View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6134_high_3 (Length: 462)
Name: NF6134_high_3
Description: NF6134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6134_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 49427940 - 49427512
Alignment:
| Q |
19 |
ttcaaacaaagacgacaaagcttcatatatttatacggcatcgttaattgatctaaatattggatgatgtattttgctttgtgtacttgtctctttcgtt |
118 |
Q |
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| T |
49427940 |
ttcaaacaaagacgacaaagcttcatatatttatacggcatcgttaattgatctaaatattggatgatgtattttgctttgtgtacttgtctctttcgtt |
49427841 |
T |
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| Q |
119 |
ggtttggaattatcacttcaacaataatcagtttcctttgtggtctaatgttaatgttagtatgttgtatgttatgtagaaaattcaagttctcttacgc |
218 |
Q |
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| T |
49427840 |
ggtttggaattatcacttcaacaataatcagtttcctttgtggtctaatgttaatgttagtatgttgtatgttatgtagaaaattcaagttctcttacgc |
49427741 |
T |
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| Q |
219 |
tagaagaaattaatgtcatcaaccggggatgatcgtccttatgtgatcagcgatttaccagaccgtgtcatctgtcatattatctcttttctcccaaccg |
318 |
Q |
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| T |
49427740 |
tagaagaaat----gtcatcaaccggggatgatcgtcgtgatgtgatcagcgatttaccagaccgtgtcatctgtcatattatctcttttctcccaaccg |
49427645 |
T |
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| Q |
319 |
aacaggcggttgccactagtgtcctttcgaagagatggacgcatctctggctctctgtccccactctcagattggatgtggacttgaaacaccgagaagc |
418 |
Q |
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| T |
49427644 |
aacaggcggttgccactagtgtcctttcgaagagatggacgcatctctggctctctgtccccactctcagattggatgtggacttgaaacaccgagaagc |
49427545 |
T |
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| Q |
419 |
ccttttttgctttaatgagttcgtctactctgt |
451 |
Q |
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| T |
49427544 |
ccttttttgctttaatgagttcgtctactctgt |
49427512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 49446576 - 49446505
Alignment:
| Q |
286 |
tcatctgtcatattatctcttttctcccaaccgaacaggcggttgccactagtgtcctttcgaagagatgga |
357 |
Q |
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| T |
49446576 |
tcatctgtcatattctctcttttctccctaccaaacaagctgttgccactagtgtccttgcaaagaggtgga |
49446505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 49439080 - 49439011
Alignment:
| Q |
294 |
catattatctcttttctcccaaccgaacaggcggttgccactagtgtcctttcgaagagatggacgcatc |
363 |
Q |
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| T |
49439080 |
catattctctcttttctcccaaccaaacaggttgttgccactagcgtcctatccaagagatggaagcatc |
49439011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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