View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6134_low_5 (Length: 303)
Name: NF6134_low_5
Description: NF6134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6134_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 24876140 - 24876414
Alignment:
| Q |
12 |
atcatcattcataggaaagagaccttctttcttcataaaaatgcttacttagctcccatgtgcctctttcttgcccaagagaccagcttgtaccatctca |
111 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876140 |
atcatcattcatatgaaagagacattctttcttcataaaaatgcttacttagctcccatgtgcctctttcttgcccaagagaccagcttgtaccatctca |
24876239 |
T |
|
| Q |
112 |
actaaattagcctcaacttgaattcttaagttttcaccaagaaagttttaatgattaaattgtgtgattttataagagagtatagttctttgatctctat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876240 |
actaaattagcctcaacttgaattcttaagttttcaccaagaaagttttaatgattaaattgtgtgattttataagagagtatagttctttgatctctat |
24876339 |
T |
|
| Q |
212 |
atccacatagtctttgcagtaatannnnnnnnnnnnnaaatgataaatgttagtaagttaattgttacgttagtatt |
288 |
Q |
| |
|
||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24876340 |
atcaacatagtctttgcagtaata--tatttttttttaaatgacaaatgttagtaagttaattgttacgttagtatt |
24876414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 24040386 - 24040358
Alignment:
| Q |
255 |
taaatgttagtaagttaattgttacgtta |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24040386 |
taaatgttagtaagttaattgttacgtta |
24040358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University