View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_30 (Length: 255)
Name: NF6132_low_30
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 34219400 - 34219169
Alignment:
| Q |
10 |
aagaatatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagacatcagatttcacc |
109 |
Q |
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| T |
34219400 |
aagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagacatcagatttcacc |
34219301 |
T |
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| Q |
110 |
gagaaaaatccacgtgctgcatactctggagatatgtaaccactgnnnnnnnnnnnnnnnnnnnnnngacggaacagatacggggcttaggaaaagagta |
209 |
Q |
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| T |
34219300 |
gagaaaaatccacgtgctgcatactctggagatatgtaaccactgaaacaaataataaagaaaaaaagacggaacagatacggggcttaggaaaagagta |
34219201 |
T |
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| Q |
210 |
gtgaatatttctaatttatgaagcaacaaatt |
241 |
Q |
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| T |
34219200 |
gtgaatatttataatttatgaagcaacaaatt |
34219169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 34208230 - 34208100
Alignment:
| Q |
24 |
catgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagacatcagatttcaccgagaaaaatccacg |
123 |
Q |
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| T |
34208230 |
catgatggtcactatattccctgttcttttttccagttattgtctctagtataataacaccgaaactaaagacatctgatttcacggagaaaaatccacg |
34208131 |
T |
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| Q |
124 |
tgctgcatactctggagatatgtaaccactg |
154 |
Q |
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| T |
34208130 |
tgctgcatactctggagatatgtaaccactg |
34208100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 34192256 - 34192400
Alignment:
| Q |
10 |
aagaatatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagacatcagatttcacc |
109 |
Q |
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||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
34192256 |
aagaagatcaagatcatcatagtcacaatattcccggttcttgtttccactaattgtctctagtataataacgccaaaactaaagacatcagatttcacc |
34192355 |
T |
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| Q |
110 |
gagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
154 |
Q |
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| T |
34192356 |
gagaaaaatccacgtgtcgcgaattctggagacatgtaaccactg |
34192400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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