View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6132_low_8 (Length: 451)

Name: NF6132_low_8
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6132_low_8
NF6132_low_8
[»] scaffold0045 (2 HSPs)
scaffold0045 (106-246)||(77019-77158)
scaffold0045 (288-327)||(76938-76977)
[»] chr3 (12 HSPs)
chr3 (93-175)||(19622129-19622211)
chr3 (93-174)||(17350013-17350094)
chr3 (93-174)||(39133141-39133222)
chr3 (196-246)||(19622231-19622281)
chr3 (121-175)||(25583265-25583319)
chr3 (106-174)||(11219567-11219635)
chr3 (106-174)||(32979225-32979293)
chr3 (288-327)||(19622329-19622368)
chr3 (100-175)||(21128056-21128131)
chr3 (93-174)||(7483436-7483517)
chr3 (293-330)||(35174141-35174178)
chr3 (130-174)||(20314672-20314716)
[»] chr1 (13 HSPs)
chr1 (93-167)||(49141414-49141488)
chr1 (93-147)||(9633899-9633953)
chr1 (93-144)||(52742917-52742968)
chr1 (93-147)||(44977345-44977399)
chr1 (106-174)||(50678500-50678567)
chr1 (100-147)||(21277125-21277172)
chr1 (100-147)||(51726782-51726829)
chr1 (106-147)||(8092735-8092776)
chr1 (110-174)||(22766731-22766795)
chr1 (93-174)||(26056058-26056139)
chr1 (118-175)||(40811401-40811458)
chr1 (93-174)||(51218877-51218958)
chr1 (110-146)||(23082065-23082101)
[»] chr8 (20 HSPs)
chr8 (93-174)||(44103206-44103288)
chr8 (93-174)||(13513544-13513625)
chr8 (93-174)||(13603077-13603158)
chr8 (93-174)||(21961947-21962028)
chr8 (93-175)||(36938805-36938886)
chr8 (93-146)||(117172-117225)
chr8 (93-146)||(39546616-39546669)
chr8 (93-147)||(7486201-7486255)
chr8 (93-174)||(37276154-37276235)
chr8 (100-175)||(24069356-24069431)
chr8 (100-147)||(10052235-10052282)
chr8 (100-147)||(13366988-13367035)
chr8 (93-172)||(21670188-21670267)
chr8 (100-147)||(36070309-36070356)
chr8 (121-167)||(38789192-38789238)
chr8 (100-174)||(44606270-44606344)
chr8 (100-175)||(7770808-7770883)
chr8 (100-175)||(7796718-7796793)
chr8 (100-175)||(7815999-7816074)
chr8 (100-175)||(34617105-34617180)
[»] chr7 (6 HSPs)
chr7 (93-147)||(14109009-14109063)
chr7 (93-147)||(14418966-14419020)
chr7 (100-175)||(26406256-26406331)
chr7 (93-147)||(4167575-4167629)
chr7 (93-174)||(24494962-24495043)
chr7 (93-147)||(38406142-38406195)
[»] chr2 (11 HSPs)
chr2 (93-147)||(7983633-7983687)
chr2 (100-175)||(28109779-28109854)
chr2 (93-147)||(29424550-29424604)
chr2 (93-174)||(14714616-14714697)
chr2 (93-174)||(26205137-26205218)
chr2 (106-174)||(3528176-3528244)
chr2 (106-174)||(12853023-12853091)
chr2 (100-139)||(3532325-3532364)
chr2 (100-147)||(25570808-25570855)
chr2 (100-138)||(45047473-45047511)
chr2 (93-174)||(4512230-4512311)
[»] chr4 (14 HSPs)
chr4 (106-175)||(38370420-38370489)
chr4 (124-246)||(41401561-41401682)
chr4 (195-246)||(87015-87066)
chr4 (288-327)||(87107-87146)
chr4 (288-327)||(41401473-41401512)
chr4 (100-175)||(26393037-26393112)
chr4 (93-136)||(86927-86970)
chr4 (93-147)||(35787920-35787974)
chr4 (93-147)||(39592227-39592281)
chr4 (106-174)||(44302857-44302925)
chr4 (407-439)||(87202-87234)
chr4 (407-439)||(41401365-41401397)
chr4 (93-145)||(47668537-47668589)
chr4 (100-175)||(56000418-56000493)
[»] scaffold0015 (1 HSPs)
scaffold0015 (93-174)||(207709-207790)
[»] chr5 (5 HSPs)
chr5 (93-147)||(7426765-7426819)
chr5 (288-330)||(32734448-32734490)
chr5 (100-175)||(15856664-15856739)
chr5 (106-174)||(18693835-18693903)
chr5 (106-174)||(21387774-21387842)
[»] scaffold0098 (1 HSPs)
scaffold0098 (93-139)||(41032-41078)
[»] chr6 (5 HSPs)
chr6 (93-147)||(18139425-18139479)
chr6 (100-147)||(293578-293625)
chr6 (100-147)||(14328712-14328759)
chr6 (100-147)||(14421722-14421769)
chr6 (93-135)||(13507121-13507163)
[»] scaffold0084 (1 HSPs)
scaffold0084 (93-139)||(13150-13196)
[»] scaffold0051 (1 HSPs)
scaffold0051 (93-174)||(39812-39893)


Alignment Details
Target: scaffold0045 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 77158 - 77019
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgatannnnnnnncnnnnnnngatccgttggatca 205  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        |       || | |||||||||    
T  77158 taaggtgaaccatatttaaaggtggtccaccattgaccttataagttcatttaattttaaccatttgata-tttttttcaaaaatagaactgttggatca 77060  T
Q  206 tataagactgttgtatcttacgatgaactatcaacgcctaa 246  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  77059 tataagtctgttgtatcttacgatgaactatcaacgcctaa 77019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 76977 - 76938
Alignment:
Q  288 atcaacacattcatactccttagtcaattttcatataacc 327  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  76977 atcaacacattcatactccttaatcaattttcatataacc 76938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 19622129 - 19622211
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgata 175  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  19622129 aacatcaaatgtttaaggtgaactatgtttaaaggtggtccaccgtagaccttataggttcatttaattttaatcatttgata 19622211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 17350094 - 17350013
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||  ||||| ||| ||  ||||||||||||||||||||    
T  17350094 aacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaatt-ttttaattttaaccatttgat 17350013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 39133141 - 39133222
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||  ||||| ||| ||  ||||||||||||||||||||    
T  39133141 aacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaatt-ttttaattttaaccatttgat 39133222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 19622231 - 19622281
Alignment:
Q  196 cgttggatcatataagactgttgtatcttacgatgaactatcaacgcctaa 246  Q
    |||||||||||||| | ||||| |||||||||||||||||||||| |||||    
T  19622231 cgttggatcatataggtctgttatatcttacgatgaactatcaacacctaa 19622281  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 25583265 - 25583319
Alignment:
Q  121 ttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgata 175  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||  |||||||    
T  25583265 ttaaaggtgctccaccataggccttataaattcatttaattttaactttttgata 25583319  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 11219567 - 11219635
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    ||||||||||||| |||||||||||| ||||||||| | ||| |  |  ||||||||||||||||||||    
T  11219567 taaggtgaaccatatttaaaggtggttcaccatagatcgtattaaattttttaattttaaccatttgat 11219635  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 32979225 - 32979293
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||||||| || |||||||||||| ||||||||||| ||| |  |  ||||||||||||||||||||    
T  32979225 taaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgat 32979293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 19622329 - 19622368
Alignment:
Q  288 atcaacacattcatactccttagtcaattttcatataacc 327  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  19622329 atcatcacattcatactccttagtcaatcttcatataacc 19622368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 21128056 - 21128131
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||| ||||   ||| |||||||||||||||||||||| ||  |  |||||||||||||||||||||    
T  21128056 aatgtctaaggtggaccaacattataggtggtccaccatagaccttacaaagttttttaattttaaccatttgata 21128131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 7483517 - 7483436
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| ||| | ||||||||||||| || ||| |||| ||||||||  |||||| | ||  ||||||||||||||||||||    
T  7483517 aacatcaaatatctaaggtgaaccatattaaaaagtggcccaccatatgccttattaatttttttaattttaaccatttgat 7483436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 35174178 - 35174141
Alignment:
Q  293 cacattcatactccttagtcaattttcatataacctag 330  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  35174178 cacattcatactccttagttaatcttcatataacctag 35174141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 20314716 - 20314672
Alignment:
Q  130 gtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||||||||||||||| | || ||||||||| |||||||||||    
T  20314716 gtccaccatagaccttattaatttatttaatttaaaccatttgat 20314672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 49141488 - 49141414
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaacc 167  Q
    |||||| ||||| ||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||    
T  49141488 aacatcaaatgtctaaggtgaaccatatttaaagttgttccaccatagaccttataaattcatttaattttaacc 49141414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 9633899 - 9633953
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9633899 aacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttat 9633953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 52742968 - 52742917
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacct 144  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  52742968 aacatcaaatgtttaaggtgaaccatgtttaaaggtggtacaccatagacct 52742917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 44977345 - 44977399
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||| || |||||||    
T  44977345 aacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccgtaaaccttat 44977399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 50678500 - 50678567
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgat 174  Q
    ||||||||||||| |||||||||||| ||||||||||| || ||| ||  ||||||||||||||||||||    
T  50678500 taaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt--tttaattttaaccatttgat 50678567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 21277125 - 21277172
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  21277125 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttat 21277172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 51726829 - 51726782
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  51726829 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttat 51726782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 8092735 - 8092776
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||||||||||  |||| |||||||||||||||||||||||    
T  8092735 taaggtgaaccaactttataggtggtccaccatagaccttat 8092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 22766795 - 22766731
Alignment:
Q  110 gtgaaccatgtttaaaggtggtccaccatagacctt-ataagttcatttaattttaaccatttgat 174  Q
    ||||||||| ||||||||||||||||||| |||||| |||| ||  ||||||||||||| ||||||    
T  22766795 gtgaaccatatttaaaggtggtccaccatggaccttcataaatt-ttttaattttaaccttttgat 22766731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 26056139 - 26056058
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| || || ||| ||||||||| |||||||||||| |||||||| || ||| |  |  ||||||||||||||||||||    
T  26056139 aacatcaaaagtctaaagtgaaccatatttaaaggtggttcaccataggccgtattaaattttttaattttaaccatttgat 26056058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 40811401 - 40811458
Alignment:
Q  118 tgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgata 175  Q
    |||||| ||||||||||||||||||||||| |  || |||| |||||||| |||||||    
T  40811401 tgtttataggtggtccaccatagaccttattaaatcttttatttttaaccgtttgata 40811458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 51218958 - 51218877
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| ||| ||||||||| ||||||| ||||||||||||  |||||| |  |  ||||||||||| ||||||||    
T  51218958 aacatcaaatgtctaaagtgaaccatatttaaagatggtccaccatatgccttattaaattttttaattttaatcatttgat 51218877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 23082101 - 23082065
Alignment:
Q  110 gtgaaccatgtttaaaggtggtccaccatagacctta 146  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  23082101 gtgaaccatatttaaaggtggtccaccatggacctta 23082065  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 44103288 - 44103206
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||  ||||| ||| ||  ||||||||||||||||||||    
T  44103288 aacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatatgccttattaattttttttaattttaaccatttgat 44103206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 13513544 - 13513625
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| |||||||||| |||||||| |||||| ||||||||||||| ||||||| | ||  ||||||||||||||||||||    
T  13513544 aacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaaccatttgat 13513625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 13603077 - 13603158
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| |||||||||| |||||||| |||||| ||||||||||||| ||||||| | ||  ||||||||||||||||||||    
T  13603077 aacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaaccatttgat 13603158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 21961947 - 21962028
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||  ||||| ||| ||  ||||||||||||||||||||    
T  21961947 aacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaatt-ttttaattttaaccatttgat 21962028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 36938805 - 36938886
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgata 175  Q
    |||||| ||| | ||| ||||||||| |||||||||||| ||||||| || |||||| ||||||||||||||||| |||||||    
T  36938805 aacatcaaatatctaaagtgaaccatatttaaaggtggttcaccatacac-ttataaattcatttaattttaaccctttgata 36938886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 117172 - 117225
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta 146  Q
    |||||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  117172 aacatcaaatgtctaaggtgagtcatgtttaaaggtggtccaccatagacctta 117225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 39546669 - 39546616
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta 146  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||| |||||||    
T  39546669 aacatcaaatgtttaagatgaaccatgtttaaaggtggtccaccatggacctta 39546616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 7486201 - 7486255
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| ||| |||||||||||||||| || ||||||||||||||||||    
T  7486201 aacatcaaatgtctaaagtgaaccatgtttaaatgttgtccaccatagaccttat 7486255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 37276235 - 37276154
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| || || ||||||||||||| |||||||||||| ||| ||||||| ||| |  |  ||||||||||||||||||||    
T  37276235 aacatcaaaagtctaaggtgaaccatatttaaaggtggttcactatagaccatattaaattttttaattttaaccatttgat 37276154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 24069431 - 24069356
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||| ||||   ||| |||||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  24069431 aatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagtt-ttttaattttaaccatttgata 24069356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 10052235 - 10052282
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| |||| |||||||| |||||||||||||||||||| |||||||    
T  10052235 aatgtctaagatgaaccatatttaaaggtggtccaccataaaccttat 10052282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 13367035 - 13366988
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  13367035 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttat 13366988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 21670188 - 21670267
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttg 172  Q
    |||||| ||| | ||||||||||||| || ||| |||||||||||||  |||||| | ||  ||||||||||||||||||    
T  21670188 aacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaatttttttaattttaaccatttg 21670267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 36070309 - 36070356
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  36070309 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttat 36070356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 38789192 - 38789238
Alignment:
Q  121 ttaaaggtggtccaccatagaccttataagttcatttaattttaacc 167  Q
    |||||||||||||| ||||||| |||||| |||||||||||| ||||    
T  38789192 ttaaaggtggtccatcatagactttataaattcatttaatttaaacc 38789238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 44606270 - 44606344
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    ||||| ||||||||||||  |||| ||||||||||||||||||||| | |  || |||| |||||||| ||||||    
T  44606270 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttgttaaatcttttatttttaaccgtttgat 44606344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 7770883 - 7770808
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||| ||||   ||| ||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  7770883 aatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttt-tttaattttaaccatttgata 7770808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 7796793 - 7796718
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||| ||||   ||| ||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  7796793 aatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttt-tttaattttaaccatttgata 7796718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 7816074 - 7815999
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||| ||||   ||| ||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  7816074 aatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttt-tttaattttaaccatttgata 7815999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 34617180 - 34617105
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgata 175  Q
    ||||||||||||| ||||   ||| |||||||||||| ||||||||| ||| ||  |||||||||||||||||||||    
T  34617180 aatgtataaggtggaccaacattacaggtggtccaccgtagaccttactaaatt-ttttaattttaaccatttgata 34617105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 14109063 - 14109009
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14109063 aacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttat 14109009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 14419020 - 14418966
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14419020 aacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttat 14418966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 26406256 - 26406331
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||||||||  |||  |||||||||||||||||  |||||| ||||||||||||||||| |||||||    
T  26406256 aatgtctaaggtgaaccaactttgtaggtggtccaccatagatattataaattcatttaattttaaccctttgata 26406331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 4167575 - 4167629
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||    
T  4167575 aacatcaaatttctaaggtgaaccatgtttaaaggtggtccaccatagatcttat 4167629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 24495043 - 24494962
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| ||| ||||||||| |||||| |||||||||||||  |||||| | ||  ||||||||||||||||||||    
T  24495043 aacatcaaatgtctaaagtgaaccatatttaaaagtggtccaccatatgccttattaatttttttaattttaaccatttgat 24494962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 38406142 - 38406195
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| ||||||||||||| ||||||||| ||||| ||||||||||||    
T  38406142 aacatcaaatgtctaaggtgaaccatatttaaaggtagtcca-catagaccttat 38406195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 7983687 - 7983633
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  7983687 aacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagatcttat 7983633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 28109854 - 28109779
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||||||||  |||  |||||||||||||| || ||||||| ||||||||||||||||| |||||||    
T  28109854 aatgtctaaggtgaaccaactttgtaggtggtccaccatggatcttataaattcatttaattttaaccctttgata 28109779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 29424604 - 29424550
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  29424604 aacatcaaatgtctaagatgaaccatgtttaaaggtggtccatcatagaccttat 29424550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 14714616 - 14714697
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||  |||||| | ||  |||||||  |||||||||||    
T  14714616 aacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatacgccttattaatttttttaattgcaaccatttgat 14714697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 26205137 - 26205218
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| |||||||||||||  ||||| |||||||||||||  |||||| | ||  || |||||||||||||||||    
T  26205137 aacatcaaatgtctaaggtgaaccatacttaaaagtggtccaccatatgccttattaattttttaaattttaaccatttgat 26205218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 3528244 - 3528176
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    ||||||||||||| |||||||||||| ||||||||||| ||| |  |  |||||||||||||| |||||    
T  3528244 taaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgat 3528176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 12853023 - 12853091
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    ||||||||||||| |||||||||||| ||||||||||| ||| |  |  || |||||||||||||||||    
T  12853023 taaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttgaattttaaccatttgat 12853091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 3532325 - 3532364
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccata 139  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  3532325 aatgtttaaggtgaaccatatttaaaggtggtccaccata 3532364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 25570855 - 25570808
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  25570855 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttat 25570808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 45047473 - 45047511
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccat 138  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  45047473 aatgtctaaggtgaaccatatttaaaggtggtccaccat 45047511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 4512230 - 4512311
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| ||| | ||||||||||||| || ||| |||||||||||||  |||||| | ||  ||||||||| ||||||||||    
T  4512230 aacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaatttttttaattttgaccatttgat 4512311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 38370420 - 38370489
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgata 175  Q
    ||||||||||||  |||  ||||||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  38370420 taaggtgaaccaactttgtaggtggtccaccatagatcttataaattcatttaattttaaccctttgata 38370489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 41401682 - 41401561
Alignment:
Q  124 aaggtggtccaccatagaccttataagttcatttaattttaaccatttgatannnnnnnncnnnnnnngatccgttggatcatataagactgttgtatct 223  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||        |       || ||||| |||||||||||  ||||||||||    
T  41401682 aaggtggtccaccataaaccttataaattcatttaattttaaccattcgata-tttttttcaaaaagagaaccgtttgatcatataagtatgttgtatct 41401584  T
Q  224 tacgatgaactatcaacgcctaa 246  Q
    ||||||||||||||||| |||||    
T  41401583 tacgatgaactatcaacacctaa 41401561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 87015 - 87066
Alignment:
Q  195 ccgttggatcatataagactgttgtatcttacgatgaactatcaacgcctaa 246  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  87015 ccgttggatcatttaagtctgttgtatcttacgataaactatcaacgcctaa 87066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 87107 - 87146
Alignment:
Q  288 atcaacacattcatactccttagtcaattttcatataacc 327  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  87107 atcaacacattcatactccttagtcaattttcatataacc 87146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 41401512 - 41401473
Alignment:
Q  288 atcaacacattcatactccttagtcaattttcatataacc 327  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41401512 atcaacacattcatactccttagtcaattttcatataacc 41401473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 26393112 - 26393037
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||||||||   ||| |||||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  26393112 aatgtctaaggtgaaccaacattataggtggtccaccatagaccttactaagtt-ttttaattttaaccatttgata 26393037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 86927 - 86970
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccacc 136  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  86927 aacatcaaatgtctaaggtgaaccatgtttaaaggtggtccacc 86970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 35787920 - 35787974
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| |||||| || ||||||||||||||||||||||||||| ||||    
T  35787920 aacatcaaatgtctaaggtaaatcatgtttaaaggtggtccaccatagactttat 35787974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 39592281 - 39592227
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| |||||||| |||||||||||||||||||| |||| |||||||    
T  39592281 aacatcaaatgtctaaggtgagccatgtttaaaggtggtccatcatataccttat 39592227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 44302857 - 44302925
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||||||| || |||||||||||| ||||||||||| ||| |  |  ||||||||||||||||||||    
T  44302857 taaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgat 44302925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 87202 - 87234
Alignment:
Q  407 ctctctaccatatattttacttcccttcatctc 439  Q
    ||||||||||||||||| |||||||||||||||    
T  87202 ctctctaccatatatttcacttcccttcatctc 87234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 439
Target Start/End: Complemental strand, 41401397 - 41401365
Alignment:
Q  407 ctctctaccatatattttacttcccttcatctc 439  Q
    ||||||||||||||||| |||||||||||||||    
T  41401397 ctctctaccatatatttcacttcccttcatctc 41401365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 47668589 - 47668537
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacctt 145  Q
    |||||| ||| | |||||| ||||||| |||||| ||||||||||||||||||    
T  47668589 aacatcaaatatctaaggtaaaccatggttaaagatggtccaccatagacctt 47668537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 56000418 - 56000493
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||| ||||   ||| |||||||||||| ||||||||| ||||||  |||||||||||||||||||||    
T  56000418 aatgtctaaggtggaccaacattataggtggtccaccgtagaccttactaagttt-tttaattttaaccatttgata 56000493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 207790 - 207709
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgat 174  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||  ||||| ||| ||  ||||||||||||||||||||    
T  207790 aacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaatt-ttttaattttaaccatttgat 207709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 7426765 - 7426819
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  7426765 aacatcaaatgtctaaggtgaatcatatttaaaggtggtccaccatagaccttat 7426819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 32734448 - 32734490
Alignment:
Q  288 atcaacacattcatactccttagtcaattttcatataacctag 330  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||    
T  32734448 atcatcacattcatactccttaatcaatcttcatataacctag 32734490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 15856664 - 15856739
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagacctta-taagttcatttaattttaaccatttgata 175  Q
    ||||| ||||||| ||||   ||| |||||||||||||||||||||| ||||||  ||||||||||| |||||||||    
T  15856664 aatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagtt-ttttaattttaatcatttgata 15856739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 18693835 - 18693903
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    ||||||||||||| | |||||||||| ||||||||||| ||| |  |  ||||||||||| ||||||||    
T  18693835 taaggtgaaccatatataaaggtggttcaccatagaccgtattaaattttttaattttaatcatttgat 18693903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 21387774 - 21387842
Alignment:
Q  106 taaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    ||||||||| ||| |||||||||||| |||||||| || ||| |  |  ||||||||||||||||||||    
T  21387774 taaggtgaaacatatttaaaggtggttcaccataggccgtattaaattttttaattttaaccatttgat 21387842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 41032 - 41078
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccata 139  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  41032 aacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccata 41078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 18139479 - 18139425
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    |||||| ||||| ||||||||||||||||||||| || |||||||||||| ||||    
T  18139479 aacatcaaatgtctaaggtgaaccatgtttaaagatgatccaccatagacattat 18139425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 293625 - 293578
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  293625 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttat 293578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 14328759 - 14328712
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  14328759 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttat 14328712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 14421769 - 14421722
Alignment:
Q  100 aatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttat 147  Q
    ||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  14421769 aatgtctaaggtgaaccaactttataggtggtccaccatagaccttat 14421722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 13507163 - 13507121
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccac 135  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||    
T  13507163 aacatcaaatgtttaaggtgaaccatatttaaaggtggtccac 13507121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 13196 - 13150
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccata 139  Q
    |||||| ||||| ||||||||||||| ||||||| ||||||||||||    
T  13196 aacatcaaatgtctaaggtgaaccatatttaaagatggtccaccata 13150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 39893 - 39812
Alignment:
Q  93 aacatccaatgtataaggtgaaccatgtttaaaggtggtccaccatagaccttataagttcatttaattttaaccatttgat 174  Q
    |||||| || || ||||||||| ||| |||||||||||| |||||| |||| ||| |  |  ||||||||||||||||||||    
T  39893 aacatcaaaagtctaaggtgaatcatatttaaaggtggttcaccatggaccgtattaaattttttaattttaaccatttgat 39812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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