View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_27 (Length: 280)
Name: NF6132_low_27
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 275
Target Start/End: Original strand, 29698352 - 29698577
Alignment:
| Q |
51 |
tcgaaacctctaaaaactatgatgcttctctcacatgttactannnnnnn-cattttcattgcttaaataataaagtatcgtgttgtgcactttgtgttc |
149 |
Q |
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| T |
29698352 |
tcgaaacctctaaaaactatgatgcttctctcacatgttactattttttttcattttcattgcttaaataataaagtatcgtgttgtgcactttgtgttc |
29698451 |
T |
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| Q |
150 |
cagtgaataaattaaaaattaatttctatgaatttaaaaattgggacggtgtcaaggtatgctatttgctaaacatgtgttgaagataatattgcttatt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29698452 |
cagtgaataaattaaaaattaatttctatgaatttaaaaattgggacggtgtcaaactatgctgtttgctaaacatgtgttgaagataatattgcttatt |
29698551 |
T |
|
| Q |
250 |
gctttagtttatgttttgatgatgtc |
275 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29698552 |
gctttagtttatgttttgatgatgtc |
29698577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 14267103 - 14267149
Alignment:
| Q |
229 |
ttgaagataatattgcttattgctttagtttatgttttgatgatgtc |
275 |
Q |
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| T |
14267103 |
ttgaagataatattgcttattcctttagtttatgtttttatgatgtc |
14267149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 11519353 - 11519311
Alignment:
| Q |
233 |
agataatattgcttattgctttagtttatgttttgatgatgtc |
275 |
Q |
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| T |
11519353 |
agataatattggttactgctttagtttatgttttgacgatgtc |
11519311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 50338835 - 50338959
Alignment:
| Q |
61 |
taaaaactatgatgcttctctcacatgttactannnnnnncattttcattgcttaaataataaagtatcgtgttgtgcactttgtgttccagtgaataaa |
160 |
Q |
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||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
50338835 |
taaaaactacgatgcttctctcacatgttactattttc--catttccatttcttaaataataaagtatcgtgttgtttactt-gtgttccagtgaataag |
50338931 |
T |
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| Q |
161 |
ttaaaaattaatttctatgaatttaaaa |
188 |
Q |
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||||||||||||||| | |||||||||| |
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| T |
50338932 |
ttaaaaattaatttccacgaatttaaaa |
50338959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 23295014 - 23295055
Alignment:
| Q |
234 |
gataatattgcttattgctttagtttatgttttgatgatgtc |
275 |
Q |
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| T |
23295014 |
gataatattgcttattgctttagtttatattttgatgatgtc |
23295055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 23576531 - 23576488
Alignment:
| Q |
232 |
aagataatattgcttattgctttagtttatgttttgatgatgtc |
275 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
23576531 |
aagataatattgctcattgctttagtttatgttttgatgatgtc |
23576488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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