View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6132_low_14 (Length: 358)
Name: NF6132_low_14
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_14 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold1779 (2 HSPs) |
| | |
|
| [»] scaffold0702 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 36841079 - 36840739
Alignment:
| Q |
20 |
gctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841079 |
gctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatac |
36840980 |
T |
|
| Q |
120 |
gaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgttggtttc--nnnnnnnnnnnnngaacac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36840979 |
gaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgttggtttctttttttttttttttgaacac |
36840880 |
T |
|
| Q |
218 |
agaatannnnnnnnacttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagccc |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840879 |
agaatattttttttacttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagccc |
36840780 |
T |
|
| Q |
318 |
gcgaattgatgtgtattcgaatcataggagctagtaatcga |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840779 |
gcgaattgatgtgtattcgaatcataggagctagtaatcga |
36840739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 18343304 - 18342966
Alignment:
| Q |
20 |
gctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343304 |
gctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatac |
18343205 |
T |
|
| Q |
120 |
gaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgttggtttcnnnnnnnnnnnnng-aacaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
18343204 |
gaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaa-aaaatggtaattgttggtttctttttttttttttgtaacaca |
18343106 |
T |
|
| Q |
219 |
gaatannnnnnnnacttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccg |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343105 |
gaatattttttttacttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccg |
18343006 |
T |
|
| Q |
319 |
cgaattgatgtgtattcgaatcataggagctagtaatcga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343005 |
cgaattgatgtgtattcgaatcataggagctagtaatcga |
18342966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 22101625 - 22101579
Alignment:
| Q |
85 |
ggctatttcaatagcggcatccaaaatgcctatacgaactcaattca |
131 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22101625 |
ggctatttcaatagcggcatccaaaatgtctatacgaactcaattca |
22101579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 164065 - 164233
Alignment:
| Q |
20 |
gctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatac |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164065 |
gctgtcgttaaacccgacaaaatactttatgaaatgggcggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctataa |
164164 |
T |
|
| Q |
120 |
gaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaatt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
164165 |
gaactcaattcattctttcagaataatcattagatcgaaataggtctttagtat-aaaaaaatgataatt |
164233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 232 - 356
Target Start/End: Original strand, 164272 - 164396
Alignment:
| Q |
232 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
164272 |
acttcaactttttgactgaaagatagtaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgtgaattgatctgt |
164371 |
T |
|
| Q |
332 |
attcgaatcataggagctagtaatc |
356 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
164372 |
attcgaatcataggagctagtaatc |
164396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 277788 - 277706
Alignment:
| Q |
267 |
atatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgtattcgaatcataggagct |
349 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || ||||| ||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
277788 |
atatgattcaacctcagacccttttaaatgtagcagacaatagtggagctcgaaaattgatgtgtattcgagtcataggagct |
277706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 232 - 358
Target Start/End: Complemental strand, 46699342 - 46699216
Alignment:
| Q |
232 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699342 |
acttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt |
46699243 |
T |
|
| Q |
332 |
attcgaatcataggagctagtaatcga |
358 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
46699242 |
attcgaatcataggagctagtaatcga |
46699216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 18375002 - 18375165
Alignment:
| Q |
26 |
gttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactc |
125 |
Q |
| |
|
|||||||| | | ||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18375002 |
gttaaacctgactaaatactttatgaaatgggggg--tcccaaaaaatatagctagaaagaatatttcaatagcggcatccaaaatgcctatacgaactc |
18375099 |
T |
|
| Q |
126 |
aattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgt |
191 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
18375100 |
aatttattctttgagaataactattagaacgaaatagatctttaatatgaaaaaaatggtaattgt |
18375165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 18375226 - 18375254
Alignment:
| Q |
267 |
atatgattcaacctcaaacctatttaaat |
295 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18375226 |
atatgattcaacctcaaacctatttaaat |
18375254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 232 - 356
Target Start/End: Complemental strand, 14249454 - 14249330
Alignment:
| Q |
232 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
14249454 |
acttcaactttttgactgaaagatagtaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgtgaattgatctgt |
14249355 |
T |
|
| Q |
332 |
attcgaatcataggagctagtaatc |
356 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14249354 |
attcgaatcataggagctagtaatc |
14249330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 346
Target Start/End: Complemental strand, 11543019 - 11542905
Alignment:
| Q |
232 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543019 |
acttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacctatttaaatatagccgataatagcggagcccgcgaattgatgtgt |
11542920 |
T |
|
| Q |
332 |
attcgaatcatagga |
346 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11542919 |
attcgaatcatagga |
11542905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 35195247 - 35195287
Alignment:
| Q |
20 |
gctgtcgttaaacccggcaaaatactttatgaaatgggagg |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195247 |
gctgtcgttaaacccggcaaaatactttatgaaatgggagg |
35195287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 404 - 524
Alignment:
| Q |
20 |
gctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatac |
119 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| | || || | ||||||||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
404 |
gctgtcgttaaaccgggcagaatactttatgaaatgagtggagtagccgaaaatatagccagaaaggctatttcaatagcggcgtcaaaaatgcctataa |
503 |
T |
|
| Q |
120 |
gaactcaattcattctttcag |
140 |
Q |
| |
|
||| ||||||||| |||||| |
|
|
| T |
504 |
aaacgcaattcattatttcag |
524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 662 - 750
Alignment:
| Q |
269 |
atgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgtattcgaatcataggagctagtaatcg |
357 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||| ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
662 |
atgattcaacctcagacccatttgaatgtagcagataacagcggggcccgagaattgatgtgtattcgagtcataggagctagtaatcg |
750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 46634463 - 46634306
Alignment:
| Q |
37 |
caaaatactttatgaaatgggaggcgtcccagaaaa-tatagctagaaaggctatttcaatagcggc-----atccaaaatgcctatacgaactcaattc |
130 |
Q |
| |
|
||||||| |||||||||||||||| | ||| |||| |||||||||||| |||||||||||||| || |||||| |||||||||| ||| ||| | |
|
|
| T |
46634463 |
caaaatattttatgaaatgggagggattccaaaaaaatatagctagaaaagctatttcaatagcagcgcgacatccaagatgcctatacaaacctaat-c |
46634365 |
T |
|
| Q |
131 |
attctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaatt |
189 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
46634364 |
attctttcagaagaataattagaaccaaatatgtctttagtataaaaaaaatggtaatt |
46634306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 46634273 - 46634212
Alignment:
| Q |
234 |
ttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaat |
295 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
46634273 |
ttcaactttttgattgaaagatagaaaaaaatgatatgattcaacctcaaacctacttaaat |
46634212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 7162 - 7202
Alignment:
| Q |
20 |
gctgtcgttaaacccggcaaaatactttatgaaatgggagg |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162 |
gctgtcgttaaacccggcaaaatactttatgaaatgggagg |
7202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University