View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_low_31 (Length: 251)
Name: NF6132_low_31
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28593525 - 28593284
Alignment:
| Q |
1 |
tagtagggttagtggctgcaccaagtattgtaggtagtttagttggtttgttcataaagaaaatcaaaattaggttaagaagaagttcttattgtgaaag |
100 |
Q |
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| T |
28593525 |
tagtagggttagtggctgcaccaagtattgtaggtagtttggttggtttgttcataaagaaaatcaaaattaggttaagaagaagttcttattgtgaaag |
28593426 |
T |
|
| Q |
101 |
actatgtgaacaacttgatgctgctgcaaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaagtg |
200 |
Q |
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| T |
28593425 |
actatgtgaacaacttgatgctgctgcaaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaagtg |
28593326 |
T |
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| Q |
201 |
gagcatagtaaaatggttgctgatgtttgtgtgaagaataat |
242 |
Q |
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| T |
28593325 |
gagcataggaaaatttttgctgatgtttgtgtgaagaataat |
28593284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 8358065 - 8358286
Alignment:
| Q |
6 |
gggttagtggctgcaccaagtattgtaggtagtttagttggtttgttcataaagaaaatcaaaattaggttaagaagaagttcttattgtgaaagactat |
105 |
Q |
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| T |
8358065 |
gggttagtggctgcaccaagtattgtaggtggtttagttggtttgttcataaagagaataaaaaatag---------aa---ctaattgcgaaagactat |
8358152 |
T |
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| Q |
106 |
gtgaacaacttgatgctgctgcaaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaagtggagca |
205 |
Q |
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| T |
8358153 |
gtgaacaacttgatgctgctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaggtggaaca |
8358252 |
T |
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| Q |
206 |
tagtaaaatggttgctgatgtttgtgtgaagaat |
239 |
Q |
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| T |
8358253 |
tagaaaaatggttgctcaagtttgtgtgaagaat |
8358286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 53447710 - 53447857
Alignment:
| Q |
92 |
ttgtgaaagactatgtgaacaacttgatgctgctgcaaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaat |
191 |
Q |
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|||||||| ||||| ||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
53447710 |
ttgtgaaaaactatatgaacaaattgatgttgctgcaaaaggggtttatatagtgataaatgatttggatactatgagccgtatggttaagaggttagcg |
53447809 |
T |
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| Q |
192 |
gatgaagtggagcatagtaaaatggttgctgatgtttgtgtgaagaat |
239 |
Q |
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| T |
53447810 |
gatgaggttgaacattgtagagaggttgctgatatttgtgtgaagaat |
53447857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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