||||||||| ||||| ||||    
T  30049813 aataagttttgcttatatagtgaaagaaataacaaacccgtaggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaaaattt 30049714  T
Q  117 ggttaaataataaatactactaaattactaa 147  Q
    || |||  || ||||||||  ||||||||||    
T  30049713 ggctaa--aaaaaatactataaaattactaa 30049685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 11194517 - 11194428
Alignment:
Q  63 gaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaac 153  Q
    ||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||| |||| |  |||||||||||||||||||| |||||    
T  11194517 gaaataaaacaaaacaaaataatactagaaagttctagaaaattactaagatttggctaaa-ataaaatactactaaattactaagaaaac 11194428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 30052099 - 30051972
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||| |||||||||||||||||||||| |||||  || ||   |||||||| ||||| |||||||||||| |||||||||||||| ||||| |||||    
T  30052099 ataagttttgcttatatagtgaaagaaataacaaacccgtaggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaaaatttg 30052000  T
Q  118 gttaaataataaatactactaaattactaa 147  Q
    | |||  || ||||||||  ||||||||||    
T  30051999 gctaa--aaaaaatactataaaattactaa 30051972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 18726983 - 18726883
Alignment:
Q  63 gaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcttgca 162  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||| |  ||| ||||  |||||||||| ||||||||| ||||    
T  18726983 gaaataaaa-aaaacgaaataataatagaaagttctagaaaatgactaagatttggctaaa-ataaaaaactataaaattactaaaaaaaccctcctgca 18726886  T
Q  163 tca 165  Q
    |||    
T  18726885 tca 18726883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 18203318 - 18203253
Alignment:
Q  80 aataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattact 145  Q
    |||||||||||  |||||||||||||||||||||||||  ||||||||||||||||  ||||||||    
T  18203318 aataataatagagagttctagaaaattactaagatttgactaaataataaatactataaaattact 18203253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 11190392 - 11190259
Alignment:
Q  22 gttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggtta 121  Q
    |||||| ||| ||||  ||||||||| |||||| || |   ||||||||| ||||| | |||||||||| |||||||||||||||||| || ||||  ||    
T  11190392 gttctgtttaaatagcaaaagaaataacaaactcgtagaccgaaataaaacaaaacaatataataatagaaagttctagaaaattacttaggtttgacta 11190293  T
Q  122 aataataaatactactaaattactaataaaaccct 156  Q
    || |  |||||||| ||||||| ||| ||||||||    
T  11190292 aa-ataaaatactattaaattattaagaaaaccct 11190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 8050125 - 8050161
Alignment:
Q  121 aaataataaatactactaaattactaataaaaccctc 157  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  8050125 aaataataaatactactaaattactaagaaaaacctc 8050161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 46897 - 46996
Alignment:
Q  18 ataagttctgcttatatagtgaaagaaataccaaacttgtggggtgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttg 117  Q
    ||||||| |||||||||||||||||||||| |||||  || ||   |||||||| ||||| |||||||||||| |||||||||||||| ||||| |||||    
T  46897 ataagttttgcttatatagtgaaagaaataacaaacccgtaggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaaaatttg 46996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University