View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6132_low_41 (Length: 236)

Name: NF6132_low_41
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6132_low_41
NF6132_low_41
[»] chr8 (10 HSPs)
chr8 (1-214)||(2021884-2022097)
chr8 (119-166)||(2053868-2053915)
chr8 (120-166)||(2028085-2028131)
chr8 (120-166)||(10767260-10767306)
chr8 (120-165)||(1950865-1950910)
chr8 (119-166)||(2032621-2032668)
chr8 (119-174)||(2049854-2049909)
chr8 (120-166)||(2036676-2036722)
chr8 (120-166)||(2046053-2046099)
chr8 (118-158)||(15684372-15684412)
[»] chr2 (3 HSPs)
chr2 (121-171)||(28713715-28713765)
chr2 (121-171)||(28743615-28743665)
chr2 (121-168)||(28736989-28737036)
[»] chr4 (1 HSPs)
chr4 (120-166)||(48909126-48909172)
[»] chr1 (3 HSPs)
chr1 (119-165)||(16419770-16419816)
chr1 (119-168)||(16499343-16499392)
chr1 (119-159)||(16443104-16443144)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2022097 - 2021884
Alignment:
Q  1 ttgatgaatatcaacaagatcaatagaaggaataacaagtttgtggctgttgcttgaacttgaagttgagtccttgtcgaattcgtgatggaacatgcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022097 ttgatgaatatcaacaagatcaatagaaggaataacaagtttgtggctgttgcttgaacttgaagttgagtccttgtcgaattcgtgatggaacatgcga 2021998  T
Q  101 gggatgcttgtgacagaagcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgagctcacttgctctatcatagtcatgttttgttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2021997 gggatgcttgtgacagaagcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgagctcacttgctctatcatagtcatgttttgttg 2021898  T
Q  201 tcattgaaatttca 214  Q
    ||||||||||||||    
T  2021897 tcattgaaatttca 2021884  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 2053915 - 2053868
Alignment:
Q  119 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 166  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  2053915 gcatcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 2053868  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 2028131 - 2028085
Alignment:
Q  120 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 166  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  2028131 catcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 2028085  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 10767306 - 10767260
Alignment:
Q  120 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 166  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  10767306 catcaacaagtccttttacaccagcttttgtttcatcaaatgctttg 10767260  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 1950865 - 1950910
Alignment:
Q  120 catcaacaagtcctttgacaccatcttttgtttcatcaaatgcttt 165  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  1950865 catcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 1950910  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 2032668 - 2032621
Alignment:
Q  119 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 166  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  2032668 gcatcaacaagtccttttacaccagcttttgtttcatcaaattctttg 2032621  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 2049909 - 2049854
Alignment:
Q  119 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgagctcact 174  Q
    ||||||||||||||||| |||||  |||||||||||||||||||| || |||||||    
T  2049909 gcatcaacaagtccttttacacctgcttttgtttcatcaaatgctatgcgctcact 2049854  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 2036722 - 2036676
Alignment:
Q  120 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 166  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||    
T  2036722 catcaacaagtcctttcacaccagattttgtttcatcaaatgctttg 2036676  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 2046099 - 2046053
Alignment:
Q  120 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 166  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||    
T  2046099 catcaacaagtcctttcacaccagattttgtttcatcaaatgctttg 2046053  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 15684372 - 15684412
Alignment:
Q  118 agcatcaacaagtcctttgacaccatcttttgtttcatcaa 158  Q
    |||||||||||||||||| ||||| ||||||| ||||||||    
T  15684372 agcatcaacaagtccttttacaccttcttttgattcatcaa 15684412  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 28713715 - 28713765
Alignment:
Q  121 atcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgagctc 171  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  28713715 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagctc 28713765  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 28743615 - 28743665
Alignment:
Q  121 atcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgagctc 171  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  28743615 atcaacaaggcctttaacaccagcttttgtttcatcaaatgctttgagctc 28743665  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 28736989 - 28737036
Alignment:
Q  121 atcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgag 168  Q
    ||||||||| ||||| |||||| ||||| |||||||||||||||||||    
T  28736989 atcaacaaggcctttaacaccagcttttctttcatcaaatgctttgag 28737036  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 48909126 - 48909172
Alignment:
Q  120 catcaacaagtcctttgacaccatcttttgtttcatcaaatgctttg 166  Q
    ||||||||| |||||| |||| | |||||||||||||||||||||||    
T  48909126 catcaacaaatccttttacactagcttttgtttcatcaaatgctttg 48909172  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 16419770 - 16419816
Alignment:
Q  119 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgcttt 165  Q
    ||||||||||||||||| ||||||  ||||||||||||||| |||||    
T  16419770 gcatcaacaagtccttttacaccaaattttgtttcatcaaaagcttt 16419816  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 16499392 - 16499343
Alignment:
Q  119 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgctttgag 168  Q
    ||||||||||||||||| ||||||  |||||| |||||||| ||||||||    
T  16499392 gcatcaacaagtcctttaacaccaagttttgtatcatcaaaagctttgag 16499343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 16443104 - 16443144
Alignment:
Q  119 gcatcaacaagtcctttgacaccatcttttgtttcatcaaa 159  Q
    ||||||||||||||||| ||||||  |||||||||||||||    
T  16443104 gcatcaacaagtcctttaacaccaagttttgtttcatcaaa 16443144  T

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