View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6134_low_6 (Length: 295)
Name: NF6134_low_6
Description: NF6134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6134_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 38344237 - 38343968
Alignment:
| Q |
8 |
gacatcatcaacaaggtccattatagttgctttttccggctctgctggatgatctgaaagtccatagcctctaaaatcaaaggcaatagcacggtatcca |
107 |
Q |
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| T |
38344237 |
gacatcatcaacaaggtccattatagttgctttttccggctctgctggatgatctgaaagtccatagcctctaaaatcaaaggcaatagcacggtatcca |
38344138 |
T |
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| Q |
108 |
gcatctgcaacagcaatcatttggtatctccaagtataccatatttctgggaatccatgcaagaaaaccactaccttttcacctgcacaaataaaaaatg |
207 |
Q |
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| T |
38344137 |
gcatttgcaacagcaatcatttggtatctccaagtataccatatttctgggaatccatgcaagaaaaccactaccttttcacctgcacagataaaaaatg |
38344038 |
T |
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| Q |
208 |
ttgttgtacttcagagtttagaaacaaatcaaccaagaaaagtttatgatatgagggagttgataccagt |
277 |
Q |
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| T |
38344037 |
ttgttgtacttcagagtttagaaacaaatcaaccaagaaaagtttatgatatgatagagttgataccagt |
38343968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 38349320 - 38349134
Alignment:
| Q |
12 |
tcatcaacaaggtccattatagttgctttttccggctctgctggatgatctgaaagtccatagcctctaaaatcaaaggcaatagcacggtatccagcat |
111 |
Q |
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| T |
38349320 |
tcatcaacaaggtccattatggttgatttttctggttctgctggatgatcagagagtccatagcctctagaatcaaaggctatagcacggtatccagcat |
38349221 |
T |
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| Q |
112 |
ctgcaacagcaatcatttggtatctccaagtataccatatttctgggaatccatgcaagaaaaccactaccttttcacctgcacaaa |
198 |
Q |
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| T |
38349220 |
ttgcaacagcaatcatttggtatcgccatgtataccatatttctgggaatccatgtatgaaaaccactgctttttcacctacacaaa |
38349134 |
T |
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