View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6135_high_17 (Length: 236)
Name: NF6135_high_17
Description: NF6135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6135_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38293709 - 38293485
Alignment:
| Q |
1 |
atattcaattagtttttgatcttaactatatgattttcaaatgaaatggattctgttaatttgaagtctaaaattcagcttaagattgtttcattcaata |
100 |
Q |
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| T |
38293709 |
atattcaattagtttttgatcttaactatatgattttcaaatgaaatggattctgttaatttgaagtctaaaattcagcttaagattgtttcattcaata |
38293610 |
T |
|
| Q |
101 |
ttcaaacttgaatagtataatttatatatgtagtgaaaccaaagtatatgacaaaacaatgcaaatcaagt-nnnnnnngtaaataagtcatacgtgacg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
38293609 |
ttcaaacttgaatagtataatttatatatgtagtgaaaccaaagtatatgatgaaacaatgcaaatcaagtaaaaaaaagtaaataagtcatacgtgacg |
38293510 |
T |
|
| Q |
200 |
taaaaatgattacaagttcgtcatg |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
38293509 |
taaaaatgattacaagttcgtcatg |
38293485 |
T |
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