View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6134_low_9 (Length: 264)
Name: NF6134_low_9
Description: NF6134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6134_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 45534302 - 45534066
Alignment:
| Q |
20 |
aaaggttaagaatttaagttgaaatgagaacatgtgaattataagagagttttatttctgcagaatggggaaaagtagaggtgcagagtgtgatagtgag |
119 |
Q |
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| T |
45534302 |
aaaggttaagaatttaagtagaaatgagaacatgtgaattataagagagttttgtttctgcagaatggggaaaagtagaggtgcagagtgtgatagtgag |
45534203 |
T |
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| Q |
120 |
gaactt--aggtggtggtggaatggggcatgaaggacaggatgatgaaagatagtgtaaaaatattactatgtttgacagagtataataagagtgtgtac |
217 |
Q |
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|||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
45534202 |
gaacttggaagtggtgttggaatggggcatgaaggacaggatgatgaaagatagtgtaaaaataatactatgtttgtcggagtataataagagtgtgtac |
45534103 |
T |
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| Q |
218 |
ttcatttgatctagtcgttaagtatagctttcctatg |
254 |
Q |
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| T |
45534102 |
tttatttgatctagtcgttaaatataactttcttatg |
45534066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 31694436 - 31694200
Alignment:
| Q |
20 |
aaaggttaagaatttaagttgaaatgagaacatgtgaattataagagagttttatttctgcagaatggggaaaagtagaggtgcagagtgtgatagtgag |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31694436 |
aaaggttaagaatttaagctgaaatgagaacatgtgaattataagagagttttgtttctgcagaatggggaagagtagaggtgcagagtgtgatagtgag |
31694337 |
T |
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| Q |
120 |
gaactt--aggtggtggtggaatggggcatgaaggacaggatgatgaaagatagtgtaaaaatattactatgtttgacagagtataataagagtgtgtac |
217 |
Q |
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|||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
31694336 |
gaacttggaggtggtggtggagtggggcatggaggacagaatgatgaaagatagtgtaaaaataatcctatgtttgacggagtataataagagtgtgtac |
31694237 |
T |
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| Q |
218 |
ttcatttgatctagtcgttaagtatagctttcctatg |
254 |
Q |
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||||||||||||| ||||||| | || |||||||||| |
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| T |
31694236 |
ttcatttgatctaatcgttaaatttaactttcctatg |
31694200 |
T |
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