View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6134_low_4 (Length: 435)

Name: NF6134_low_4
Description: NF6134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6134_low_4
NF6134_low_4
[»] chr7 (18 HSPs)
chr7 (259-416)||(21772760-21772917)
chr7 (259-416)||(21726640-21726798)
chr7 (1-141)||(21786074-21786214)
chr7 (1-145)||(21714749-21714893)
chr7 (51-145)||(21772551-21772645)
chr7 (262-416)||(21727153-21727305)
chr7 (316-416)||(21716679-21716779)
chr7 (49-145)||(21726432-21726528)
chr7 (259-321)||(21715006-21715068)
chr7 (1-131)||(21788792-21788922)
chr7 (260-416)||(21682566-21682725)
chr7 (18-130)||(21705193-21705305)
chr7 (74-145)||(21682241-21682312)
chr7 (43-117)||(15714231-15714305)
chr7 (371-416)||(21786435-21786480)
chr7 (23-136)||(21664683-21664796)
chr7 (48-131)||(21652770-21652853)
chr7 (48-115)||(21764636-21764703)
[»] chr3 (1 HSPs)
chr3 (284-326)||(53472883-53472925)
[»] chr2 (1 HSPs)
chr2 (281-315)||(34486603-34486637)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 259 - 416
Target Start/End: Original strand, 21772760 - 21772917
Alignment:
Q  259 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttactgc 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21772760 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttagtgc 21772859  T
Q  359 acatattagtattttccatattttaattacaaagtggagatggtgattagagaggggt 416  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21772860 acatgttagtattttccatattttaattacaaagtggagatagtgattagagaggggt 21772917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 259 - 416
Target Start/End: Original strand, 21726640 - 21726798
Alignment:
Q  259 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttactgc 358  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21726640 gtattagttaaagtttaactattattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttagtgc 21726739  T
Q  359 acatattagtattttccatattttaattacaaagtgga-gatggtgattagagaggggt 416  Q
    |||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  21726740 acatgttagtatttttcatattttaattacaaagtggaggatagtgattagagaggggt 21726798  T

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Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 21786074 - 21786214
Alignment:
Q  1 tggttccaaaaagaaaaggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatag 100  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  21786074 tggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatat 21786173  T
Q  101 catcctcattacatctacaaccaaggtacaacaaaaatatt 141  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  21786174 catcctcattacatctacaaccaaggtacaacagaaatatt 21786214  T

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Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 21714749 - 21714893
Alignment:
Q  1 tggttccaaaaagaaaaggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatag 100  Q
    |||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||     
T  21714749 tggttccaaaaagaaaagcagaaagagagcatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcaacgtaatat 21714848  T
Q  101 catcctcattacatctacaaccaaggtacaacaaaaatattagag 145  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  21714849 catcctcattacatctacaaccaaggtacaacagaaatattagag 21714893  T

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Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 21772551 - 21772645
Alignment:
Q  51 gagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaacaaaaatattagag 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21772551 gagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaataccatcctcattacatctacaaccaaggtacaacaaaaatattagag 21772645  T

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Target: chr7; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 262 - 416
Target Start/End: Original strand, 21727153 - 21727305
Alignment:
Q  262 ttagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataatttctatttttggtatattatgaacatgtgcccttactgcaca 361  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||||||||||||||  |   |||| | |||||||  | |||    
T  21727153 ttagtttaagtttacgtatcattaattttcaactttttgagaaataaattggcataatttctatttttggtattct---aacacgcgcccttagcgtaca 21727249  T
Q  362 tattagtattttccatattttaattacaaagtgga-gatggtgattagagaggggt 416  Q
    | |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  21727250 tgttagtatttttcatattttaattacaaagtggaggatagtgattagagaggggt 21727305  T

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Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 316 - 416
Target Start/End: Original strand, 21716679 - 21716779
Alignment:
Q  316 taatttctatttttggtatattatgaacatgtgcccttactgcacatattagtattttccatattttaattacaaagtggagatggtgattagagagggg 415  Q
    |||||| ||| |||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  21716679 taatttttatatttggtatattatgaacatgtgcccttagtgcgcatgttattattttccatattttaattacaaagtggagatagtgattagagagggg 21716778  T
Q  416 t 416  Q
    |    
T  21716779 t 21716779  T

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Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 21726432 - 21726528
Alignment:
Q  49 atgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaacaaaaatattagag 145  Q
    ||||||| |||||| |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  21726432 atgagtcccagtcaaagacaccctttcatcttcttgatcgtcggcgtaatatcatcctcattacatctacaaccaaggtacaacagaaatattagag 21726528  T

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Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 21715006 - 21715068
Alignment:
Q  259 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataattt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21715006 gtattagttaaagtttaactatcattaattttcaactttttgagaaataaactgacataattt 21715068  T

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Target: chr7; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 21788792 - 21788922
Alignment:
Q  1 tggttccaaaaagaaaaggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatag 100  Q
    ||||||||||| |||| ||| ||||||| |||||| ||||||||   |||||||| |||| ||||||||||  |||||||||||||||||||||||| |     
T  21788792 tggttccaaaaggaaagggagaaggagaacatagtgtatcaataacaaatgagtcccagttagagacacccactcatcttcttgatcttcagcgtaaaat 21788891  T
Q  101 catcctcattacatctacaaccaaggtacaa 131  Q
    |||||||| ||||||||   |||||||||||    
T  21788892 catcctcactacatctaattccaaggtacaa 21788922  T

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Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 416
Target Start/End: Original strand, 21682566 - 21682725
Alignment:
Q  260 tattagttaaagtttaactatcattaattttcaactttttgaga-----aataaactgacataatttctatttttggtatattatgaacatgtgccctta 354  Q
    |||||||| ||||||| |||| |||||||||||||||||||| |     || |||||| |||| |||||| |||||||||| ||   || |||| |||||    
T  21682566 tattagtttaagtttacctataattaattttcaactttttgaaagaaaaaaaaaactggcatactttctacttttggtatacta---acctgtggcctta 21682662  T
Q  355 ctgcacatattagtattttccatattttaattacaaagtgga-gatggtgattagagaggggt 416  Q
     ||||||| ||| ||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  21682663 atgcacatgttactatcttccatattttaattacaaagtggaggatagggattagagaggggt 21682725  T

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Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 21705193 - 21705305
Alignment:
Q  18 ggaaaaggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatcta 117  Q
    ||||| ||||| |||||| |||||||||  ||||||||||||||||| ||||||   ||||||||||||||||| ||||| | ||||||||  |||||||    
T  21705193 ggaaatggagaacatagtgtatcaataccaaatgagtcacagtcagaaacacccacacatcttcttgatcttcaacgtaaaatcatcctcaccacatcta 21705292  T
Q  118 caaccaaggtaca 130  Q
       ||||||||||    
T  21705293 attccaaggtaca 21705305  T

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Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 21682241 - 21682312
Alignment:
Q  74 tcatcttcttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaacaaaaatattagag 145  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| || | |||| ||||||    
T  21682241 tcatcttcttgatcttcagcgtaatatcatcctcattaaatctacacccaaggtataatagaaatcttagag 21682312  T

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Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 15714231 - 15714305
Alignment:
Q  43 tacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatcta 117  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||| ||||||||    ||||||||||||||||    
T  15714231 tacgaaatgagtcacagtcagagacacccactcatcttcttgatctacagcgtaaatatatcctcattacatcta 15714305  T

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Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 21786435 - 21786480
Alignment:
Q  371 tttccatattttaattacaaagtggagatggtgattagagaggggt 416  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  21786435 tttccatattttaattacaaagtggagatagtgattagagaggggt 21786480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 21664683 - 21664796
Alignment:
Q  23 aggagagcatagtttatcaatacgtaatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatctacaacc 122  Q
    |||||| |||| | |||||||||  ||||||||||||   |||||||||  ||||||||||||||||| |||||| | || |||||||  ||||| | ||    
T  21664683 aggagaacatattgtatcaatactaaatgagtcacagctggagacacccactcatcttcttgatcttctgcgtaaaatcaccctcattggatctaaaccc 21664782  T
Q  123 aaggtacaacaaaa 136  Q
    ||||||||| ||||    
T  21664783 aaggtacaataaaa 21664796  T

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Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 21652770 - 21652853
Alignment:
Q  48 aatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatctacaaccaaggtacaa 131  Q
    ||||||||||||||| ||||||||  ||||||||||||||||| || ||| | |||||| | ||||||||   |||||||||||    
T  21652770 aatgagtcacagtcaaagacacccactcatcttcttgatcttctgcataaaatcatcctaactacatctaattccaaggtacaa 21652853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 21764636 - 21764703
Alignment:
Q  48 aatgagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaatagcatcctcattacatc 115  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||| |||   |||||||| ||||||    
T  21764636 aatgagtcacagtcagagacacccactcatcttctagatcttcagcataaagtcatcctcactacatc 21764703  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 53472883 - 53472925
Alignment:
Q  284 taattttcaactttttgagaaataaactgacataatttctatt 326  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  53472883 taattttcaactttttgagaaataaattgacataatttttatt 53472925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 34486637 - 34486603
Alignment:
Q  281 cattaattttcaactttttgagaaataaactgaca 315  Q
    ||||||||||||||||||||||||||||| |||||    
T  34486637 cattaattttcaactttttgagaaataaattgaca 34486603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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