View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_3 (Length: 668)
Name: NF6132_low_3
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 257 - 657
Target Start/End: Complemental strand, 26779459 - 26779079
Alignment:
| Q |
257 |
ctgcattttttagacatagatataaatattattttcattaacttccatctcttacctcttgt-ataaaaccttgtaaggtcaagctaccctttaactcta |
355 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26779459 |
ctgcattttttagacatggatataaatattattttcattaacttccatctcttacctcttgttataaaaccttgtaaggtcaagctaccctttaactcta |
26779360 |
T |
|
| Q |
356 |
atttttcttcccttcaaagcatttgaaaagacgtagttgtccttcattgctttccattatgatggatttgcttttctccgttgctttctaatgaacgaca |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26779359 |
atttttcttcccttcaaagcatttgaaaagacgtagttgtccttcattgctttccattatgatggatttgcttttctccgttgctttctaat-------- |
26779268 |
T |
|
| Q |
456 |
tttaacatgtcataattagttgtgtcataaatgaactttaacgcgcttttatgactggaggttaagtatttgaaattcgaattcaaaattaatctctctc |
555 |
Q |
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| T |
26779267 |
-------------aattagttgtgtcataaatgaactttaacgcgcttttatgactggaggttaagtatttgaaattcgaattcaaaattaatctctctc |
26779181 |
T |
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| Q |
556 |
tcaaatataagaactacgcatgcatccactcattcctctataaattaataactttgcctttgggaatctctcatttgtcaactcattgtcttttgttgtt |
655 |
Q |
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| T |
26779180 |
tcaaatataagaattacgcatgcatccactcattcctctataaattaataactttgcctttgggtatctctcatttgtcaactcattgtcttttgttgtt |
26779081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 257 - 657
Target Start/End: Complemental strand, 26781484 - 26781104
Alignment:
| Q |
257 |
ctgcattttttagacatagatataaatattattttcattaacttccatctcttacctcttgt-ataaaaccttgtaaggtcaagctaccctttaactcta |
355 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26781484 |
ctgcattttttagacatggatataaatattattttcattaacttccatctcttacctcttgttataaaaccttgtaaggtcaagctaccctttaactcta |
26781385 |
T |
|
| Q |
356 |
atttttcttcccttcaaagcatttgaaaagacgtagttgtccttcattgctttccattatgatggatttgcttttctccgttgctttctaatgaacgaca |
455 |
Q |
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| T |
26781384 |
atttttcttcccttcaaagcatttgaaaagacgtagttgtccttcattgctttccattatgatggatttgcttttctccgttgctttcta---------- |
26781295 |
T |
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| Q |
456 |
tttaacatgtcataattagttgtgtcataaatgaactttaacgcgcttttatgactggaggttaagtatttgaaattcgaattcaaaattaatctctctc |
555 |
Q |
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| T |
26781294 |
-----------ataattagttgtgtcataaatgaactttaacgtgcttttatgactggaggttaagtatttgaaattcgaattcaaaattaatctctctc |
26781206 |
T |
|
| Q |
556 |
tcaaatataagaactacgcatgcatccactcattcctctataaattaataactttgcctttgggaatctctcatttgtcaactcattgtcttttgttgtt |
655 |
Q |
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| T |
26781205 |
tcaaatataagaattacgcatgcatccactcattcctctataaattaataactttgcctttgggtatctctcatttgtcaactcattgtcttttgttgtt |
26781106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 26779702 - 26779527
Alignment:
| Q |
19 |
caaggaatcttttatatcattacatatgctttgtttgttatgaagattttgaaatgcaacatgactatcataaattagtgcaaaaaagccttgaatccct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26779702 |
caaggaatcttttatatcattacatatgctttgtttgttatgaagattttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccct |
26779603 |
T |
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| Q |
119 |
ttgctaatttgggacata---catctatgaaagtgctccttatgtattgtctatttttcttttgcatgtgacaaac |
191 |
Q |
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| T |
26779602 |
ttgctaatttgggacatacatcatctatgacagtgctccttatgtattgtctatttttgttttgcatgtgacaaac |
26779527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 26781727 - 26781552
Alignment:
| Q |
19 |
caaggaatcttttatatcattacatatgctttgtttgttatgaagattttgaaatgcaacatgactatcataaattagtgcaaaaaagccttgaatccct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26781727 |
caaggaatcttttatatcattacatatgctttgtttgttatgaagattttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccct |
26781628 |
T |
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| Q |
119 |
ttgctaatttgggacata---catctatgaaagtgctccttatgtattgtctatttttcttttgcatgtgacaaac |
191 |
Q |
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| T |
26781627 |
ttgctaatttgggacatacatcatctatgacagtgctccttatgtattgtctatttttgttttgcatgtgacaaac |
26781552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 661
Target Start/End: Original strand, 22818769 - 22818854
Alignment:
| Q |
575 |
atgcatccactcattcctctataaattaataactttgcctttgggaatctctcatttgtcaactcattgtcttttgttgttcatctc |
661 |
Q |
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||||||||| || || ||||||||||| | | |||||| ||||| | ||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
22818769 |
atgcatccattcgttactctataaattcaaatctttgcttttggta-tctctcatttgtcaactcaccgtcctttattgttcatctc |
22818854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 26450672 - 26450634
Alignment:
| Q |
452 |
gacatttaacatgtcataattagttgtgtcataaatgaa |
490 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
26450672 |
gacatttaacgtgtcataattagttgtgtcataaatgaa |
26450634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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