View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_28 (Length: 277)
Name: NF6132_low_28
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 53066075 - 53065823
Alignment:
| Q |
9 |
agcacagaggaggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagcttctttatgatggtgagaagccaaaagaaa |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53066075 |
agcacaaaggaggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagcttctttatgatggtgagaagccaaaagaaa |
53065976 |
T |
|
| Q |
109 |
ccaaatgcccgatttacgcaaagacgttggaaggtaactctctctgctgtttttgcatttgatcaaataaccgcagcttatggttgtttcttctcttgtt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53065975 |
tcaaatgcccgatttacgcaaagacgttggaaggtaactctctctgctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtt |
53065876 |
T |
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| Q |
209 |
tcatatggaataataaacagtctataacaagctgaaagatatagatacaatag |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53065875 |
tcatatggaataataaacagtctataacaagctgaaagatatagatacaatag |
53065823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 53331246 - 53331501
Alignment:
| Q |
9 |
agcacagaggaggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagcttctttatgatggtgagaagccaaaagaaa |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||| |
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| T |
53331246 |
agcacaaaggaggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtaccgagggagatctgctttatgatggtgagaagccaaaagaat |
53331345 |
T |
|
| Q |
109 |
ccaaatgcccgatttacgcaaagacgttggaaggtaactctctct---gctgtttttgcatttgatcaaataaccgcagcttatggttgtttcttctctt |
205 |
Q |
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| T |
53331346 |
tcgaatgcccggtttacgcagagacattgaaaggtaactctctctctctctctgcttgcatttggtcaaataacctcagcttatggttgtttattctctt |
53331445 |
T |
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| Q |
206 |
gtttcatatggaataataaacagtctataacaagctgaaagatatagatacaatag |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53331446 |
gtttcatatggaataataaacagtctataacaagctgaaagatatagatacaatag |
53331501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 53334930 - 53335185
Alignment:
| Q |
9 |
agcacagaggaggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagcttctttatgatggtgagaagccaaaagaaa |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||| |
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| T |
53334930 |
agcacaaaggaggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtaccgagggagatctgctttatgatggtgagaagccaaaagaat |
53335029 |
T |
|
| Q |
109 |
ccaaatgcccgatttacgcaaagacgttggaaggtaactctctct---gctgtttttgcatttgatcaaataaccgcagcttatggttgtttcttctctt |
205 |
Q |
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| T |
53335030 |
tcgaatgcccggtttacgcagagacattgaaaggtaactctctctctctctctgcttgcatttggtcaaataacctcagcttatggttgtttattctctt |
53335129 |
T |
|
| Q |
206 |
gtttcatatggaataataaacagtctataacaagctgaaagatatagatacaatag |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53335130 |
gtttcatatggaataataaacagtctataacaagctgaaagatatagatacaatag |
53335185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 53338607 - 53338862
Alignment:
| Q |
9 |
agcacagaggaggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagcttctttatgatggtgagaagccaaaagaaa |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||| |
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| T |
53338607 |
agcacaaaggaggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtaccgagggagatctgctttatgatggtgagaagccaaaagaat |
53338706 |
T |
|
| Q |
109 |
ccaaatgcccgatttacgcaaagacgttggaaggtaactctctct---gctgtttttgcatttgatcaaataaccgcagcttatggttgtttcttctctt |
205 |
Q |
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| |||||||| |||||||| |||| ||| ||||||||||||||| || | ||||||||| |||||||||| |||||||||||||||| ||||||| |
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| T |
53338707 |
tcgaatgcccggtttacgcagagacattgaaaggtaactctctctctctctctgcttgcatttggtcaaataacctcagcttatggttgtttattctctt |
53338806 |
T |
|
| Q |
206 |
gtttcatatggaataataaacagtctataacaagctgaaagatatagatacaatag |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53338807 |
gtttcatatggaataataaacagtctataacaagctgaaagatatagatacaatag |
53338862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 53073028 - 53072963
Alignment:
| Q |
24 |
cttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagcttctttatgatg |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
53073028 |
cttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgagggagagc-tctttatgatg |
53072963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 53072929 - 53072870
Alignment:
| Q |
146 |
ctctctctgctgtttttgcatttgatcaaataaccgcagcttatggttgtttcttctctt |
205 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53072929 |
ctctctctgctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctctt |
53072870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 53356799 - 53356833
Alignment:
| Q |
227 |
agtctataacaagctgaaagatatagatacaatag |
261 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
53356799 |
agtctataataagctgaaagatatagatacaatag |
53356833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 53066114 - 53066074
Alignment:
| Q |
24 |
cttctccatgggaagaagccaaaggagcaaaaagtagaaag |
64 |
Q |
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||||| ||||||||||||| |||||||||||||||||||| |
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| T |
53066114 |
cttcttcatgggaagaagcggaaggagcaaaaagtagaaag |
53066074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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