View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_13 (Length: 362)
Name: NF6132_low_13
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 22069337 - 22069088
Alignment:
| Q |
1 |
cacttcagccgcatgagagatttgatagaaaggaaggaaagcacttcggcaataagttcatctgggaggaatacctgcaactgagatggagggaggagat |
100 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
22069337 |
cacttcagccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacctgcaactgagatggagggaggagat |
22069238 |
T |
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| Q |
101 |
tcatgttggagttttgttgttaccaacgcggtgccttttttggagaattggagctgtaacgctgaaccctaatacttgtgnnnnnnnnnnnnngacaaac |
200 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22069237 |
tcatgttggagttttgttgttaccaaggcggtgccgtttttggagaattggagctgtaacgctgaaccctaatacttgtg-ttttttatttttgacaaac |
22069139 |
T |
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| Q |
201 |
cctaatacttttgttgtttgacgaaaacaaataaagatgtgtattagtgga |
251 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22069138 |
cctagtacttttgttgtttgacgaaaacaaataaagatgtgtatttgtgga |
22069088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 22062877 - 22062703
Alignment:
| Q |
1 |
cacttcagccgcatgagagatttgatagaaaggaaggaaagcacttcggcaataagttcatctgggaggaatacctgcaactgagatggagggaggagat |
100 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
22062877 |
cacttcagccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacctgcaactgagatggagggaggagat |
22062778 |
T |
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| Q |
101 |
tcatgttggagttttgttgttaccaacgcggtgccttttttggagaattggagctgtaacgctgaaccctaatactt |
177 |
Q |
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| T |
22062777 |
tcatgatggagttttgttgttacaaaggctgtgcc--gtttggtgaattggagctgaaacgctgaaccctaatactt |
22062703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 22087837 - 22087663
Alignment:
| Q |
1 |
cacttcagccgcatgagagatttgatagaaaggaaggaaagcacttcggcaataagttcatctgggaggaatacctgcaactgagatggagggaggagat |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| || ||||||||| ||||||||||||||||||||||||||| |
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| T |
22087837 |
cacttcagccgcatgagagatttgacagaaaggaaggaaagcacttctgtgataagttcgtcggggaggaatgcctgcaactgagatggagggaggagat |
22087738 |
T |
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| Q |
101 |
tcatgttggagttttgttgttaccaacgcggtgccttttttggagaattggagctgtaacgctgaaccctaatactt |
177 |
Q |
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| T |
22087737 |
tcatattggagttttcttattaccaatacagcgcc--gtttggagaattggagctgaaacgctgaaccctaatactt |
22087663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 22069059 - 22068974
Alignment:
| Q |
248 |
tggaagacattttctcttttggataagtttgattccatannnnnnnnctataacaaacaaatgatattctttctctccaacaaaca |
333 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||| |
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| T |
22069059 |
tggaagacattttctcttttggataagtttcattccatattttttttctataacaaacaattgatatactttctctccaacaaaca |
22068974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 22080058 - 22079984
Alignment:
| Q |
1 |
cacttcagccgcatgagagatttgatagaaaggaaggaaagcacttcggcaataagttcatctgggaggaatacc |
75 |
Q |
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||||||||||| |||||||||| || || ||||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
22080058 |
cacttcagccgtatgagagattggacaggaaggaaggaaagcacttcgacaataagttcgtcagggaggaatacc |
22079984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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