View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6132_high_9 (Length: 424)

Name: NF6132_high_9
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6132_high_9
NF6132_high_9
[»] chr4 (1 HSPs)
chr4 (20-408)||(27692570-27692958)
[»] chr1 (28 HSPs)
chr1 (72-167)||(8956225-8956320)
chr1 (227-371)||(9464469-9464613)
chr1 (233-371)||(8921053-8921191)
chr1 (72-134)||(8942219-8942281)
chr1 (55-109)||(11028478-11028532)
chr1 (72-181)||(8932303-8932412)
chr1 (231-371)||(8942372-8942512)
chr1 (231-371)||(8964867-8965007)
chr1 (231-371)||(9104606-9104746)
chr1 (235-371)||(9488909-9489045)
chr1 (55-109)||(11011075-11011129)
chr1 (72-181)||(8920898-8921007)
chr1 (310-371)||(9233674-9233735)
chr1 (70-134)||(9233905-9233969)
chr1 (73-109)||(10903629-10903665)
chr1 (244-351)||(8873703-8873810)
chr1 (233-371)||(8932458-8932596)
chr1 (292-370)||(8956439-8956517)
chr1 (67-137)||(9320099-9320169)
chr1 (67-137)||(9350416-9350486)
chr1 (55-109)||(10914774-10914828)
chr1 (55-109)||(10979509-10979563)
chr1 (55-109)||(11004893-11004947)
chr1 (40-77)||(9056731-9056768)
chr1 (40-109)||(9142742-9142811)
chr1 (64-109)||(11033375-11033420)
chr1 (231-371)||(9320257-9320397)
chr1 (62-134)||(9486035-9486107)
[»] chr3 (1 HSPs)
chr3 (67-134)||(9159789-9159856)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 27692570 - 27692958
Alignment:
Q  20 ttcggtacaacttcgccaaaccaaagtcagatatctttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcat 119  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692570 ttcggtacaacttcgccaaaccaaagtcagatatctttgggtcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcat 27692669  T
Q  120 gtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatgtcgtaaattttctcatagcttaacgacgacaagtgtccttgctcttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||    
T  27692670 gtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatgtcgtagattttctcgtagcttaacgacgacaagtgtccttgctcatgt 27692769  T
Q  220 gaaaacgtgtgtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattca 319  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  27692770 gaaaacatgtgtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcagcacagaatccaaccagttgcaccacgttca 27692869  T
Q  320 catgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccattggtttgagacttattcaataccttaacagctactttg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  27692870 catgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccattggtttgagacttggtcaataccttaacagctactttg 27692958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 8956225 - 8956320
Alignment:
Q  72 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagaga 167  Q
    ||||||||||||||||||||| || |||||||| ||||  ||||||||||||||||||||||| || ||   ||||||||| | || |||||||||    
T  8956225 gtcaagaagaatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaactccaagaga 8956320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 371
Target Start/End: Original strand, 9464469 - 9464613
Alignment:
Q  227 tgtgtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacg 326  Q
    ||||||| ||||||||| | |||||||||||||| ||||| || |||   |||||| | ||  ||||||| ||||  || || |||||||| |||||  |    
T  9464469 tgtgtttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacattaacatggtg 9464568  T
Q  327 aattcttccaatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    |||  |||||||||| ||||||||||||||||| || ||||||||    
T  9464569 aatcgttccaatggtagcaacttcattgatgaattcctgtccatt 9464613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 371
Target Start/End: Original strand, 8921053 - 8921191
Alignment:
Q  233 tatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattct 332  Q
    |||||||||| ||||| |||||||| || ||||| |||||  | |||| ||  ||  ||||||||||||| ||| ||||||||||  | ||| | ||| |    
T  8921053 tatcaagagagccatttggcatgaaatcataaacaagagcacgttttgatccctcaacacaaaatccaacaagtcgcaccacattggcgtgatgtatttt 8921152  T
Q  333 tccaatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    ||| ||||||||||||||||| ||||| ||||| |||||    
T  8921153 tcctatggttgcaacttcattaatgaaatcttgcccatt 8921191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 8942219 - 8942281
Alignment:
Q  72 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 134  Q
    ||||||||| ||||||||||| || |||||||| ||||  |||||||||||||||||||||||    
T  8942219 gtcaagaagtatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatg 8942281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 11028532 - 11028478
Alignment:
Q  55 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 109  Q
    ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  11028532 tttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 11028478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 8932303 - 8932412
Alignment:
Q  72 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatg 171  Q
    ||||||||| ||||||||||| || ||||| || ||||  ||||||||||||||||||||||| || ||   ||||||||| | || ||||||||| ||     
T  8932303 gtcaagaagtatgttatgaggcttgatatcgaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaactccaagagatatc 8932402  T
Q  172 tcgtaaattt 181  Q
    ||||| ||||    
T  8932403 tcgtacattt 8932412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 371
Target Start/End: Original strand, 8942372 - 8942512
Alignment:
Q  231 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 330  Q
    |||||||||||| ||||| |||||||| || ||||| ||||||   |||| ||  ||  ||||||||||||  ||| ||||||||||    ||| | |||    
T  8942372 tttatcaagagagccattgggcatgaaatcataaacaagagctctttttgatccctcaacacaaaatccaataagtcgcaccacattggtgtgatgtatt 8942471  T
Q  331 cttccaatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    ||||| || |||||||||||||||||||| ||||| |||||    
T  8942472 cttcctattgttgcaacttcattgatgaaatcttgcccatt 8942512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 371
Target Start/End: Original strand, 8964867 - 8965007
Alignment:
Q  231 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 330  Q
    ||||||||| || ||||||| |||||| || ||||| |||||  | |||| ||  ||| ||||||| ||||  | |||||||||||||| |||| | ||     
T  8964867 tttatcaagggatccattagacatgaattcataaacaagagcacggtttgatccctcgacacaaaaaccaattaattgcaccacattcaaatgatgtatc 8964966  T
Q  331 cttccaatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    |||||||||||||| |||||||| || ||||| || |||||    
T  8964967 cttccaatggttgctacttcattaataaagtcctgcccatt 8965007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 371
Target Start/End: Complemental strand, 9104746 - 9104606
Alignment:
Q  231 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 330  Q
    |||||||||||| |||||||||||||| || ||||| |||||  | |||| ||  ||   |||||||||||  | ||| || ||||||| |||| | ||     
T  9104746 tttatcaagagatccattaggcatgaattcataaacaagagcacgttttgatccctcaatacaaaatccaaataattgtactacattcaaatgatgtatc 9104647  T
Q  331 cttccaatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    |||||||||||||| |||||| | || ||||||||||||||    
T  9104646 cttccaatggttgctacttcactaataaagtcttgtccatt 9104606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 371
Target Start/End: Original strand, 9488909 - 9489045
Alignment:
Q  235 tcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattcttc 334  Q
    |||||||||||||||||||||||||| ||||| || |||   |||||| | ||  ||||||| ||||  || || ||||| || |||||  ||||  |||    
T  9488909 tcaagagaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacgttaacatggtgaatcgttc 9489008  T
Q  335 caatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    |||| || ||||||||||||||||| || ||||||||    
T  9489009 caatcgtagcaacttcattgatgaattcctgtccatt 9489045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 11011075 - 11011129
Alignment:
Q  55 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 109  Q
    |||||||  ||||| || |||||||||||||||||||| ||||||||||||||||    
T  11011075 tttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgta 11011129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 8920898 - 8921007
Alignment:
Q  72 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatg 171  Q
    ||||||||| ||||||||||| || || ||||| ||||  |||||||||||||| |||||||| || ||   ||||||||| | || ||||||||| ||     
T  8920898 gtcaagaagtatgttatgaggcttgatgtcaaaatgtaaaatttgcatgtcacagccttgatgcaaataagcaattccacgtgcaactccaagagatatc 8920997  T
Q  172 tcgtaaattt 181  Q
    ||||| ||||    
T  8920998 tcgtacattt 8921007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 9233735 - 9233674
Alignment:
Q  310 accacattcacatgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    |||||||| |||||| | |||||||||||||| |||||||| ||||| || |||||||||||    
T  9233735 accacattaacatgatgtattcttccaatggtcgcaacttcgttgataaaatcttgtccatt 9233674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 9233969 - 9233905
Alignment:
Q  70 tcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 134  Q
    ||||| |||||||| |||||||| || |||||||| ||||  |||||||| ||||||||||||||    
T  9233969 tcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatg 9233905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 10903629 - 10903665
Alignment:
Q  73 tcaagaagaatgttatgaggttttatatcaaagtgta 109  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10903629 tcaagaagaatgttatgaggctttatatcaaagtgta 10903665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 351
Target Start/End: Complemental strand, 8873810 - 8873703
Alignment:
Q  244 ccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattcttccaatggttg 343  Q
    ||||||||||| ||||| ||||| |||||  | |||| ||  ||||  ||||||||||  | |||||||||||||| |||| | ||||| ||||||||||    
T  8873810 ccattaggcataaactcataaacaagagcacgttttgatccctcggtgcaaaatccaattaattgcaccacattcaaatgatgtattctcccaatggttg 8873711  T
Q  344 caacttca 351  Q
    | ||||||    
T  8873710 ctacttca 8873703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 371
Target Start/End: Original strand, 8932458 - 8932596
Alignment:
Q  233 tatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattct 332  Q
    |||||||||| ||||| |||||||| || ||||| |||||  | |||| | | ||  ||||||||||||| ||| ||||||||||    ||| | ||| |    
T  8932458 tatcaagagagccattgggcatgaaatcataaacaagagcacgttttgatttctcaacacaaaatccaacaagtcgcaccacattggtgtgatgtatttt 8932557  T
Q  333 tccaatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    ||| || |||||||||||| | ||||| |||||||||||    
T  8932558 tcctatagttgcaacttcactaatgaaatcttgtccatt 8932596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 8956439 - 8956517
Alignment:
Q  292 caaaatccaaccagttgcaccacattcacatgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccat 370  Q
    ||||||||||| ||| ||||||||||    ||| | ||| |||| ||||||||||||||||| ||||| ||||||||||    
T  8956439 caaaatccaacaagtcgcaccacattggtgtgatgtatttttcctatggttgcaacttcattaatgaaatcttgtccat 8956517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 9320099 - 9320169
Alignment:
Q  67 ttctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaa 137  Q
    ||||| |||||||| |||||||| || || |||||||| || |  |||||||||||||| |||||||||||    
T  9320099 ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatgtaa 9320169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 9350416 - 9350486
Alignment:
Q  67 ttctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaa 137  Q
    ||||| |||||||| |||||||| || || |||||||| || |  |||||||||||||| |||||||||||    
T  9350416 ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatgtaa 9350486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 10914774 - 10914828
Alignment:
Q  55 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 109  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  10914774 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 10914828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 10979509 - 10979563
Alignment:
Q  55 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 109  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  10979509 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 10979563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 11004947 - 11004893
Alignment:
Q  55 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 109  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  11004947 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 11004893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 9056731 - 9056768
Alignment:
Q  40 ccaaagtcagatatctttggatcaaaattctcgtcaag 77  Q
    |||||||||||||||||||||  |||||||||||||||    
T  9056731 ccaaagtcagatatctttggaataaaattctcgtcaag 9056768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 9142811 - 9142742
Alignment:
Q  40 ccaaagtcagatatctttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 109  Q
    |||||||||||||||||||||  ||| ||||| ||||| ||||| ||||| || || |||||||| ||||    
T  9142811 ccaaagtcagatatctttggaataaagttctcatcaagcagaatattatggggcttgatatcaaaatgta 9142742  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 11033375 - 11033420
Alignment:
Q  64 aaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 109  Q
    |||||||| |||||||| ||||||||||| ||||| ||||||||||    
T  11033375 aaattctcatcaagaaggatgttatgaggctttatgtcaaagtgta 11033420  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 371
Target Start/End: Original strand, 9320257 - 9320397
Alignment:
Q  231 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 330  Q
    |||||||||||| ||||| | |||||| || ||||| |||||  |||||| || |||  ||||||| ||||  ||| | ||||||||    ||| | |||    
T  9320257 tttatcaagagagccattggacatgaattcataaacaagagcacgctttgatccttcaacacaaaacccaataagtcgaaccacattggtgtgatgtatt 9320356  T
Q  331 cttccaatggttgcaacttcattgatgaagtcttgtccatt 371  Q
    ||||| |||||||| |||||| | ||||| |||||||||||    
T  9320357 cttcctatggttgcgacttcactaatgaaatcttgtccatt 9320397  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 9486107 - 9486035
Alignment:
Q  62 caaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 134  Q
    ||||||| ||||||||||||||||| ||||| || |||||||| || |  ||||||||  |||| ||||||||    
T  9486107 caaaattttcgtcaagaagaatgttgtgaggcttaatatcaaaatgcaaaatttgcataccacagccttgatg 9486035  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 9159789 - 9159856
Alignment:
Q  67 ttctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 134  Q
    |||||||||||||| |||||||| || || |||||||| || | ||||||||||||||| ||||||||    
T  9159789 ttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatg 9159856  T

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