View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6135_high_12 (Length: 301)

Name: NF6135_high_12
Description: NF6135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6135_high_12
NF6135_high_12
[»] chr4 (1 HSPs)
chr4 (19-301)||(53554774-53555055)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 53555055 - 53554774
Alignment:
Q  19 tctctaaatatatatttttataggtactaactctctaaacttgttagtattatcataattaatcgatagaaaatatctttttgaggccttggagtattcg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  53555055 tctctaaatatatatttttataggtactaactctctaaacttgttagtattatcataattaatcgatacaaaatatctttttgaggccttggagcattcg 53554956  T
Q  119 ggcttgattgtacaataatgtagctaagagaatataaaaatattaaacgtaaaagtcaaacatttgttacaatattgatcattaacnnnnnnnnctcttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  53554955 ggcttgattgtacaataatgtagctaagagaatataaaaatattaaacgtaaaagtcaaacatttgttacaatattgatcattaacttttttttctcttg 53554856  T
Q  219 caaggaattggttaggttattatcatcaaacaaaaaaccccccaattaatttatatttttaattttcttctttgttcctattt 301  Q
    ||||||||| |||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53554855 caaggaattagttgagttattatcatcaaac-aaaacccccccaattaatttatatttttaattttcttctttgttcctattt 53554774  T

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