View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6132_high_6 (Length: 484)
Name: NF6132_high_6
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Original strand, 50614349 - 50614807
Alignment:
| Q |
11 |
catcatcaatattttgatattcattaacattatcaacttcactcaaaatttccattaaccttatgtaatggggaaaacctgaattttctgcttcattgtc |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50614349 |
catcaccaatattttgatattcattaacattatgaacttcactcagaatttccattaaccttatgtaatgggaaaaacctgaattttctgcttcattgtc |
50614448 |
T |
|
| Q |
111 |
atgtttcctcactggcaaagactgcatacggacgtcatcgtccactccatgacttgtaacgataacgtttattttatcaattaacggcactaatcaattt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50614449 |
atgtttcctcactggcaaagactgcatacggacgtcatcgtccactccatgacttgtaacgataacgttgattttatcaattaacggcactaatcaattt |
50614548 |
T |
|
| Q |
211 |
gatataactctctttttggtgatagaacccctcnnnnnnngtattctttaatctccttggcgcaatcgtcacaactaataccaaattttcaagtgaaaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
50614549 |
gatataactctctttttggtgatagaacccctctttttttgtattctttaatctccttcgcgcaaacatcacaactaataccaaattttcaagtgaaaaa |
50614648 |
T |
|
| Q |
311 |
caatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaagatgaaaattaaatatgaacaagaata |
410 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50614649 |
caatgaaacttcataacacaaattcttcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaagatgaaaattaaatatgaacaagaata |
50614748 |
T |
|
| Q |
411 |
actactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttatttt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50614749 |
actactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttatttt |
50614807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 54016493 - 54016375
Alignment:
| Q |
294 |
aattttcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaaga-tgaaaat |
392 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||| ||||| ||||||| |||| ||| | ||||||| |||||||||| |||| || | | ||||| |
|
|
| T |
54016493 |
aattttcaagtgaacaacaacgaaacttcataacatgaattcttcgtttaacatcgtgactccgtcacaattcttcataaaattgaacaatacttaaaat |
54016394 |
T |
|
| Q |
393 |
taaatatgaacaagaataa |
411 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
54016393 |
taaatatgaagaagaataa |
54016375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 444
Target Start/End: Original strand, 13108284 - 13108459
Alignment:
| Q |
270 |
gcgcaatcgtcacaactaataccaaattttcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttc |
369 |
Q |
| |
|
|||||| | ||||||| || ||| |||| ||||||| ||||| |||| ||| ||||| ||||| || ||||| || ||||||| |||||||| |||| |
|
|
| T |
13108284 |
gcgcaaacatcacaaccaagaccgaattcacaagtgagtaacaacgaaacttcttaacatgaattcttcatttagcattgcgaccccatcacaattcttc |
13108383 |
T |
|
| Q |
370 |
ataaaactgaaaaaga-tgaaaattaaatatgaacaagaataactactagaaacttgttcttcataatcggtttct |
444 |
Q |
| |
|
|| || |||||| | | ||||||||| ||||| |||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
13108384 |
atggaatcgaaaaatacttaaaattaaacatgaataagaataaaatttggaaccttgttcttcataatcggtttct |
13108459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 459
Target Start/End: Original strand, 18801296 - 18801456
Alignment:
| Q |
299 |
tcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaagatgaaaattaaata |
398 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| ||||| ||||||| || ||||||| | ||| ||||||||||| ||| || | |||||||||| |
|
|
| T |
18801296 |
tcaagtgattaacaacgaaacttcataacatgaattcttcgtttaacattgcgaccccaatgcaaaccttcataaaaccgaataatactgaaattaaata |
18801395 |
T |
|
| Q |
399 |
tgaacaagaataa-ctactagaaacttgttcttcataatcggtttcttgatcaatttcttga |
459 |
Q |
| |
|
||| ||||||||| || | ||| ||| ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
18801396 |
tgagcaagaataaacttcg-gaaccttattcttcacaatcggtttcttgataaatttcttga |
18801456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 18841642 - 18841690
Alignment:
| Q |
402 |
acaagaataactactagaaacttgttcttcataatcggtttcttgatca |
450 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| |||||||||||| |
|
|
| T |
18841642 |
acaagaataactacatgaaatttgctcttcataatcagtttcttgatca |
18841690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University