View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_22 (Length: 305)
Name: NF6132_low_22
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 7306472 - 7306216
Alignment:
| Q |
20 |
ctctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaagttttgctgcaacataatatttatttcaaattatgtacttgaggttttgac |
119 |
Q |
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| T |
7306472 |
ctctatcaaggattatgtcgaaagtctggtctcaacctattgaacgtaggtttttctccaacataatatttatttcaatttatgtacttg--gtttttac |
7306375 |
T |
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| Q |
120 |
ttggtttcaattgtgtgattatttcctttactttaaaactttgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttatc |
219 |
Q |
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| T |
7306374 |
ttggtttcaattgtgcgattatttcctttactttaaaactttgccatagatatggtgaatcaatcaacggatccgaatacctttttagaactccgttatc |
7306275 |
T |
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| Q |
220 |
tatata--tataattttagccatataatgattttgcaattcaatagatagtgaatattc |
276 |
Q |
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| T |
7306274 |
tatatatatataattttagccatataatgattttgcaattcaatagataatgaatattc |
7306216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 7311024 - 7310815
Alignment:
| Q |
20 |
ctctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaagttttgctgcaacataatatttatttcaaattatgtacttg-aggttttga |
118 |
Q |
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| T |
7311024 |
ctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttttctaacataatatttatttcagtttatgtacttgttttttttta |
7310925 |
T |
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| Q |
119 |
cttggtttcaattgtgtgattatttcctttactttaaaactttgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttat |
218 |
Q |
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| T |
7310924 |
ctaggtttcgattgtatgattatttcctttactttaaaactttgtcgtag-tatggtgaatcaaccgaaggatccgaatacctgtttagaactcagttat |
7310826 |
T |
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| Q |
219 |
ctatatatata |
229 |
Q |
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|||||||||| |
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| T |
7310825 |
atatatatata |
7310815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 7328433 - 7328636
Alignment:
| Q |
19 |
actctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaagttttgctgcaacataatatttatttcaaattatgtacttgaggttttga |
118 |
Q |
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| T |
7328433 |
actctatcaaggattatgtcgaaagtctggtttcaacctgctgaaagtaagtttttctccaacataatatttatttcaatttatgtactt--agttttgc |
7328530 |
T |
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| Q |
119 |
cttggtttcaattgtgtgattatttcctttactttaaaactttgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttat |
218 |
Q |
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| T |
7328531 |
cttcgttt---atgtgtgagtatttgctttactttagaactttgtcatagatatggtgaatcaaccgactgatccgaatacgtgttcagaactcagttct |
7328627 |
T |
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| Q |
219 |
ctatatata |
227 |
Q |
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||||||||| |
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| T |
7328628 |
ctatatata |
7328636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 21218427 - 21218375
Alignment:
| Q |
121 |
tggtttcaattgtgtgattatttcctttactttaaaactttgccatagatatg |
173 |
Q |
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| T |
21218427 |
tggtttcaattgtgtgattatttcctttgcttcaaaactttgtcatagatatg |
21218375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 7328813 - 7328850
Alignment:
| Q |
237 |
ccatataatgattttgcaattcaatagatagtgaatat |
274 |
Q |
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| T |
7328813 |
ccatataatgattttgcaattcaacagatagtgaatat |
7328850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 35205713 - 35205680
Alignment:
| Q |
22 |
ctatcaaggattatgtcgaaagcctggtctcaac |
55 |
Q |
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| T |
35205713 |
ctatcaaggattatgtcgaaagcctggtttcaac |
35205680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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