View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6135_high_1 (Length: 884)
Name: NF6135_high_1
Description: NF6135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6135_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 115 - 868
Target Start/End: Complemental strand, 386882 - 386129
Alignment:
| Q |
115 |
tcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgttgaactatcggtttct |
214 |
Q |
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| T |
386882 |
tcgggtgcagaattgggaaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgctgaactatcggtttct |
386783 |
T |
|
| Q |
215 |
taaaccactccatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagactctaccgagcttaacatctgcgcaatcacaatctt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
386782 |
taaaccactccatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagactctaccgagcctaacatctgcacaatcacaatctt |
386683 |
T |
|
| Q |
315 |
taaagttggtcccgtcaccaatttaatccgtctcgggacaataccataatatagcatacgctttctgaacctatgaagagtgtgcaccgctgctataagg |
414 |
Q |
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| T |
386682 |
taaagttggtcccgtcaccaatttaatccgtcttgggacaataccataatatagcatacgctttctgaacctatgaagagtgtgcaccgctgctataagg |
386583 |
T |
|
| Q |
415 |
gtggctccaacggacaagtttctaacatcaagggaccaagcgatgtgctgatcgaaaactatagcctttgggaaaagtttattctcataagcaaccttcc |
514 |
Q |
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| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
386582 |
gcggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcgaaaactatagcctttgagaaaagtttattctcataagcaaccttcc |
386483 |
T |
|
| Q |
515 |
aaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataatcaat |
614 |
Q |
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| T |
386482 |
aaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataatcaat |
386383 |
T |
|
| Q |
615 |
actttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggccttatgctttgtt |
714 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386382 |
acttcgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggcctgtgaaaagtccacacataaacgagtgggccttatgctttgtt |
386283 |
T |
|
| Q |
715 |
gcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaacttttgcag |
814 |
Q |
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| T |
386282 |
gcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatgaaatcaacttttgcag |
386183 |
T |
|
| Q |
815 |
cggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattct |
868 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386182 |
cggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattct |
386129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 20 - 866
Target Start/End: Original strand, 38728566 - 38729411
Alignment:
| Q |
20 |
aagagtgtgcacctcaaacacctattagatattaagactgtgtttacattgcccttcccgcaattagaggtttaggaggtgatagagatctgatttcggg |
119 |
Q |
| |
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||||| || ||||||||| ||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |
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| T |
38728566 |
aagagcgtacacctcaaa-acctattagatattaagcctgtgtttacattgccctgcctgcaattagaggtttaggaggggatagagatctgatttcggg |
38728664 |
T |
|
| Q |
120 |
tgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgttgaactatcggtttcttaaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
38728665 |
tgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgctgaactattggtttcttaaac |
38728764 |
T |
|
| Q |
220 |
cactccatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagactctaccgagcttaacatctgcgcaatcacaatctttaaag |
319 |
Q |
| |
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|||||||||||||||||||| || || |||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38728765 |
cactccatgacagaatctcccggcgccctaagaaccactttacttacctcaaacggagactctactgagcttaacatctgcgcaatcacaatctttaaag |
38728864 |
T |
|
| Q |
320 |
ttggtcccgtcaccaatttaatccgtctcgggacaataccataatatagcatacgctttctgaacctatgaagagtgtgcaccgctgctataagggtggc |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
38728865 |
ttggtcccgtcaccaatttaatccgtctcgggacaatgccataatacagcatgcgctttctgaacctatgaagagtgtgcaccgcagctataagggcggc |
38728964 |
T |
|
| Q |
420 |
tccaacggacaagtttctaacatcaagggaccaagcgatgtgctgatcgaaaactatagcctttgggaaaagtttattctcataagcaaccttccaaaca |
519 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38728965 |
tccaacagacaagtttctaacatcaagggaccaagctatgtgctgatcgaaaactatagcctttgggaaaagtttattctcataagcaaccttccaaaca |
38729064 |
T |
|
| Q |
520 |
catcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataatcaatacttt |
619 |
Q |
| |
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|| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729065 |
caccgagctcgatttatctgtcccataagaactagataattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataatcaatacttt |
38729164 |
T |
|
| Q |
620 |
gaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggccttatgctttgttgcact |
719 |
Q |
| |
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|||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
38729165 |
gaaagaattctcttacaaatgtcaacaccggctgtcccctctgttcggggcctgtgaatagtccacacataaacgagtgcgccttatgctttgttgcact |
38729264 |
T |
|
| Q |
720 |
aaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaacttttgcagcggag |
819 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38729265 |
aaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagtatcaaatcaacttttgcagcggag |
38729364 |
T |
|
| Q |
820 |
ttaacatatgtttcaagaagtggcttggctgactcgtatatcccatt |
866 |
Q |
| |
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|| ||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38729365 |
ttcacatatgtttcaagaagaggcttggctgattcgtatatcccatt |
38729411 |
T |
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