View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_20 (Length: 316)
Name: NF6132_low_20
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 28587792 - 28587887
Alignment:
| Q |
75 |
gtgaagcatttattgtacaaaaaggagtatacagattaaagaaagattcatgctttgtggaatcataatcaagccctcacaaaaatggagcatata |
170 |
Q |
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| T |
28587792 |
gtgaagcatttattgtacaaaaaggagtatacagattaaagaaagattcatgctctgtggaatcataatcaagccctcacaaaaatggagcatata |
28587887 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 28588116 - 28588189
Alignment:
| Q |
166 |
atataccataaatttatcagaaccataatcacacttgattaatatgcaaatgaaaaagcaatttgaaaattaac |
239 |
Q |
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| T |
28588116 |
atataccacaaatttatcagaaccataatcacacttgattaatatgcaaatgaaaaagcaatttgaaaattaac |
28588189 |
T |
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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 28589775 - 28589843
Alignment:
| Q |
232 |
aaattaacacatgcatttttacggaatcagacaaatattacaaaacagatcgtacaaatatacaaaagt |
300 |
Q |
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| T |
28589775 |
aaattaacacatgcatttttacggaatcagacaaatattacaaaacagatcatacaaatatacaaaagt |
28589843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 28587707 - 28587767
Alignment:
| Q |
13 |
tgaacatatgtatacagattaaaaaggacattagataattgttctgagaataaaaaggaca |
73 |
Q |
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| T |
28587707 |
tgaacatatgtatacagattaaaaagcacattagataattgttctgagaataaaaaggaca |
28587767 |
T |
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