View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_2 (Length: 739)
Name: NF6132_low_2
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 35292245 - 35291819
Alignment:
| Q |
19 |
caaaggacaatagaagaaagacacactgacaactaacatccaatatgtataattgattttgtacatatgatcacgagaggagtcttgagtatcatcaata |
118 |
Q |
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||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
35292245 |
caaaggacaatagaagaaagaaacactgacaattaacatgcaatatgtataattgattttgtatatatagtcacgagaggagtcttgagtatcatcaata |
35292146 |
T |
|
| Q |
119 |
ttgaatccagaacaatcaaacaagtaagttgaacattacatttttaatcaaaaattttaagatattgtgtttatgagttttctcatttataaagtgataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
35292145 |
ttgaatccagaacaatcaaacaagtaagttgaacatcacatctttaaccaaaaactttaagatattgtgtttataagttttctcatttataaaatgataa |
35292046 |
T |
|
| Q |
219 |
acctctatatttctaaacaatttggaatttcgaactcatatttgtttcacaataatttgttgctttaagtaaactcaattttaaagagttaactttattc |
318 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35292045 |
acctctatatttctaaacaatgtaaaatttcgaactcatatttgttttacaataatttgttgctttaagtaaactcaattttaaagatttaactttattc |
35291946 |
T |
|
| Q |
319 |
atttaaaaacaactttgcagcgtgattaacccacatttgggccatgggaaagcaattttgcgtttgtagaagttgaagcaatcgagaaaatagtttggtt |
418 |
Q |
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| T |
35291945 |
agttaaaaacaactttgcagcgtgattaacccacacttgggccatgggaaagcaattttgcgtttgtagaagttgaagcaatcgagaaaatagtttggtt |
35291846 |
T |
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| Q |
419 |
caaccaacttaaatatgcgtgatttcg |
445 |
Q |
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| T |
35291845 |
caaccaacttaaatacgcgtgatttcg |
35291819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 511 - 728
Target Start/End: Complemental strand, 35291753 - 35291536
Alignment:
| Q |
511 |
gttaaaccagtcaaaattcacatctgaatcatttcaaccatcatacaatataactgaaattaaaccaaccgataaactactcgattctcagaagaatcga |
610 |
Q |
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||||||||| ||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
35291753 |
gttaaaccaatcaaaatccgcatctgaatcatttcaaccatcttacaatctaactgaaattaaaccaaccgataaactactcgattctcatatgaatcga |
35291654 |
T |
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| Q |
611 |
tccattcgcagtttaatcgaccaactcaaacgagaattttaaccattgcttaatacattggtttttcccattttctacccagcaacgactacttcatact |
710 |
Q |
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| T |
35291653 |
tccattcgcagtttaatcaaccaactcaaacgagaattttaaccattgcttaatacattggttttttccattttctacccagcaacgactacttcatact |
35291554 |
T |
|
| Q |
711 |
ttaatcttttcccccttt |
728 |
Q |
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|||||||||||||||||| |
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| T |
35291553 |
ttaatcttttcccccttt |
35291536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 41857549 - 41857449
Alignment:
| Q |
138 |
acaagtaagttgaacattacatttttaatcaaaaattttaagatattgtgtttatgagttttctcatttataaagtgataaacctctatatttctaaaca |
237 |
Q |
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|||||| |||||||||| |||| || || | |||| |||||| |||| ||||||| || || ||||||||||| || ||||||||||||||||| |||| |
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| T |
41857549 |
acaagtgagttgaacatcacatctt-aacccaaaactttaagtcattgagtttatgggtgttatcatttataaaatgttaaacctctatatttcttaaca |
41857451 |
T |
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| Q |
238 |
at |
239 |
Q |
| |
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|| |
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| T |
41857450 |
at |
41857449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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