View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6134_high_11 (Length: 242)
Name: NF6134_high_11
Description: NF6134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6134_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 25550227 - 25550007
Alignment:
| Q |
13 |
tggtacacattaaagtttataaacaat-gcttgctactttttgggtcgacgtggga--------aagcctcttttctagcttctttgagatttatggaaa |
103 |
Q |
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| T |
25550227 |
tggtacacattaaagtttataaacaatagcttgccactttttgggtcgacgtgggactattttaaagcctcttttcta-cttctttgagatttatggaaa |
25550129 |
T |
|
| Q |
104 |
aataataccattaccaaagtcagatgctgcctaaaagttcaaaagggcagtgctattcagcacgaagcaaacatttctgacaccatcgcatatgaacttc |
203 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
25550128 |
a-tgataccattaccaaagtcagatgctgcctaaaagttcaaa-gggcagtgctattcatcacgaagcaaacatttctgacaccatcgcaaatgaacttc |
25550031 |
T |
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| Q |
204 |
agctgttgggagtcgtgatgcttt |
227 |
Q |
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| T |
25550030 |
agctgttgggagtcgttatgcttt |
25550007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 26090863 - 26090669
Alignment:
| Q |
40 |
gcttgctactttttgggtcgacgtggga--------aagcctcttttctagcttctttgagatttatggaaaaataataccattaccaaagtcagatgct |
131 |
Q |
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| T |
26090863 |
gcttgctacttgttgggtcgacgtgggactattttaaagcctcttttctagcttctttgagatttatggaaaaataataccattaccaaagtcagatgct |
26090764 |
T |
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| Q |
132 |
gcctaaaagttcaaaagggcagtgctattcagcacgaagcaaacatttctgacaccatcgcatatgaacttcagctgttgggagtcgtgatgcttt |
227 |
Q |
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| T |
26090763 |
gcctaaaagttc-aaagggcagtgctattcatcatgaagcaaacatttctgacaccatcgcaaatgaacttcagctgttgggagtcgtgatgcttt |
26090669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26051274 - 26051046
Alignment:
| Q |
1 |
aagtaacagatttggtacacattaaagtttataaacaatgc-ttgctactttttgggtcgacgtggga--------aagcctcttttctagcttctttga |
91 |
Q |
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|||||||| || |||||||||| |||||||||||||||| | || ||||||| ||||||||||||| || |||| |||||||||||||||| |
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| T |
26051274 |
aagtaacatatatggtacacatcaaagtttataaacaataccttattacttttctggtcgacgtgggactattttaaatcctcatttctagcttctttga |
26051175 |
T |
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| Q |
92 |
gatttatggaaaaataataccattaccaaagtcagatgctgcctaaaagttcaaaagggcagtgctattcagcacgaagcaaacatttctgacaccatcg |
191 |
Q |
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| T |
26051174 |
gatttagggaaaa-tgataccattaccgaagtcatatgctgcctaaaagttcaaa---gcagtgctattcattgcgaagcaaacgttcccgaaaccatcg |
26051079 |
T |
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| Q |
192 |
catatgaacttcagctgttgggagtcgtgatgc |
224 |
Q |
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| T |
26051078 |
caaatgaacttcagctgttaggagtcgtgatgc |
26051046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26072443 - 26072215
Alignment:
| Q |
1 |
aagtaacagatttggtacacattaaagtttataaacaatgc-ttgctactttttgggtcgacgtggga--------aagcctcttttctagcttctttga |
91 |
Q |
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|||||||| || |||||||||| |||||||||||||||| | || ||||||| ||||||||||||| || |||| |||||||||||||||| |
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| T |
26072443 |
aagtaacatatatggtacacatcaaagtttataaacaataccttattacttttctggtcgacgtgggactattttaaatcctcatttctagcttctttga |
26072344 |
T |
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| Q |
92 |
gatttatggaaaaataataccattaccaaagtcagatgctgcctaaaagttcaaaagggcagtgctattcagcacgaagcaaacatttctgacaccatcg |
191 |
Q |
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|||||| |||||| | ||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||| || | || ||||||| |
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| T |
26072343 |
gatttagggaaaa-tgataccattaccgaagtcatatgctgcctaaaagttcaaa---gcagtgctattcattgcgaagcaaacgttcccgaaaccatcg |
26072248 |
T |
|
| Q |
192 |
catatgaacttcagctgttgggagtcgtgatgc |
224 |
Q |
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|| |||||||||||||||| ||||||||||||| |
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| T |
26072247 |
caaatgaacttcagctgttaggagtcgtgatgc |
26072215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 25519655 - 25519582
Alignment:
| Q |
151 |
cagtgctattcagcacgaagcaaacatttctgacaccatcgcatatgaacttcagctgttgggagtcgtgatgc |
224 |
Q |
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| T |
25519655 |
cagtgctattcattgcgaagcaaacgttcccgaaatcatcgcaaatgaacttcagctgttaggagtcgtgatgc |
25519582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 26052564 - 26052509
Alignment:
| Q |
13 |
tggtacacattaaagtttataaaca--atgcttgctactttttgggtcgacgtggga |
67 |
Q |
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| T |
26052564 |
tggtacacattaaagtttataaataccat-cttactactttttgggtcgacgtggga |
26052509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 26072617 - 26072562
Alignment:
| Q |
13 |
tggtacacattaaagtttataaaca--atgcttgctactttttgggtcgacgtggga |
67 |
Q |
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||||||||||||||||||||||| | || ||| ||||||||||||||||||||||| |
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| T |
26072617 |
tggtacacattaaagtttataaataccat-cttactactttttgggtcgacgtggga |
26072562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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