View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_high_7 (Length: 455)
Name: NF6132_high_7
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_7 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 150 - 402
Target Start/End: Original strand, 12699692 - 12699942
Alignment:
| Q |
150 |
cactactagaaaatgtacatttgacatcagggcattcacatcagtggagaaatacctgaagggaaagaactttggagaaggttttcacatcagctgatga |
249 |
Q |
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| T |
12699692 |
cactactagaaaatttacatttgacatcagggctttcacatcagtggagaaatacttgaagggaaagaactttggagaaggttttcacaccagc---tga |
12699788 |
T |
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| Q |
250 |
tgaaatgcctgaggggaataatagatattaaagagttttcacatctgtagaact-aatgcctgagggcaaagataaacgcggtggcaatttcgttatatt |
348 |
Q |
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| T |
12699789 |
ggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaaatgactgagggaaaagataaacgcggtgacaatttcgtaatatt |
12699888 |
T |
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| Q |
349 |
tttgaactttacatcaaatattgttcacatcagttgatatagtcagccgaaggg |
402 |
Q |
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| T |
12699889 |
agtgctctttacaacaaacattgttcacatcagtgaatacagtcagccgaaggg |
12699942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 6463264 - 6463206
Alignment:
| Q |
88 |
cgccactcactaaaggataacatcgagatgaaacctggatatattcaaataaaacatag |
146 |
Q |
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| T |
6463264 |
cgccactcactaaaggataacatcgagatgaaacctgcatatattcaaataaaacatag |
6463206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 31713445 - 31713489
Alignment:
| Q |
150 |
cactactagaaaatgtacatttgacatcagggcattcacatcagt |
194 |
Q |
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| T |
31713445 |
cactactagaaaatatacatttgacatcagggttttcacatcagt |
31713489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 348
Target Start/End: Original strand, 5049 - 5196
Alignment:
| Q |
199 |
aaatacctgaagggaaaga-actttggagaaggttttcacatcagctgatgatgaaatgcctgaggggaataatagatattaaagagttttcacatctgt |
297 |
Q |
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| T |
5049 |
aaatacctgatgggaaagatactttggatgaggttttcacttcaggtgaaga---aatggctgaggggaaaagtagaagcccaagagttttgacatcagt |
5145 |
T |
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| Q |
298 |
agaactaatgcctgagggcaaagataaacgcggtggcaatttcgttatatt |
348 |
Q |
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| T |
5146 |
ggaactaatgcatgaggggaaacataaacgcggtggcaattttgtaatatt |
5196 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 24167158 - 24167224
Alignment:
| Q |
149 |
ccactactagaaaatgtacatttgacatcagggcattcacatcagtggagaaatacctgaagggaaa |
215 |
Q |
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| T |
24167158 |
ccactactagaaaatatacatttaacaatagggatttcacatcagtggagaaatacatgaggggaaa |
24167224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 9809496 - 9809430
Alignment:
| Q |
282 |
gagttttcacatctgtagaactaatgcctgagggcaaagataaacgcggtggcaatttcgttatatt |
348 |
Q |
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| T |
9809496 |
gagttttgacataagtggaactaatgcatgaggggaaacataaacgcggtggcaatttcgtaatatt |
9809430 |
T |
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