View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6132_low_40 (Length: 237)

Name: NF6132_low_40
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6132_low_40
NF6132_low_40
[»] chr1 (4 HSPs)
chr1 (1-218)||(32581880-32582097)
chr1 (55-218)||(32631180-32631343)
chr1 (54-218)||(32600066-32600230)
chr1 (55-218)||(32657069-32657235)
[»] chr5 (1 HSPs)
chr5 (54-203)||(21016101-21016251)
[»] chr6 (2 HSPs)
chr6 (54-203)||(26398163-26398313)
chr6 (161-218)||(26404661-26404718)
[»] chr8 (3 HSPs)
chr8 (61-206)||(41163709-41163855)
chr8 (95-218)||(41146980-41147103)
chr8 (78-218)||(41171844-41171984)
[»] scaffold0259 (1 HSPs)
scaffold0259 (179-218)||(21394-21433)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 32581880 - 32582097
Alignment:
Q  1 cggggtggggggtggagtttagcagcccctccaaggaggatgcagtaaacaacagcagcctctacaagttcttcctcaaatggcttatcacactgttttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32581880 cggggtggggggtggagtttagcagcccctccaaggaggatgcagtaaacaacaggagcctctacaagttcttcctcaaatggcttatcacactgttttg 32581979  T
Q  101 tcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32581980 tcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattc 32582079  T
Q  201 aaattcgatttcgtcatc 218  Q
    ||||||||||||||||||    
T  32582080 aaattcgatttcgtcatc 32582097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 32631180 - 32631343
Alignment:
Q  55 gcagcctctacaagttcttcctcaaatggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattg 154  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32631180 gcagcttctacaatttcttcctcaaatggcttatcacactgttttgtctacttaaaatcaaagcattacttgttctctgaacactccttgaattcaattg 32631279  T
Q  155 atggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatc 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32631280 atggacgctggatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatc 32631343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 54 - 218
Target Start/End: Original strand, 32600066 - 32600230
Alignment:
Q  54 agcagcctctacaagttcttcctcaaatggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaatt 153  Q
    |||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  32600066 agcagcttctacaagttctttctcaaatggcttatcacactgtcttgtctacttaaaatcaaagtattacttgttctctgaacactccttgaattcaatt 32600165  T
Q  154 gatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatc 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32600166 gttggacgcttgatagctttcctcccgaaaccatcaccaaaagatccaaattcgatttcgtcatc 32600230  T

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Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 32657069 - 32657235
Alignment:
Q  55 gcagcctctacaagttcttcctcaaatggc---ttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaa 151  Q
    ||||| ||| ||| ||||||||||||||||   |||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  32657069 gcagcttctccaatttcttcctcaaatggcggcttatcagactgttttgtctacttaaaatcaaagcattacttgttctctgagcactccttgaattcaa 32657168  T
Q  152 ttgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32657169 ttgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatc 32657235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 21016251 - 21016101
Alignment:
Q  54 agcagcctctacaagttcttcctcaaa-tggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaat 152  Q
    |||||| ||||| |||| ||||||||| ||||||| |||||||||||||| ||| |||||||||||||| | | ||||||||||||||| |||| || ||    
T  21016251 agcagcttctacgagtttttcctcaaaatggcttaccacactgttttgtctactcaaaatcaaagcattgcgtgttctctgaacactccatgaaatccat 21016152  T
Q  153 tgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaa 203  Q
     |||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  21016151 agatggatgcttgatagctttcctcccgaaaccatcaccaaatgatccaaa 21016101  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 26398163 - 26398313
Alignment:
Q  54 agcagcctctacaagttcttcctcaaa-tggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaat 152  Q
    |||||| ||||| |||| ||||||||| ||||||| |||||||||||||| ||| |||||||||||||| | | ||||||||||||||| |||| ||  |    
T  26398163 agcagcatctacgagtttttcctcaaaatggcttaccacactgttttgtctactcaaaatcaaagcattgcgtgttctctgaacactccatgaaatccgt 26398262  T
Q  153 tgatggacgcttgatagctttcctcccgaaaccatcaccaaaagattcaaa 203  Q
     |||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  26398263 agatggatgcttgatagctttcctcccgaaaccatcaccaaatgatccaaa 26398313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 26404661 - 26404718
Alignment:
Q  161 gcttgatagctttcctcccgaaaccatcaccaaaagattcaaattcgatttcgtcatc 218  Q
    |||||||||||||||   | |||||||||||||||||||||||||| | |||||||||    
T  26404661 gcttgatagctttcccttcaaaaccatcaccaaaagattcaaattccacttcgtcatc 26404718  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 41163709 - 41163855
Alignment:
Q  61 tctacaagttcttcctcaaa-tggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattgatgga 159  Q
    |||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||   | ||||||||| ||||| ||||||| || ||||||    
T  41163709 tctacaagttcttcctcaaaatggcttatcacactgtcttgtctactcaaaatcaaagcattgtgtgttctctgaatactccatgaattccatagatgga 41163808  T
Q  160 cgcttgatagctttcctcccgaaaccatcaccaaaagattcaaattc 206  Q
     |||||||||||||| |||| ||||||| |||||| ||| |||||||    
T  41163809 tgcttgatagctttcatcccaaaaccataaccaaacgatccaaattc 41163855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 41146980 - 41147103
Alignment:
Q  95 gttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattgatggacgcttgatagctttcctcccgaaaccatcaccaaa 194  Q
    |||||||| ||| |||||||||||||| ||| ||||||| ||||||| ||||||| || |||||| |||||||||||||||| |||||||||||| ||||    
T  41146980 gttttgtctactcaaaatcaaagcattgcttgttctctgtacactccatgaattccatagatggatgcttgatagctttccttccgaaaccatcatcaaa 41147079  T
Q  195 agattcaaattcgatttcgtcatc 218  Q
    |||| ||||||| | |||||||||    
T  41147080 agatccaaattccacttcgtcatc 41147103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 41171844 - 41171984
Alignment:
Q  78 aaatggcttatcacactgttttgtcaacttaaaatcaaagcattacttattctctgaacactccttgaattcaattgatggacgcttgatagctttcctc 177  Q
    |||||||||||| ||||  |||||| ||| ||| |||||||||| ||| |||||||||||||||  | | || ||  ||||| |||| ||||||| ||||    
T  41171844 aaatggcttatcgcacttctttgtctactcaaagtcaaagcattgcttgttctctgaacactccaagtaatccatatatggatgcttcatagcttccctc 41171943  T
Q  178 ccgaaaccatcaccaaaagattcaaattcgatttcgtcatc 218  Q
    || |||||||||||||||||| ||||||| | |||||||||    
T  41171944 ccaaaaccatcaccaaaagatccaaattcaacttcgtcatc 41171984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 21394 - 21433
Alignment:
Q  179 cgaaaccatcaccaaaagattcaaattcgatttcgtcatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21394 cgaaaccatcaccaaaagattcaaattcgatttcgtcatc 21433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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