View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6135_high_4 (Length: 503)

Name: NF6135_high_4
Description: NF6135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6135_high_4
NF6135_high_4
[»] chr1 (25 HSPs)
chr1 (20-495)||(33489392-33489873)
chr1 (331-495)||(41972256-41972420)
chr1 (321-437)||(17445325-17445439)
chr1 (321-437)||(26144267-26144381)
chr1 (319-435)||(42310984-42311098)
chr1 (321-437)||(321418-321532)
chr1 (321-409)||(7433457-7433545)
chr1 (396-495)||(28463165-28463265)
chr1 (319-437)||(3828994-3829110)
chr1 (447-489)||(32379867-32379909)
chr1 (442-482)||(11843917-11843957)
chr1 (461-495)||(3829116-3829150)
chr1 (447-484)||(30054943-30054980)
chr1 (321-437)||(32982097-32982211)
chr1 (321-437)||(35907564-35907678)
chr1 (453-489)||(25017514-25017550)
chr1 (450-482)||(30559023-30559055)
chr1 (449-481)||(40864738-40864770)
chr1 (461-492)||(7433578-7433609)
chr1 (449-483)||(9637245-9637279)
chr1 (450-484)||(52753836-52753870)
chr1 (461-494)||(17445446-17445479)
chr1 (368-409)||(23313298-23313339)
chr1 (449-482)||(48606630-48606663)
chr1 (450-482)||(170468-170500)
[»] chr4 (48 HSPs)
chr4 (319-495)||(30109966-30110142)
chr4 (321-495)||(48129978-48130145)
chr4 (321-437)||(25930720-25930834)
chr4 (321-437)||(20129322-20129436)
chr4 (321-437)||(26439320-26439434)
chr4 (321-437)||(34407325-34407439)
chr4 (321-437)||(43143625-43143739)
chr4 (323-437)||(43355918-43356030)
chr4 (321-445)||(17511266-17511389)
chr4 (321-437)||(13012200-13012314)
chr4 (321-437)||(36382387-36382500)
chr4 (321-437)||(47500785-47500899)
chr4 (319-409)||(29996050-29996140)
chr4 (321-437)||(3292937-3293051)
chr4 (321-437)||(6690276-6690390)
chr4 (321-437)||(10352925-10353039)
chr4 (321-437)||(42333817-42333931)
chr4 (321-436)||(30216784-30216897)
chr4 (366-437)||(6235577-6235646)
chr4 (328-437)||(48989347-48989454)
chr4 (326-411)||(45194193-45194278)
chr4 (321-409)||(29319772-29319860)
chr4 (322-437)||(40529028-40529141)
chr4 (321-437)||(50205118-50205232)
chr4 (366-437)||(1817774-1817843)
chr4 (447-482)||(12211244-12211279)
chr4 (461-495)||(6235653-6235687)
chr4 (461-495)||(25930841-25930875)
chr4 (461-495)||(30216742-30216776)
chr4 (461-495)||(36382346-36382380)
chr4 (461-495)||(44156784-44156818)
chr4 (461-495)||(48989461-48989495)
chr4 (452-489)||(4325538-4325575)
chr4 (321-405)||(30077702-30077786)
chr4 (461-493)||(50205079-50205111)
chr4 (461-492)||(29319708-29319739)
chr4 (449-484)||(31944740-31944775)
chr4 (461-492)||(40529148-40529179)
chr4 (461-495)||(3292896-3292930)
chr4 (461-495)||(6690235-6690269)
chr4 (461-495)||(28877250-28877284)
chr4 (461-495)||(35546086-35546120)
chr4 (449-482)||(3074493-3074526)
chr4 (449-482)||(10632662-10632695)
chr4 (450-483)||(25182896-25182929)
chr4 (321-437)||(28877291-28877405)
chr4 (450-482)||(8897944-8897976)
chr4 (326-437)||(44156668-44156777)
[»] chr8 (34 HSPs)
chr8 (325-489)||(3435285-3435449)
chr8 (332-495)||(40470475-40470637)
chr8 (321-437)||(34136866-34136980)
chr8 (321-437)||(39914527-39914640)
chr8 (321-437)||(4404020-4404134)
chr8 (321-437)||(15838298-15838411)
chr8 (321-437)||(16788066-16788180)
chr8 (321-437)||(36408563-36408677)
chr8 (323-437)||(3648835-3648947)
chr8 (319-437)||(29728427-29728543)
chr8 (321-437)||(23402120-23402234)
chr8 (331-437)||(9877242-9877346)
chr8 (447-484)||(9256511-9256548)
chr8 (449-484)||(13152410-13152445)
chr8 (461-495)||(3648794-3648828)
chr8 (441-483)||(14446948-14446990)
chr8 (461-495)||(16788025-16788059)
chr8 (461-495)||(29728386-29728420)
chr8 (333-437)||(42230963-42231063)
chr8 (325-437)||(2729237-2729347)
chr8 (439-484)||(10014451-10014496)
chr8 (449-482)||(32359546-32359579)
chr8 (449-482)||(32372082-32372115)
chr8 (450-482)||(24592355-24592387)
chr8 (442-482)||(27190888-27190928)
chr8 (461-492)||(15838418-15838449)
chr8 (449-484)||(42447049-42447084)
chr8 (461-495)||(42231070-42231104)
chr8 (449-482)||(16532649-16532682)
chr8 (449-482)||(32342940-32342973)
chr8 (449-482)||(32355427-32355460)
chr8 (453-482)||(40146028-40146057)
chr8 (450-482)||(21958637-21958669)
chr8 (449-489)||(30791469-30791509)
[»] chr5 (36 HSPs)
chr5 (322-495)||(28801300-28801473)
chr5 (321-437)||(1776417-1776531)
chr5 (319-437)||(10033937-10034053)
chr5 (321-445)||(13817989-13818112)
chr5 (321-437)||(26283359-26283473)
chr5 (321-436)||(3155673-3155786)
chr5 (327-437)||(16155015-16155123)
chr5 (321-437)||(36293662-36293776)
chr5 (321-437)||(37254653-37254767)
chr5 (321-437)||(39434708-39434822)
chr5 (328-409)||(43068896-43068977)
chr5 (323-437)||(33430335-33430447)
chr5 (319-437)||(39657547-39657663)
chr5 (321-437)||(12278901-12279015)
chr5 (321-437)||(31680379-31680493)
chr5 (326-437)||(31501757-31501866)
chr5 (393-495)||(38269396-38269499)
chr5 (406-495)||(192038-192128)
chr5 (324-437)||(17332592-17332703)
chr5 (341-437)||(16333917-16334011)
chr5 (321-406)||(19985951-19986036)
chr5 (441-484)||(203966-204009)
chr5 (321-409)||(36291383-36291471)
chr5 (449-484)||(3055606-3055641)
chr5 (461-495)||(31680500-31680534)
chr5 (461-495)||(33430454-33430488)
chr5 (449-482)||(22712917-22712950)
chr5 (449-482)||(27168821-27168854)
chr5 (461-492)||(10034060-10034091)
chr5 (461-492)||(39657509-39657540)
chr5 (450-484)||(11852840-11852874)
chr5 (461-495)||(12278860-12278894)
chr5 (461-495)||(17332551-17332585)
chr5 (461-495)||(36291504-36291538)
chr5 (461-495)||(37254774-37254808)
chr5 (449-482)||(2229039-2229072)
[»] chr7 (42 HSPs)
chr7 (368-495)||(10868456-10868583)
chr7 (319-437)||(36630826-36630942)
chr7 (319-437)||(3114137-3114253)
chr7 (321-437)||(5555499-5555613)
chr7 (321-437)||(8394137-8394251)
chr7 (321-437)||(14777148-14777262)
chr7 (321-437)||(35090180-35090294)
chr7 (321-437)||(34389097-34389211)
chr7 (323-435)||(33685578-33685688)
chr7 (333-437)||(37002185-37002287)
chr7 (328-437)||(40920044-40920151)
chr7 (321-437)||(8867772-8867886)
chr7 (444-484)||(26782330-26782370)
chr7 (441-484)||(14088864-14088907)
chr7 (441-484)||(14398882-14398925)
chr7 (321-437)||(26624757-26624872)
chr7 (332-437)||(38638277-38638380)
chr7 (449-484)||(9230525-9230560)
chr7 (461-495)||(7002858-7002892)
chr7 (461-495)||(7048729-7048763)
chr7 (461-495)||(26624879-26624913)
chr7 (461-495)||(36658314-36658348)
chr7 (461-495)||(37002144-37002178)
chr7 (461-495)||(40920003-40920037)
chr7 (461-495)||(43184468-43184502)
chr7 (448-489)||(38575300-38575341)
chr7 (461-494)||(38638237-38638270)
chr7 (321-437)||(43184509-43184623)
chr7 (449-489)||(26493725-26493765)
chr7 (449-489)||(27387317-27387357)
chr7 (461-492)||(3114099-3114130)
chr7 (461-492)||(5555620-5555651)
chr7 (449-480)||(8638739-8638770)
chr7 (450-481)||(9557813-9557844)
chr7 (456-495)||(33685692-33685731)
chr7 (461-495)||(8394258-8394292)
chr7 (461-495)||(35090301-35090335)
chr7 (461-495)||(36630949-36630983)
chr7 (321-437)||(7002737-7002851)
chr7 (321-437)||(7048608-7048722)
chr7 (461-493)||(8867733-8867765)
chr7 (450-482)||(19400103-19400135)
[»] chr3 (34 HSPs)
chr3 (331-495)||(5135291-5135455)
chr3 (321-437)||(39771802-39771916)
chr3 (322-436)||(40081782-40081893)
chr3 (321-437)||(11018253-11018367)
chr3 (321-437)||(34084163-34084277)
chr3 (321-437)||(6269467-6269581)
chr3 (321-409)||(22968511-22968599)
chr3 (319-437)||(6930935-6931051)
chr3 (321-437)||(19390158-19390272)
chr3 (321-437)||(45182993-45183107)
chr3 (323-425)||(27935192-27935292)
chr3 (321-437)||(19565542-19565656)
chr3 (321-437)||(6503610-6503724)
chr3 (448-489)||(51262102-51262143)
chr3 (402-481)||(38282483-38282563)
chr3 (442-481)||(43585926-43585965)
chr3 (461-495)||(33041086-33041120)
chr3 (461-495)||(45183114-45183148)
chr3 (321-437)||(45335887-45336000)
chr3 (450-482)||(43137251-43137283)
chr3 (449-489)||(53710522-53710562)
chr3 (449-484)||(51408625-51408660)
chr3 (461-495)||(6930894-6930928)
chr3 (461-495)||(11018212-11018246)
chr3 (461-495)||(22922228-22922262)
chr3 (461-495)||(27935311-27935345)
chr3 (461-495)||(34084122-34084156)
chr3 (319-437)||(35514276-35514388)
chr3 (461-495)||(35514395-35514429)
chr3 (321-437)||(33040965-33041079)
chr3 (462-495)||(40081741-40081774)
chr3 (450-482)||(3856894-3856926)
chr3 (450-482)||(9743393-9743425)
chr3 (441-489)||(37381880-37381928)
[»] chr2 (36 HSPs)
chr2 (333-495)||(4555192-4555354)
chr2 (321-495)||(7072531-7072707)
chr2 (321-437)||(6403845-6403959)
chr2 (321-437)||(41251675-41251789)
chr2 (321-437)||(42439998-42440112)
chr2 (321-437)||(18981628-18981742)
chr2 (321-436)||(32127183-32127296)
chr2 (323-437)||(44084644-44084756)
chr2 (321-437)||(771011-771125)
chr2 (321-435)||(16405612-16405724)
chr2 (321-437)||(2958142-2958255)
chr2 (396-492)||(45121302-45121399)
chr2 (321-437)||(45418595-45418709)
chr2 (321-437)||(17445082-17445194)
chr2 (321-436)||(8147363-8147477)
chr2 (321-410)||(26237969-26238057)
chr2 (321-437)||(31581663-31581777)
chr2 (321-437)||(35962727-35962841)
chr2 (438-484)||(12539686-12539732)
chr2 (324-427)||(8059384-8059485)
chr2 (461-495)||(12756837-12756871)
chr2 (461-495)||(31581622-31581656)
chr2 (461-495)||(44084603-44084637)
chr2 (461-495)||(45418716-45418750)
chr2 (327-435)||(12756880-12756986)
chr2 (452-483)||(7886675-7886706)
chr2 (461-492)||(16405733-16405764)
chr2 (461-492)||(32127144-32127175)
chr2 (461-492)||(35962848-35962879)
chr2 (465-495)||(26238080-26238110)
chr2 (461-494)||(8147485-8147518)
chr2 (456-489)||(31392927-31392960)
chr2 (449-482)||(33453206-33453239)
chr2 (449-482)||(34317491-34317524)
chr2 (449-489)||(19951842-19951882)
chr2 (449-481)||(26656360-26656392)
[»] scaffold2142 (1 HSPs)
scaffold2142 (321-437)||(534-648)
[»] scaffold0002 (2 HSPs)
scaffold0002 (321-437)||(480498-480612)
scaffold0002 (447-482)||(435366-435401)
[»] chr6 (16 HSPs)
chr6 (321-437)||(398629-398743)
chr6 (321-409)||(34948825-34948913)
chr6 (321-437)||(18339118-18339232)
chr6 (325-409)||(33229403-33229487)
chr6 (324-437)||(13837836-13837947)
chr6 (321-437)||(28996742-28996856)
chr6 (321-437)||(29743295-29743409)
chr6 (449-489)||(11971083-11971123)
chr6 (461-495)||(18339239-18339273)
chr6 (461-495)||(28996863-28996897)
chr6 (449-484)||(3050987-3051022)
chr6 (461-492)||(13837954-13837985)
chr6 (461-492)||(34948761-34948792)
chr6 (449-489)||(12180536-12180576)
chr6 (447-475)||(24074534-24074562)
chr6 (441-477)||(30621288-30621324)
[»] scaffold0069 (1 HSPs)
scaffold0069 (328-437)||(17861-17968)
[»] scaffold0502 (2 HSPs)
scaffold0502 (321-437)||(5242-5356)
scaffold0502 (461-495)||(5363-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (319-437)||(31490-31606)
[»] scaffold0041 (2 HSPs)
scaffold0041 (328-437)||(52944-53051)
scaffold0041 (461-495)||(53058-53092)
[»] scaffold0178 (1 HSPs)
scaffold0178 (442-484)||(17857-17899)
[»] scaffold0019 (1 HSPs)
scaffold0019 (449-483)||(134871-134905)
[»] scaffold0726 (1 HSPs)
scaffold0726 (449-482)||(1007-1040)
[»] scaffold0015 (1 HSPs)
scaffold0015 (450-482)||(214179-214211)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 495
Target Start/End: Original strand, 33489392 - 33489873
Alignment:
Q  20 agttgaccaaaagctgagacaatagcttgcacacttgaattgcggacgacgaatgtaaagaaggtattggaattgtgannnnnnnnnncttcctgcagtc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  33489392 agttgaccaaaagctgagacaatagcttgcacacttgaattgcggacgacgaatgtaaagaaggtattggaattgtgatttttt-----ttcctgcagtc 33489486  T
Q  120 atattcaaatcatatattcttcttctaatctaccacaagtagcttgttcaattcccacttgtgttgggccaatgctagcaaaagtatatatcctgaatct 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33489487 atattcaaatcatatatccttcttctaatctaccacaagtagcttgttcaattcccacttgtgttgggccaatgctagcaaaagtatatatcctgaatct 33489586  T
Q  220 tgtttaattaatttgatctttcttccactcacacaccccgttaaactgtgcttgatgatggaaatgtggaatgtgctaaccaggggcggtttca----cc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    ||    
T  33489587 tgtttaattaatttgatctttcttccactcacacaccccgttaaacagtgcttgatgatggaaatgtggaatgtgctaaccaggggcggtttcaccaccc 33489686  T
Q  316 ggc-------gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggca 408  Q
    |||       ||||||||  |||| | | || |||||||| |||||||| |||||||| ||||| ||||||||||| |||  | |||||||||||| |||    
T  33489687 ggcgaccccggacggtcgttcgggattgttcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaatttgagca 33489786  T
Q  409 aaatttgaaaattctcacaagcaaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33489787 aaatctgaaaattctcacacgcaaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 33489873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 331 - 495
Target Start/End: Complemental strand, 41972420 - 41972256
Alignment:
Q  331 ggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagc 430  Q
    ||||||||| |||||||| | |||||| |  ||| | ||||| | ||||||||| ||| || |||||||||||||  ||||| |||||||||||||| ||    
T  41972420 ggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaaaaagaaaaatttggaaaaaatctgaaaattctcacacgc 41972321  T
Q  431 aaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41972320 aaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 41972256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 17445325 - 17445439
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||| ||||||||||||| |||||||| |  ||| ||||||||| ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  17445325 cggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 17445422  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  17445423 tctcacacgcaaatagg 17445439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 26144267 - 26144381
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | |||||  ||||||||||||||||| |||||||||||||||  |||||||||||    
T  26144267 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggc--aatttgaaaat 26144364  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  26144365 tgtcacacgtaaatagg 26144381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 319 - 435
Target Start/End: Complemental strand, 42311098 - 42310984
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    |||| |||||||||||||||| |||||||| | |||||| |||||| ||||||| || |||||||||||| || |||||||||||||||  ||| |||||    
T  42311098 gacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaagaaaaatttgggc--aatctgaaa 42311001  T
Q  419 attctcacaagcaaata 435  Q
    ||| ||||| |||||||    
T  42311000 attgtcacacgcaaata 42310984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 321532 - 321418
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| |||||||||||| |||||||| || ||||| |  ||| ||||||||||||||||||| ||| || |||||||||||||||  ||| |||||||    
T  321532 cggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggc--aatctgaaaat 321435  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||| | |||||||||    
T  321434 tctcatatgcaaatagg 321418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 7433457 - 7433545
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    |||||||||| |||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || ||||||| |||||||||    
T  7433457 cggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaa 7433545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 495
Target Start/End: Original strand, 28463165 - 28463265
Alignment:
Q  396 aaaaatttgggcaaaatttgaaaattctcacaagcaaatagg-cttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatct 494  Q
    ||||| ||| ||||||| |||||| | ||||| ||||| ||| |||||||| | |||| |||||||||||||||||||||||||||||  ||||||||||    
T  28463165 aaaaaattgtgcaaaatctgaaaaatttcacacgcaaagaggtcttggaaagggcattcacctcctaattttatttagcacactattggtgggttcatct 28463264  T
Q  495 c 495  Q
    |    
T  28463265 c 28463265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 3828994 - 3829110
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    ||||||||| |||| |||||| |||||||| | |||||| || ||| |||||||| |||||||||| ||| || |||||||||||||||  ||| |||||    
T  3828994 gacggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggc--aatctgaaa 3829091  T
Q  419 attctcacaagcaaatagg 437  Q
    ||| ||| | |||||||||    
T  3829092 attttcatacgcaaatagg 3829110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 447 - 489
Target Start/End: Complemental strand, 32379909 - 32379867
Alignment:
Q  447 gacatttacctcctaattttatttagcacactattgacgggtt 489  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  32379909 gacatttacctcctaattttatttagcacactattgacaggtt 32379867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 482
Target Start/End: Complemental strand, 11843957 - 11843917
Alignment:
Q  442 gaaaagacatttacctcctaattttatttagcacactattg 482  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  11843957 gaaaggacatttacctcctaattttatttagcacactattg 11843917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 3829116 - 3829150
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  3829116 aattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 447 - 484
Target Start/End: Original strand, 30054943 - 30054980
Alignment:
Q  447 gacatttacctcctaattttatttagcacactattgac 484  Q
    |||||||||||||||||||||||||||||| |||||||    
T  30054943 gacatttacctcctaattttatttagcacattattgac 30054980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 32982211 - 32982097
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||| ||||| ||||| |||||||| | |||||| || ||| | ||||| ||||||||| ||||| || |||||||||||||  | ||| |||||||    
T  32982211 cggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaagaaaaatttgg--acaatctgaaaat 32982114  T
Q  421 tctcacaagcaaatagg 437  Q
    | |||||  ||||||||    
T  32982113 tgtcacacacaaatagg 32982097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 35907564 - 35907678
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||| |||| |||||||| | |||||| || ||| ||||||| | ||||  ||| ||| || ||||||| ||||||   ||| |||||||    
T  35907564 cggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaagaaaattttggg--taatctgaaaat 35907661  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  35907662 tctcacacgcaaatagg 35907678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 25017514 - 25017550
Alignment:
Q  453 tacctcctaattttatttagcacactattgacgggtt 489  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25017514 tacctcctaattttatttagcacactattgacaggtt 25017550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 30559055 - 30559023
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    |||||||||||||||||||||||||||||||||    
T  30559055 atttacctcctaattttatttagcacactattg 30559023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 481
Target Start/End: Complemental strand, 40864770 - 40864738
Alignment:
Q  449 catttacctcctaattttatttagcacactatt 481  Q
    |||||||||||||||||||||||||||||||||    
T  40864770 catttacctcctaattttatttagcacactatt 40864738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 7433578 - 7433609
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  7433578 aattttatttagcacactattgacgggttcat 7433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 449 - 483
Target Start/End: Original strand, 9637245 - 9637279
Alignment:
Q  449 catttacctcctaattttatttagcacactattga 483  Q
    ||||||| |||||||||||||||||||||||||||    
T  9637245 catttacatcctaattttatttagcacactattga 9637279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 484
Target Start/End: Complemental strand, 52753870 - 52753836
Alignment:
Q  450 atttacctcctaattttatttagcacactattgac 484  Q
    ||||||||||||||||||| |||||||||||||||    
T  52753870 atttacctcctaattttatctagcacactattgac 52753836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 494
Target Start/End: Original strand, 17445446 - 17445479
Alignment:
Q  461 aattttatttagcacactattgacgggttcatct 494  Q
    |||||||||||||||| |||||||||||||||||    
T  17445446 aattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 23313298 - 23313339
Alignment:
Q  368 aaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    |||||| |||||||||||||| || |||||||||||||||||    
T  23313298 aaaagttcattaacacatttacaaaaagaaaaatttgggcaa 23313339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 48606663 - 48606630
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    |||||||||| |||||||||||||||||||||||    
T  48606663 catttacctcataattttatttagcacactattg 48606630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 170500 - 170468
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||| |||||    
T  170500 atttacctcctaattttatttagcacattattg 170468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 319 - 495
Target Start/End: Original strand, 30109966 - 30110142
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    ||||||||||||| ||||||| |||||||| | |||||| || |||||| |||| ||||||||||| ||| || ||||||||||||| |||||| |||||    
T  30109966 gacggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaatttggacaaaatatgaaa 30110065  T
Q  419 attctcacaagcaaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    | ||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30110066 aatctcacacgcaaataggctcggaaaatacatttaccacctaattttatttagcacactattgacgggttcatctc 30110142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 321 - 495
Target Start/End: Original strand, 48129978 - 48130145
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| |||||||||||| |||||||| | | |||| || ||| |||||||  |||||||||| ||| || ||||||||||||||       ||||||     
T  48129978 cggtcgaccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttggg-------tgaaaac 48130070  T
Q  421 tctcacaagcaaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48130071 tctcacacgcaaataggctcggaaaaaacatttacctcctaattttatttagcacactattgacgggttcatctc 48130145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 25930720 - 25930834
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  |||||||||||    
T  25930720 cggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatttgaaaat 25930817  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  25930818 tgtcacacgcaaatagg 25930834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 20129322 - 20129436
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||    
T  20129322 cggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 20129419  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  20129420 tgtcacacgtaaatagg 20129436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 26439434 - 26439320
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||||| || |||||||| | |||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||  ||| |||||||    
T  26439434 cggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggc--aatctgaaaat 26439337  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  26439336 tgtcacacgtaaatagg 26439320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 34407439 - 34407325
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||||| || |||||||| | |||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||  ||| |||||||    
T  34407439 cggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggc--aatctgaaaat 34407342  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  34407341 tgtcacacgtaaatagg 34407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 43143739 - 43143625
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  43143739 cggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 43143642  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  43143641 tctcacacgcaaatagg 43143625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 323 - 437
Target Start/End: Original strand, 43355918 - 43356030
Alignment:
Q  323 gtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattc 422  Q
    |||||||||||||| || |||||||| | |||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||  ||| ||||||||     
T  43355918 gtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggc--aatctgaaaattg 43356015  T
Q  423 tcacaagcaaatagg 437  Q
    ||||| | |||||||    
T  43356016 tcacacgtaaatagg 43356030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 445
Target Start/End: Complemental strand, 17511389 - 17511266
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||| | ||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  |||||||||||    
T  17511389 cggtcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatttgaaaat 17511292  T
Q  421 tctcacaagcaaatagg-cttggaaa 445  Q
    | | ||| ||||||||| ||||||||    
T  17511291 tgttacacgcaaataggtcttggaaa 17511266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 13012200 - 13012314
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| | |||| | |||||  ||||||||||||||||| |||||||||||||||  |||||||||||    
T  13012200 cggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggc--aatttgaaaat 13012297  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  13012298 tgtcacacgtaaatagg 13012314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 36382500 - 36382387
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | ||||||||||||||||||||| || |||||||||||||  | ||| |||||||    
T  36382500 cggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa-aagaaaaatttgg--acaatctgaaaat 36382404  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  36382403 tgtcacacgcaaatagg 36382387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 47500785 - 47500899
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | |||||  ||||||||||||||| | |||||||||||||||  |||||||||||    
T  47500785 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaaaagaaaaatttgggc--aatttgaaaat 47500882  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  47500883 tgtcacacgtaaatagg 47500899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 29996140 - 29996050
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    |||||||| |||| ||||||| |||||||| |||||||| |||||| | |||||||||||||||||||||  | |||||||||||||||||    
T  29996140 gacggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaa 29996050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 3293051 - 3292937
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| |  ||||| || ||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  3293051 cggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 3292954  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  3292953 tctcacacgcaaatagg 3292937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 6690390 - 6690276
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| |  ||||| || ||| ||||||| | ||||||||| ||| || ||||||||||||||||||   |||||||    
T  6690390 cggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaaa--ctgaaaat 6690293  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  6690292 tctcacacgcaaatagg 6690276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 10353039 - 10352925
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||| ||| |||||||| | |||||| || ||| | ||||||||||||||||||||| || | |||||||||||||  ||| |||||||    
T  10353039 cggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggc--aatctgaaaat 10352942  T
Q  421 tctcacaagcaaatagg 437  Q
    ||| ||| |||||||||    
T  10352941 tcttacacgcaaatagg 10352925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 42333931 - 42333817
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| |||||||| ||| |||||||| | |||||| |||||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  42333931 cggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 42333834  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  42333833 tctcacacgcaaatagg 42333817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 436
Target Start/End: Complemental strand, 30216897 - 30216784
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| || ||| |||||||   ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  30216897 cggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 30216800  T
Q  421 tctcacaagcaaatag 436  Q
    ||||||| ||||||||    
T  30216799 tctcacatgcaaatag 30216784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 437
Target Start/End: Original strand, 6235577 - 6235646
Alignment:
Q  366 ccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagcaaatagg 437  Q
    ||||||||||||||||||||||| || |||||||||||||||  |||||||||||| ||||| |||||||||    
T  6235577 ccaaaagtccattaacacatttacaaaaagaaaaatttgggc--aatttgaaaattgtcacacgcaaatagg 6235646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 437
Target Start/End: Original strand, 48989347 - 48989454
Alignment:
Q  328 ccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcaca 427  Q
    ||||| |||||| |||||||| | |||||| || |||  |||||||||||||||||| ||| || |||||||||||||||  ||| |||||||||||| |    
T  48989347 ccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattctcata 48989444  T
Q  428 agcaaatagg 437  Q
     |||||||||    
T  48989445 cgcaaatagg 48989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 411
Target Start/End: Original strand, 45194193 - 45194278
Alignment:
Q  326 gcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaa 411  Q
    |||||| |||||||||||||||| | |||||| |||||| ||||||||||||||||||| ||| || || ||||  ||||||||||    
T  45194193 gcccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaaaaatattgggcaaaa 45194278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 29319860 - 29319772
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    |||||| || ||||||||| |||||||| | |||||| |||||| ||||||  ||||||||||||||| || |||||||||||| ||||    
T  29319860 cggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaagaaaaatttgagcaa 29319772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 437
Target Start/End: Original strand, 40529028 - 40529141
Alignment:
Q  322 ggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaatt 421  Q
    ||||| |||| ||||||| |||||||| | |||||| |||||| | ||||   |||||||||||||| || |||||||||||||  | ||||||||||||    
T  40529028 ggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaaaaagaaaaatttgg--acaatttgaaaatt 40529125  T
Q  422 ctcacaagcaaatagg 437  Q
     ||||| |||||||||    
T  40529126 gtcacatgcaaatagg 40529141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 50205232 - 50205118
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||| |||||||| |||||||| | |||||| |  ||| ||||||| | ||||||||| ||| || |||||||| |||| |||  | |||||||    
T  50205232 cggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattggacaa--tctgaaaat 50205135  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  50205134 tctcacacgcaaatagg 50205118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 437
Target Start/End: Original strand, 1817774 - 1817843
Alignment:
Q  366 ccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagcaaatagg 437  Q
    ||||||||||||||| |||||||||| |||||||||||||||  ||| | |||||||| ||| |||||||||    
T  1817774 ccaaaagtccattaatacatttataaaaagaaaaatttgggc--aatctaaaaattcttacacgcaaatagg 1817843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 482
Target Start/End: Complemental strand, 12211279 - 12211244
Alignment:
Q  447 gacatttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||||||||||    
T  12211279 gacatttacctcctaattttatttagcacactattg 12211244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 6235653 - 6235687
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  6235653 aattttatttagcacactattgacgggttcatctc 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 25930841 - 25930875
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  25930841 aattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 30216776 - 30216742
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  30216776 aattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 36382380 - 36382346
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  36382380 aattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 44156784 - 44156818
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  44156784 aattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 48989461 - 48989495
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  48989461 aattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 4325538 - 4325575
Alignment:
Q  452 ttacctcctaattttatttagcacactattgacgggtt 489  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  4325538 ttacctcctaattttatttagcacactattgacaggtt 4325575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 30077786 - 30077702
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgg 405  Q
    ||||||||| ||||| ||| |||| ||| | |||||| || ||| | |||||| |||||||||||||| || |||||||||||||    
T  30077786 cggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttgg 30077702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 493
Target Start/End: Complemental strand, 50205111 - 50205079
Alignment:
Q  461 aattttatttagcacactattgacgggttcatc 493  Q
    |||||||||||||||||||||||||||||||||    
T  50205111 aattttatttagcacactattgacgggttcatc 50205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Complemental strand, 29319739 - 29319708
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  29319739 aattttatttagcacactattgacgggttcat 29319708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 484
Target Start/End: Original strand, 31944740 - 31944775
Alignment:
Q  449 catttacctcctaattttatttagcacactattgac 484  Q
    |||||||||||||||||||||||| |||||||||||    
T  31944740 catttacctcctaattttatttagtacactattgac 31944775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 40529148 - 40529179
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  40529148 aattttatttagcacactattgacgggttcat 40529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 3292930 - 3292896
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||||||||||||||||| |||||||||    
T  3292930 aattttatttagcacactattgacgagttcatctc 3292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 6690269 - 6690235
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||| ||||    
T  6690269 aattttatttagcacactattgacgggttcgtctc 6690235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 28877284 - 28877250
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||||||||||||||| |||||||||||    
T  28877284 aattttatttagcacactattgatgggttcatctc 28877250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 35546086 - 35546120
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||||||||||||||| |||||||||||    
T  35546086 aattttatttagcacactattgatgggttcatctc 35546120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 3074493 - 3074526
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    |||||| |||||||||||||||||||||||||||    
T  3074493 catttatctcctaattttatttagcacactattg 3074526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 10632695 - 10632662
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    |||||||||||||||||||||| |||||||||||    
T  10632695 catttacctcctaattttattttgcacactattg 10632662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 25182929 - 25182896
Alignment:
Q  450 atttacctcctaattttatttagcacactattga 483  Q
    |||||||| |||||||||||||||||||||||||    
T  25182929 atttaccttctaattttatttagcacactattga 25182896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 28877405 - 28877291
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||  ||||| |||| |||||||| | |||||| | |||| | |||||   ||||||||  |||||| ||||||||||||||  |||| | |||||    
T  28877405 cggtcgcttgggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttggg--aaatctaaaaat 28877308  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  28877307 tctcacacgcaaatagg 28877291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 8897976 - 8897944
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||| |||||||    
T  8897976 atttacctcctaattttatttagcaaactattg 8897944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 437
Target Start/End: Original strand, 44156668 - 44156777
Alignment:
Q  326 gcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctca 425  Q
    |||||||||| | | |||||||| | |||||| || ||| ||||||| | ||||||||| ||| || ||||||| ||||| |||  | |||||||||||     
T  44156668 gcccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaa--tctgaaaattctct 44156765  T
Q  426 caagcaaatagg 437  Q
    || |||||||||    
T  44156766 cacgcaaatagg 44156777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 325 - 489
Target Start/End: Original strand, 3435285 - 3435449
Alignment:
Q  325 cgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctc 424  Q
    |||||||||| |||| |||||||| | |||||| || ||| ||||||  ||||||||||| ||| || |||||||||||||||||||| |||||||||||    
T  3435285 cgcccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaattctc 3435384  T
Q  425 acaagcaaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggtt 489  Q
    | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3435385 aaacgcaaataggcttggaaaagacatttacctcctaactttatttagcacactattgacgggtt 3435449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 332 - 495
Target Start/End: Complemental strand, 40470637 - 40470475
Alignment:
Q  332 gctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagca 431  Q
    |||||||| |||||||| | |||||| || |||| |||||||||||||||||| |||||| || ||||||| ||||||||| | |||| || |||| | |    
T  40470637 gctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaaaaaaaatt-gggcaaaatctaaaaactcgcacacgta 40470539  T
Q  432 aataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40470538 aataggctccgaaaagacatttaccttctaattttatttagcacactattgacgggttcatctc 40470475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 34136980 - 34136866
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| ||||||||| ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  34136980 cggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 34136883  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  34136882 tctcacacgcaaatagg 34136866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 39914527 - 39914640
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | |||||  ||||||||||||||||| || ||||||||||||  |||||||||||    
T  39914527 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataa-aaaaaaaatttgggc--aatttgaaaat 39914623  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||||| |||||||    
T  39914624 tgtcacaagtaaatagg 39914640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 4404020 - 4404134
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| ||||||| | ||||||| | ||| || |||||||||||||||  ||| | |||||    
T  4404020 cggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggc--aatctaaaaat 4404117  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  4404118 tctcacacgcaaatagg 4404134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 15838298 - 15838411
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||| ||||||||||||  |||||||| | |||||| |||||| | ||||||||||||||||||||| || |||||||||||||||  ||| |||||||    
T  15838298 cggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa-aagaaaaatttgggc--aatctgaaaat 15838394  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  15838395 tttcacacgcaaatagg 15838411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 16788180 - 16788066
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| | ||||     
T  16788180 cggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatcttaaaac 16788083  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  16788082 tctcacacgcaaatagg 16788066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 36408563 - 36408677
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |  ||| ||||||||||||||||||||||| || ||||||| ||| |||  |||||||||||    
T  36408563 cggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggc--aatttgaaaat 36408660  T
Q  421 tctcacaagcaaatagg 437  Q
    ||| ||| || ||||||    
T  36408661 tcttacacgctaatagg 36408677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 437
Target Start/End: Complemental strand, 3648947 - 3648835
Alignment:
Q  323 gtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattc 422  Q
    ||||||||||||||||| ||||||||   |||||| |||||| ||||||| ||||||||||||||| || ||||||| |||||||  ||| ||||||||     
T  3648947 gtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggc--aatctgaaaattg 3648850  T
Q  423 tcacaagcaaatagg 437  Q
    ||||| |||| ||||    
T  3648849 tcacacgcaagtagg 3648835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 437
Target Start/End: Complemental strand, 29728543 - 29728427
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    |||||||||||| |||||||| |||| ||| | |||||| |||||| |||||||  |||||||||||||| || |||||||||||||||  ||| |||||    
T  29728543 gacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggc--aatctgaaa 29728446  T
Q  419 attctcacaagcaaatagg 437  Q
    ||| | ||| |||||||||    
T  29728445 attgtgacacgcaaatagg 29728427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 23402120 - 23402234
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| ||||| || | | |||| || ||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  23402120 cggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 23402217  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  23402218 tctcacacgcaaatagg 23402234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 437
Target Start/End: Original strand, 9877242 - 9877346
Alignment:
Q  331 ggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagc 430  Q
    ||||||||  |||||||| | |||||| ||  || ||||||||| ||||||||| ||| || |||||||||||||||  ||| |||||||||||||| ||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattctcacatgc 9877339  T
Q  431 aaatagg 437  Q
    |||||||    
T  9877340 aaatagg 9877346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 484
Target Start/End: Original strand, 9256511 - 9256548
Alignment:
Q  447 gacatttacctcctaattttatttagcacactattgac 484  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9256511 gacatttacctcctaattttatttagcacactattgac 9256548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 484
Target Start/End: Complemental strand, 13152445 - 13152410
Alignment:
Q  449 catttacctcctaattttatttagcacactattgac 484  Q
    ||||||||||||||||||||||||||||||||||||    
T  13152445 catttacctcctaattttatttagcacactattgac 13152410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 3648828 - 3648794
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  3648828 aattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 483
Target Start/End: Original strand, 14446948 - 14446990
Alignment:
Q  441 ggaaaagacatttacctcctaattttatttagcacactattga 483  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  14446948 ggaaaggacattcacctcctaattttatttagcacactattga 14446990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 16788059 - 16788025
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  16788059 aattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 29728420 - 29728386
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  29728420 aattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 42230963 - 42231063
Alignment:
Q  333 ctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagcaa 432  Q
    |||| ||||||||||| | |||||| |  |||  |||||||||||||||||  ||| || |||||||||||||||||  |||||||||||||| | ||||    
T  42230963 ctcgttcaataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaaaaagaaaaatttgggcaa--tttgaaaattctcatatgcaa 42231058  T
Q  433 atagg 437  Q
    |||||    
T  42231059 atagg 42231063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 437
Target Start/End: Complemental strand, 2729347 - 2729237
Alignment:
Q  325 cgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctc 424  Q
    ||||||||||||||| ||||||||   |||||| |  ||| ||||||| ||||||||||| |||||| ||||||  ||| |||  |||||||||| ||||    
T  2729347 cgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaattttttggc--aatttgaaaactctc 2729250  T
Q  425 acaagcaaatagg 437  Q
    | | |||||||||    
T  2729249 atacgcaaatagg 2729237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 10014496 - 10014451
Alignment:
Q  439 ttggaaaagacatttacctcctaattttatttagcacactattgac 484  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||    
T  10014496 ttggaaagggcatttacctcctaattttatttagcacattattgac 10014451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 32359546 - 32359579
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||||||||    
T  32359546 catttacctcctaattttatttagcacactattg 32359579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 32372082 - 32372115
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||||||||    
T  32372082 catttacctcctaattttatttagcacactattg 32372115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 24592387 - 24592355
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    |||||||||||||||||||||||||||||||||    
T  24592387 atttacctcctaattttatttagcacactattg 24592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 482
Target Start/End: Original strand, 27190888 - 27190928
Alignment:
Q  442 gaaaagacatttacctcctaattttatttagcacactattg 482  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  27190888 gaaaggacatttacctcctaattttatttagtacactattg 27190928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 15838418 - 15838449
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  15838418 aattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 484
Target Start/End: Original strand, 42447049 - 42447084
Alignment:
Q  449 catttacctcctaattttatttagcacactattgac 484  Q
    ||||||||||||||||||||||||||||||| ||||    
T  42447049 catttacctcctaattttatttagcacactaatgac 42447084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 42231070 - 42231104
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||| ||||||||    
T  42231070 aattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 16532682 - 16532649
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||| ||||||    
T  16532682 catttacctcctaattttatttagcacgctattg 16532649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 32342940 - 32342973
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||| ||||    
T  32342940 catttacctcctaattttatttagcacaccattg 32342973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 32355427 - 32355460
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||| ||||    
T  32355427 catttacctcctaattttatttagcacaccattg 32355460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 482
Target Start/End: Complemental strand, 40146057 - 40146028
Alignment:
Q  453 tacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||||    
T  40146057 tacctcctaattttatttagcacactattg 40146028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 21958637 - 21958669
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    |||||||||||||||||||||||||| ||||||    
T  21958637 atttacctcctaattttatttagcacgctattg 21958669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 30791509 - 30791469
Alignment:
Q  449 catttacctcctaattttatttagcacactattgacgggtt 489  Q
    |||||||| |||||||||||||||||| |||||||| ||||    
T  30791509 catttaccacctaattttatttagcacgctattgacaggtt 30791469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 322 - 495
Target Start/End: Original strand, 28801300 - 28801473
Alignment:
Q  322 ggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaatt 421  Q
    |||||||| ||||||||| |||||||| | |||||| |  ||||||||||| ||||||||||| ||| || |||||||||||||| ||||| ||||||||    
T  28801300 ggtcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaatt 28801399  T
Q  422 ctcacaagcaaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    |||||| |||||||||||  ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||    
T  28801400 ctcacacgcaaataggctcagaaaagacatttaactcctaattttatttagctcactattgacaggttcatctc 28801473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 1776531 - 1776417
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| |||||||| | |||| | ||||||||||||||||||||| || |||||||||||||||  |||||||||||    
T  1776531 cggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggc--aatttgaaaat 1776434  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  1776433 tgtcacacgcaaatagg 1776417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 10033937 - 10034053
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    |||| |||||||||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||    
T  10033937 gacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaa 10034034  T
Q  419 attctcacaagcaaatagg 437  Q
    ||| ||||| |||||||||    
T  10034035 attgtcacacgcaaatagg 10034053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 321 - 445
Target Start/End: Original strand, 13817989 - 13818112
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||| ||||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||    
T  13817989 cggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 13818086  T
Q  421 tctcacaagcaaatagg-cttggaaa 445  Q
    | ||||| ||||||||| ||||||||    
T  13818087 tgtcacacgcaaataggtcttggaaa 13818112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 26283473 - 26283359
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | |||||| ||||||||||||||||| |||||||||||||||  ||| |||||||    
T  26283473 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggc--aatctgaaaat 26283376  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  26283375 tgtcacacgtaaatagg 26283359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 436
Target Start/End: Complemental strand, 3155786 - 3155673
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||| |||||||||||||||||||| | |||||  |||||| | |||||||||||||||||||||||| |||||||||||||  | ||| |||||||    
T  3155786 cggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaaaagaaaaatttgg--acaatctgaaaat 3155689  T
Q  421 tctcacaagcaaatag 436  Q
    | ||||| ||||||||    
T  3155688 tgtcacacgcaaatag 3155673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 437
Target Start/End: Original strand, 16155015 - 16155123
Alignment:
Q  327 cccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcac 426  Q
    ||||||||||||| |||||||| | |||||| |||||| ||||||| |||||||||||||||||| ||||||||||| |||  ||| |||||||| ||||    
T  16155015 cccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggc--aatctgaaaattgtcac 16155112  T
Q  427 aagcaaatagg 437  Q
    | |||||||||    
T  16155113 acgcaaatagg 16155123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 36293776 - 36293662
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| |||| ||||||| |||||||| |||||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||    
T  36293776 cggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 36293679  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  36293678 tgtcacacgtaaatagg 36293662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 37254653 - 37254767
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||| ||||||||| |||||||| | |||||| || ||| ||||||||| ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  37254653 cggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 37254750  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  37254751 tctcacacgcaaatagg 37254767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 39434708 - 39434822
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| ||||||||   |||||| |||||| ||||||| ||||||||||||||| || | |||||||||||||  ||| |||||||    
T  39434708 cggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatgaaaaatttgggc--aatctgaaaat 39434805  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  39434806 tgtcacatgtaaatagg 39434822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 43068896 - 43068977
Alignment:
Q  328 ccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    |||||||||||||||||||||   |||||| || ||| ||||||||||||||||||||||| || |||||||||||||||||    
T  43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaa 43068977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 437
Target Start/End: Original strand, 33430335 - 33430447
Alignment:
Q  323 gtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattc 422  Q
    ||||||||||||||||| |||||||| |  ||||| || ||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattc 33430432  T
Q  423 tcacaagcaaatagg 437  Q
    ||||| |||||||||    
T  33430433 tcacacgcaaatagg 33430447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 437
Target Start/End: Complemental strand, 39657663 - 39657547
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    ||||||||  ||||||||||  |||||||| | |||||| |||||| |||||||  |||||||||||||| || |||||||||||||||  ||| |||||    
T  39657663 gacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggc--aatctgaaa 39657566  T
Q  419 attctcacaagcaaatagg 437  Q
    ||| ||||| |||||||||    
T  39657565 attgtcacacgcaaatagg 39657547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 12279015 - 12278901
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||| ||||||| |||||||| | |||||| || ||| ||||| | | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  12279015 cggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 12278918  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  12278917 tctcacacgcaaatagg 12278901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 31680379 - 31680493
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| ||||||||    ||||| || ||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  31680379 cggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 31680476  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  31680477 tctcacatgcaaatagg 31680493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 437
Target Start/End: Complemental strand, 31501866 - 31501757
Alignment:
Q  326 gcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctca 425  Q
    |||||||||||||| |||||||| | |||||| || ||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||||||     
T  31501866 gcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattctcg 31501769  T
Q  426 caagcaaatagg 437  Q
    || |||||||||    
T  31501768 cacgcaaatagg 31501757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 393 - 495
Target Start/End: Complemental strand, 38269499 - 38269396
Alignment:
Q  393 aagaaaaatttgggcaaaatttgaaaattctcacaagcaaataggc-ttggaaaagacatttacctcctaattttatttagcacactattgacgggttca 491  Q
    |||||||||||||||||||| | |||| | |||||   ||| |||  || ||||||||||||||||||||||||||||| ||||||||||| | ||||||    
T  38269499 aagaaaaatttgggcaaaatctaaaaaatttcacacagaaagaggtgttagaaaagacatttacctcctaattttatttggcacactattggcaggttca 38269400  T
Q  492 tctc 495  Q
    ||||    
T  38269399 tctc 38269396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 406 - 495
Target Start/End: Original strand, 192038 - 192128
Alignment:
Q  406 gcaaaatttgaaaattctcacaagcaaataggctt-ggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    ||||||| | |||||||||||| ||||| ||| || |||||||| |||||||| ||||||||||||| |||||||||||  ||||||||||    
T  192038 gcaaaatctaaaaattctcacacgcaaagaggtttcggaaaagatatttaccttctaattttatttaacacactattgataggttcatctc 192128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 17332703 - 17332592
Alignment:
Q  324 tcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattct 423  Q
    |||||||||||||||| |||||||| | | |||| || ||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||| |    
T  17332703 tcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaatttt 17332606  T
Q  424 cacaagcaaatagg 437  Q
    |||| |||||||||    
T  17332605 cacacgcaaatagg 17332592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 16334011 - 16333917
Alignment:
Q  341 ataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagcaaatagg 437  Q
    |||||||| | |||||| | |||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||| ||||| |||||||||    
T  16334011 ataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaattgtcacacgcaaatagg 16333917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 19985951 - 19986036
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttggg 406  Q
    |||||| ||| |||||||| |||||||| | |||||| | |||| |||||||||||||| |||||||| || ||||||||||||||    
T  19985951 cggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaatttggg 19986036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 203966 - 204009
Alignment:
Q  441 ggaaaagacatttacctcctaattttatttagcacactattgac 484  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  203966 ggaaaggacatttacctcctaattttatttagcacactattgac 204009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 36291383 - 36291471
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaacc-aaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    |||||| ||||| ||||||||||||||| | |||||| | || |||| |||||| |||||||||||||| || |||||||||||||||||    
T  36291383 cggtcgtccgggttcgatcaataatttttgcacattaga-tctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaa 36291471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 484
Target Start/End: Original strand, 3055606 - 3055641
Alignment:
Q  449 catttacctcctaattttatttagcacactattgac 484  Q
    ||||||||||||||||||||||||||||||||||||    
T  3055606 catttacctcctaattttatttagcacactattgac 3055641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 31680500 - 31680534
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  31680500 aattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 33430454 - 33430488
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  33430454 aattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 22712950 - 22712917
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||||||||    
T  22712950 catttacctcctaattttatttagcacactattg 22712917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 27168854 - 27168821
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||||||||    
T  27168854 catttacctcctaattttatttagcacactattg 27168821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 10034060 - 10034091
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  10034060 aattttatttagcacactattgacgggttcat 10034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Complemental strand, 39657540 - 39657509
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  39657540 aattttatttagcacactattgacgggttcat 39657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 484
Target Start/End: Original strand, 11852840 - 11852874
Alignment:
Q  450 atttacctcctaattttatttagcacactattgac 484  Q
    |||||||| ||||||||||||||||||||||||||    
T  11852840 atttaccttctaattttatttagcacactattgac 11852874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 12278894 - 12278860
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||| ||||||||||    
T  12278894 aattttatttagcacactattgacaggttcatctc 12278860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 17332585 - 17332551
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||| ||||||||    
T  17332585 aattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 36291504 - 36291538
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||| |||||||||||||||||||||||    
T  36291504 aattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 37254774 - 37254808
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||| ||||||||||||||||||    
T  37254774 aattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 2229039 - 2229072
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||| ||||||    
T  2229039 catttacctcctaattttatttagcacgctattg 2229072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 368 - 495
Target Start/End: Complemental strand, 10868583 - 10868456
Alignment:
Q  368 aaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagcaaataggcttggaaaagacatttacctcctaatttta 467  Q
    ||||| ||||||||||||||| || |||||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  10868583 aaaagcccattaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaataggctcggaaaagacatttacctcctaatttta 10868484  T
Q  468 tttagcacactattgacgggttcatctc 495  Q
    ||||||||||| ||||||||||||||||    
T  10868483 tttagcacacttttgacgggttcatctc 10868456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 36630826 - 36630942
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    ||||||||||||||||||||| |||||||| | |||||| |||||| | ||||||||||||||||||||| || |||||||||||||||  ||| |||||    
T  36630826 gacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggc--aatctgaaa 36630923  T
Q  419 attctcacaagcaaatagg 437  Q
    ||| ||||| |||||||||    
T  36630924 attgtcacacgcaaatagg 36630942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 437
Target Start/End: Complemental strand, 3114253 - 3114137
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    ||||||||||||||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||    
T  3114253 gacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaa 3114156  T
Q  419 attctcacaagcaaatagg 437  Q
    ||| |||||  ||||||||    
T  3114155 attgtcacacacaaatagg 3114137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 5555499 - 5555613
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| ||||||| |||||||| |||||| || |||||||||||||||  ||| |||||||    
T  5555499 cggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaagaaaaatttgggc--aatctgaaaat 5555596  T
Q  421 tctcacaagcaaatagg 437  Q
    | |||||  ||||||||    
T  5555597 tgtcacacacaaatagg 5555613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 8394137 - 8394251
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | ||||||||||||||||||||| || | |||||||||||||  ||| |||||||    
T  8394137 cggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggc--aatctgaaaat 8394234  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  8394235 tgtcacacgtaaatagg 8394251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 14777262 - 14777148
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| |||||||  |||||||||||||| || |||||||||||||||  ||| |||||||    
T  14777262 cggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 14777165  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  14777164 tgtcacacgtaaatagg 14777148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 35090180 - 35090294
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||||||||||||||||| | |||||| || ||| ||||||| | ||||||||| ||| || ||||||||||||||   ||| |||||||    
T  35090180 cggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttggg--taatctgaaaat 35090277  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  35090278 tctcacacgcaaatagg 35090294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 34389211 - 34389097
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| || ||| |||||||   ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  34389211 cggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 34389114  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  34389113 tctcacacgcaaatagg 34389097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 435
Target Start/End: Original strand, 33685578 - 33685688
Alignment:
Q  323 gtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattc 422  Q
    ||||| ||||||||||| |||||||| | |||||| || ||| ||||||| ||||||||||| ||| || |||||||||||||||  ||| |||||||||    
T  33685578 gtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattc 33685675  T
Q  423 tcacaagcaaata 435  Q
    ||| | |||||||    
T  33685676 tcatacgcaaata 33685688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 333 - 437
Target Start/End: Complemental strand, 37002287 - 37002185
Alignment:
Q  333 ctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagcaa 432  Q
    ||||||| |||||||| | |||||| || ||| ||||||||| ||||||||| ||| || |||||||||||||||  ||| |||||||||||||| ||||    
T  37002287 ctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattctcacacgcaa 37002190  T
Q  433 atagg 437  Q
    |||||    
T  37002189 atagg 37002185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 437
Target Start/End: Complemental strand, 40920151 - 40920044
Alignment:
Q  328 ccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcaca 427  Q
    |||||||||||| |||||||| | |||||| | | || ||||||| | ||||||||||||| || |||||||||||||  | ||| ||||||||||||||    
T  40920151 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttgg--acaatctgaaaattctcaca 40920054  T
Q  428 agcaaatagg 437  Q
     |||||||||    
T  40920053 tgcaaatagg 40920044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 8867886 - 8867772
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | | |||| || ||| ||||||| | ||||| ||||||| || |||||||||||||||  |||  ||||||    
T  8867886 cggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggc--aatcggaaaat 8867789  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  8867788 tttcacacgcaaatagg 8867772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 26782370 - 26782330
Alignment:
Q  444 aaagacatttacctcctaattttatttagcacactattgac 484  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26782370 aaagacatttacctcctaattttatttagcacactattgac 26782330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 14088864 - 14088907
Alignment:
Q  441 ggaaaagacatttacctcctaattttatttagcacactattgac 484  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  14088864 ggaaaaggcatttacctcctaattttatttagcacactattgac 14088907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 14398882 - 14398925
Alignment:
Q  441 ggaaaagacatttacctcctaattttatttagcacactattgac 484  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  14398882 ggaaaaggcatttacctcctaattttatttagcacactattgac 14398925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 26624757 - 26624872
Alignment:
Q  321 cggtcgcccgggctcgat-caataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaa 419  Q
    |||||||| ||||||||| | |||||||| | | |||| || ||| ||||||||  ||||||||| ||| || |||||||||||||||  ||| ||||||    
T  26624757 cggtcgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaa 26624854  T
Q  420 ttctcacaagcaaatagg 437  Q
    |||||||| |||||||||    
T  26624855 ttctcacacgcaaatagg 26624872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 437
Target Start/End: Complemental strand, 38638380 - 38638277
Alignment:
Q  332 gctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagca 431  Q
    |||||||  |||||||| | |||||| |  ||| ||||||||| ||||||||| ||| || |||||||||||||||  ||| |||||||||||||| |||    
T  38638380 gctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattctcacacgca 38638283  T
Q  432 aatagg 437  Q
    ||||||    
T  38638282 aatagg 38638277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 484
Target Start/End: Original strand, 9230525 - 9230560
Alignment:
Q  449 catttacctcctaattttatttagcacactattgac 484  Q
    ||||||||||||||||||||||||||||||||||||    
T  9230525 catttacctcctaattttatttagcacactattgac 9230560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 7002858 - 7002892
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  7002858 aattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 7048729 - 7048763
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  7048729 aattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 26624879 - 26624913
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  26624879 aattttatttagcacactattgacgggttcatctc 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 36658314 - 36658348
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  36658314 aattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 37002178 - 37002144
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  37002178 aattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 40920037 - 40920003
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  40920037 aattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 43184502 - 43184468
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  43184502 aattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 38575341 - 38575300
Alignment:
Q  448 acatttacctcctaattttatttagcacactattgacgggtt 489  Q
    |||||||||||||||||||||||||||| |||||||| ||||    
T  38575341 acatttacctcctaattttatttagcacgctattgacaggtt 38575300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 461 - 494
Target Start/End: Complemental strand, 38638270 - 38638237
Alignment:
Q  461 aattttatttagcacactattgacgggttcatct 494  Q
    ||||||||||||||||||||||||||||||||||    
T  38638270 aattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 43184623 - 43184509
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||| ||||||||||| ||||||||    ||| | ||| || ||||||| | ||||||| | ||| || |||||||||||||||||  | |||||||    
T  43184623 cggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaa--tctgaaaat 43184526  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  43184525 tctcacacgcaaatagg 43184509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 26493765 - 26493725
Alignment:
Q  449 catttacctcctaattttatttagcacactattgacgggtt 489  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  26493765 catttacctcctaattttatttagcacgctattgacaggtt 26493725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 27387357 - 27387317
Alignment:
Q  449 catttacctcctaattttatttagcacactattgacgggtt 489  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  27387357 catttacctcctaattttatttagcacgctattgacaggtt 27387317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Complemental strand, 3114130 - 3114099
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  3114130 aattttatttagcacactattgacgggttcat 3114099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 5555620 - 5555651
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  5555620 aattttatttagcacactattgacgggttcat 5555651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 480
Target Start/End: Original strand, 8638739 - 8638770
Alignment:
Q  449 catttacctcctaattttatttagcacactat 480  Q
    ||||||||||||||||||||||||||||||||    
T  8638739 catttacctcctaattttatttagcacactat 8638770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 481
Target Start/End: Original strand, 9557813 - 9557844
Alignment:
Q  450 atttacctcctaattttatttagcacactatt 481  Q
    ||||||||||||||||||||||||||||||||    
T  9557813 atttacctcctaattttatttagcacactatt 9557844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 495
Target Start/End: Original strand, 33685692 - 33685731
Alignment:
Q  456 ctcctaattttatttagcacactattgacgggttcatctc 495  Q
    ||| |||||||||||||||||||||||||||||| |||||    
T  33685692 ctcataattttatttagcacactattgacgggtttatctc 33685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 8394258 - 8394292
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||||||||||||||||||||| |||||    
T  8394258 aattttatttagcacactattgacgggtttatctc 8394292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 35090301 - 35090335
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||| ||||||||    
T  35090301 aattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 36630949 - 36630983
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||| |||||||||||||||||||||||||||    
T  36630949 aattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 7002737 - 7002851
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |  |||||  ||||||| || ||| ||||||| | |||||||||  || || || ||||||||||  | ||| | |||||    
T  7002737 cggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttgg--acaatctaaaaat 7002834  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  7002835 tctcacacgcaaatagg 7002851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 7048608 - 7048722
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |  |||||  ||||||| || ||| ||||||| | |||||||||  || || || ||||||||||  | ||| | |||||    
T  7048608 cggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttgg--acaatctaaaaat 7048705  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  7048706 tctcacacgcaaatagg 7048722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 493
Target Start/End: Complemental strand, 8867765 - 8867733
Alignment:
Q  461 aattttatttagcacactattgacgggttcatc 493  Q
    |||||||||||||||||||||||||| ||||||    
T  8867765 aattttatttagcacactattgacggattcatc 8867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 19400103 - 19400135
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    |||||||||||||||||||||||||| ||||||    
T  19400103 atttacctcctaattttatttagcacgctattg 19400135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 331 - 495
Target Start/End: Original strand, 5135291 - 5135455
Alignment:
Q  331 ggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagc 430  Q
    ||||||||| || ||||| |||||||| || ||| | |||||  |||||||||| ||| || ||||||||||||| ||||||  |||||||||||||  |    
T  5135291 ggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaatttggacaaaatccgaaaattctcacacac 5135390  T
Q  431 aaataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5135391 aaataggctaggaaaaaaaatttacctcataattttatttagcacactattgacgggttcatctc 5135455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 39771802 - 39771916
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||||| || |||||||| | |||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||  ||| |||||||    
T  39771802 cggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggc--aatctgaaaat 39771899  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  39771900 tgtcacacgtaaatagg 39771916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 322 - 436
Target Start/End: Complemental strand, 40081893 - 40081782
Alignment:
Q  322 ggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaatt 421  Q
    |||||||||||||||||| |||||||| | |||||| |||||| |||||||  |||||||||||||| || |||||||||||||||  ||||||||||||    
T  40081893 ggtcgcccgggctcgatcgataatttttgaacattagactcaa-ccaaaagctcattaacacatttacaaaaagaaaaatttgggc--aatttgaaaatt 40081797  T
Q  422 ctcacaagcaaatag 436  Q
     ||||| ||||||||    
T  40081796 gtcacacgcaaatag 40081782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 11018367 - 11018253
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||| ||||||||| |||||||| | |||||| |||||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  11018367 cggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 11018270  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  11018269 tctcacacgcaaatagg 11018253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 34084277 - 34084163
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||| ||||||| |||||||| | |||||| | |||| | ||||||||||||||||||||| || |||||||||||||||  ||| |||||||    
T  34084277 cggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggc--aatatgaaaat 34084180  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  34084179 tatcacacgcaaatagg 34084163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 6269581 - 6269467
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| |||| ||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||    
T  6269581 cggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 6269484  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  6269483 tgtcacacgtaaatagg 6269467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 22968599 - 22968511
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    |||||| |||||||||||| |||||||| | |||||| ||| || ||||||| ||||||||||||||| || |||||||||||||||||    
T  22968599 cggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 22968511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 437
Target Start/End: Complemental strand, 6931051 - 6930935
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    ||||||||||||||||||||| |||||||| |  ||||| |  ||| ||||||| | ||||||||||||| || ||||||||||| |||  ||| |||||    
T  6931051 gacggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggc--aatctgaaa 6930954  T
Q  419 attctcacaagcaaatagg 437  Q
    ||||||||| |||||||||    
T  6930953 attctcacacgcaaatagg 6930935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 19390158 - 19390272
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| ||||| |||||| |||||||| | |||||| |||||| | ||||||| ||||||||||||| || |||||||||||||||  ||| |||||||    
T  19390158 cggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 19390255  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  19390256 tgtcacacgtaaatagg 19390272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 45182993 - 45183107
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| |  ||||| || ||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  45182993 cggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 45183090  T
Q  421 tctcacaagcaaatagg 437  Q
    |||||||  ||||||||    
T  45183091 tctcacacacaaatagg 45183107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 323 - 425
Target Start/End: Original strand, 27935192 - 27935292
Alignment:
Q  323 gtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattc 422  Q
    ||||||||||||||||| |||||||| | |||||| || ||| |||||||  |||||||||| ||| || |||||||||||||||  ||| |||||||||    
T  27935192 gtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattc 27935289  T
Q  423 tca 425  Q
    |||    
T  27935290 tca 27935292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 19565656 - 19565542
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||| || ||| |||||||| | |||||| || ||| | |||| |||||||||||||||| || |||||||||||||  | ||| |||||||    
T  19565656 cggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttgg--acaatctgaaaat 19565559  T
Q  421 tctcacaagcaaatagg 437  Q
    ||| ||| |||||||||    
T  19565558 tcttacacgcaaatagg 19565542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 6503724 - 6503610
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| || ||||| | | |||| |||||| ||||||| | |||| |||| ||| || |||||||||||  ||  ||| |||||||    
T  6503724 cggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaaaaagaaaaatttaagc--aatctgaaaat 6503627  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  6503626 tctcacaggcaaatagg 6503610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 51262102 - 51262143
Alignment:
Q  448 acatttacctcctaattttatttagcacactattgacgggtt 489  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  51262102 acatttacctcctaattttatttagcacactattgacaggtt 51262143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 38282483 - 38282563
Alignment:
Q  402 ttgggcaaaatttgaaaattctcacaagcaaataggcttggaaaaga-catttacctcctaattttatttagcacactatt 481  Q
    ||||||||||| | |||||||||||| ||||| |||  | | ||||| |||||||||| ||||||||||||||||||||||    
T  38282483 ttgggcaaaatctaaaaattctcacatgcaaagaggtctcggaaagagcatttacctcataattttatttagcacactatt 38282563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 481
Target Start/End: Original strand, 43585926 - 43585965
Alignment:
Q  442 gaaaagacatttacctcctaattttatttagcacactatt 481  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  43585926 gaaaagacatttacctcctaattttatttagcacgctatt 43585965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 33041086 - 33041120
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  33041086 aattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 45183114 - 45183148
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  45183114 aattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 45335887 - 45336000
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||| ||| ||| ||||||||   |||||| || ||| | ||||||| ||||||||||||| || ||||||||| |||||  ||| |||||||    
T  45335887 cggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtc-attaacacatttacaaaaagaaaaatctgggc--aatctgaaaat 45335983  T
Q  421 tctcacaagcaaatagg 437  Q
    ||| ||| |||||||||    
T  45335984 tcttacacgcaaatagg 45336000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 43137251 - 43137283
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    |||||||||||||||||||||||||||||||||    
T  43137251 atttacctcctaattttatttagcacactattg 43137283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 489
Target Start/End: Original strand, 53710522 - 53710562
Alignment:
Q  449 catttacctcctaattttatttagcacactattgacgggtt 489  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  53710522 catttacctcctaattttatttagcacgctattgacaggtt 53710562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 484
Target Start/End: Complemental strand, 51408660 - 51408625
Alignment:
Q  449 catttacctcctaattttatttagcacactattgac 484  Q
    ||||||||||||||||||||||||||| ||||||||    
T  51408660 catttacctcctaattttatttagcacgctattgac 51408625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 6930928 - 6930894
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||||||||||||||||| |||||||||    
T  6930928 aattttatttagcacactattgacgagttcatctc 6930894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 11018246 - 11018212
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||||||||| |||||||||||||||||    
T  11018246 aattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 22922228 - 22922262
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||| |||||||||||||||||||||||    
T  22922228 aattttatttaacacactattgacgggttcatctc 22922262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 27935311 - 27935345
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||| ||||||||||||||||||||    
T  27935311 aattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 34084156 - 34084122
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    ||||||||||||||||||||||| |||||||||||    
T  34084156 aattttatttagcacactattgatgggttcatctc 34084122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 35514276 - 35514388
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    |||||||| |||||||||||| |||||||||| | | || |  ||| ||||||||||||||||||    | || |||||||||||||  | ||| |||||    
T  35514276 gacggtcgtccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacac----acaaaaagaaaaatttgg--acaatatgaaa 35514369  T
Q  419 attctcacaagcaaatagg 437  Q
    ||||||||  |||||||||    
T  35514370 attctcactcgcaaatagg 35514388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 35514395 - 35514429
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||| ||||||||||||||||||||||||    
T  35514395 aattttattttgcacactattgacgggttcatctc 35514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 33040965 - 33041079
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||| ||||||||||  |||||||| | | |||| || ||| |||||||   ||||||||| ||| || |||||||||||  | | |||||||||||    
T  33040965 cggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaattt--gaacaatttgaaaat 33041062  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  33041063 tttcacacgcaaatagg 33041079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 495
Target Start/End: Complemental strand, 40081774 - 40081741
Alignment:
Q  462 attttatttagcacactattgacgggttcatctc 495  Q
    ||||| ||||||||||||||||||||||||||||    
T  40081774 attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 3856926 - 3856894
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||| |||||    
T  3856926 atttacctcctaattttatttagcacattattg 3856894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 9743393 - 9743425
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    ||||||||| |||||||||||||||||||||||    
T  9743393 atttacctcgtaattttatttagcacactattg 9743425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 37381928 - 37381880
Alignment:
Q  441 ggaaaagacatttacctcctaattttatttagcacactattgacgggtt 489  Q
    ||||| ||||||| ||||||||||||||| ||||| |||||||| ||||    
T  37381928 ggaaatgacatttgcctcctaattttattcagcacgctattgacaggtt 37381880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 333 - 495
Target Start/End: Complemental strand, 4555354 - 4555192
Alignment:
Q  333 ctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcacaagcaa 432  Q
    ||||||| |||||||| | |||| | || ||| |||||||  | |||||||| ||| || ||||||| |||||||||||| |||||||||||||| | ||    
T  4555354 ctcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggcaaaatctgaaaattctcacacgtaa 4555255  T
Q  433 ataggcttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    ||||||| | |||||||||||||||  |||||||||||| ||||||||||||| |||||||||    
T  4555254 ataggctcgaaaaagacatttaccttttaattttatttaccacactattgacgagttcatctc 4555192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 321 - 495
Target Start/End: Complemental strand, 7072707 - 7072531
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaa--cacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    ||||||||||||||||||| ||||||||  ||||||| |||||| ||||||| |||||||  |||| |||||| |||||||  |||| |||| | |||||    
T  7072707 cggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacacacacttataaaaagaaaatattggacaaattctgaaa 7072608  T
Q  419 attctcacaagcaaataggcttgg-aaaagacatttacctcctaattttatttagcacactattgacgggttcatctc 495  Q
    |||||| || | ||||||||| || |||| |||| |||||||||||||||||||| |||| |||||||||||||||||    
T  7072607 attctcgcacgtaaataggctcggaaaaaaacatctacctcctaattttatttagtacac-attgacgggttcatctc 7072531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 6403959 - 6403845
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | |||||| ||||||||||||||||| |||||||||||||||  ||| |||||||    
T  6403959 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggc--aatctgaaaat 6403862  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  6403861 tgtcacacgtaaatagg 6403845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 41251789 - 41251675
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||    
T  41251789 cggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 41251692  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  41251691 tgtcacacgtaaatagg 41251675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 42439998 - 42440112
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| ||| || ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||    
T  42439998 cggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 42440095  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  42440096 tgtcacacgcaaatagg 42440112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 18981628 - 18981742
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| |||||||||||  |||||||| | |||||| |||||| ||||||||||||||| ||||||| || |||||||||||||||  ||||| |||||    
T  18981628 cggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaagaaaaatttgggc--aatttaaaaat 18981725  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  18981726 tgtcacacgcaaatagg 18981742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 436
Target Start/End: Complemental strand, 32127296 - 32127183
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||||||||||||||||| | |||||| |||| | |||||||  |||||||||||||| || ||||||||||| |||  ||| |||||||    
T  32127296 cggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaatttaggc--aatctgaaaat 32127199  T
Q  421 tctcacaagcaaatag 436  Q
    | ||||| ||||||||    
T  32127198 tgtcacacgcaaatag 32127183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 323 - 437
Target Start/End: Complemental strand, 44084756 - 44084644
Alignment:
Q  323 gtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattc 422  Q
    ||||||||||||||||| |||||||| | |||||| || ||| |||||||| |||||||||| ||| || |||||||||||||||  ||| |||||||||    
T  44084756 gtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggc--aatctgaaaattc 44084659  T
Q  423 tcacaagcaaatagg 437  Q
    ||| | |||||||||    
T  44084658 tcatacgcaaatagg 44084644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 771011 - 771125
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||| ||| | |||||| || ||| | ||||| ||||||||||| ||| || |||||||||||||||  ||| |||||||    
T  771011 cggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 771108  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  771109 tctcacacgcaaatagg 771125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 435
Target Start/End: Original strand, 16405612 - 16405724
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||| ||| |||||||| | || ||| |||||| |||||||  ||||||||||||||||| |||||||||||||  | ||| |||||||    
T  16405612 cggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaaaagaaaaatttgg--acaatctgaaaat 16405709  T
Q  421 tctcacaagcaaata 435  Q
    | ||||| |||||||    
T  16405710 tgtcacacgcaaata 16405724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 2958255 - 2958142
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| |||||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| ||  |||||||||||||   ||| |||||||    
T  2958255 cggtcgtccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaagagaaaaatttggg--taatctgaaaat 2958159  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  2958158 tgtcacacgcaaatagg 2958142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 492
Target Start/End: Original strand, 45121302 - 45121399
Alignment:
Q  396 aaaaatttgggcaaaatttgaaaattctcacaagcaaatagg-cttggaaaagacatttacctcctaattttatttagcacactattgacgggttcat 492  Q
    ||||| ||| || |||| ||||||||| |||| ||||| ||| || |||||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  45121302 aaaaaattgagcgaaatctgaaaattcccacacgcaaagaggtctcggaaaagacatttacctcctaattttatttagaacactattggcaggttcat 45121399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 45418595 - 45418709
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| |  ||||| |  ||| ||||||| | ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  45418595 cggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 45418692  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  45418693 tctcacacgcaaatagg 45418709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 17445194 - 17445082
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||| |||||||| |||||||| | ||  || |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||    
T  17445194 cggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 17445099  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  17445098 tgtcacacgtaaatagg 17445082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 436
Target Start/End: Original strand, 8147363 - 8147477
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttg-aaaa 419  Q
    ||||||||||||||||||| ||||| || | |||||| || |||  |||||||| ||||||||| ||| || |||||||||||||||  ||| || ||||    
T  8147363 cggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaaa 8147460  T
Q  420 ttctcacaagcaaatag 436  Q
    |||||||| ||||||||    
T  8147461 ttctcacacgcaaatag 8147477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 26237969 - 26238057
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaa 410  Q
    ||||||||||||||||||| ||| |||| | | |||| |  ||||||||||||||||||||||| ||| || ||||||||||||||||||    
T  26237969 cggtcgcccgggctcgatcgatattttt-gcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaatttgggcaaa 26238057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 31581777 - 31581663
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||| ||||||| | ||| |||| | | |||| |||||  ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||    
T  31581777 cggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaat 31581680  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| |||||||||    
T  31581679 tgtcacacgcaaatagg 31581663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 35962727 - 35962841
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||| |||||||||||| |||||||| | |||||| |||||| |||||||   ||||||||||||| || ||||||| |||||||  ||| |||||||    
T  35962727 cggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaagaaaattttgggc--aatctgaaaat 35962824  T
Q  421 tctcacaagcaaatagg 437  Q
    | |||||  ||||||||    
T  35962825 tgtcacacacaaatagg 35962841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 12539686 - 12539732
Alignment:
Q  438 cttggaaaagacatttacctcctaattttatttagcacactattgac 484  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||    
T  12539686 cttggaaagaacatttacctcctaattttatttagcacactattgac 12539732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 427
Target Start/End: Complemental strand, 8059485 - 8059384
Alignment:
Q  324 tcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattct 423  Q
    |||||| ||||| ||| |||||||| | |||||| | |||| ||||||| | ||||||||| ||| || ||||||||||||| |  ||||||||||||||    
T  8059485 tcgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggcc--aatttgaaaattct 8059388  T
Q  424 caca 427  Q
    ||||    
T  8059387 caca 8059384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 12756871 - 12756837
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  12756871 aattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 31581656 - 31581622
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  31581656 aattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 44084637 - 44084603
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  44084637 aattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 45418716 - 45418750
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  45418716 aattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 12756986 - 12756880
Alignment:
Q  327 cccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcac 426  Q
    |||||| |||||| |||||||| |  ||||| || ||| ||||||| | ||||||||| ||| || |||||||||||| ||  ||| |||||||||||||    
T  12756986 cccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagc--aatctgaaaattctcac 12756889  T
Q  427 aagcaaata 435  Q
    | |||||||    
T  12756888 acgcaaata 12756880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 483
Target Start/End: Complemental strand, 7886706 - 7886675
Alignment:
Q  452 ttacctcctaattttatttagcacactattga 483  Q
    ||||||||||||||||||||||||||||||||    
T  7886706 ttacctcctaattttatttagcacactattga 7886675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 16405733 - 16405764
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  16405733 aattttatttagcacactattgacgggttcat 16405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Complemental strand, 32127175 - 32127144
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  32127175 aattttatttagcacactattgacgggttcat 32127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 35962848 - 35962879
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  35962848 aattttatttagcacactattgacgggttcat 35962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 465 - 495
Target Start/End: Original strand, 26238080 - 26238110
Alignment:
Q  465 ttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||    
T  26238080 ttatttagcacactattgacgggttcatctc 26238110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 494
Target Start/End: Original strand, 8147485 - 8147518
Alignment:
Q  461 aattttatttagcacactattgacgggttcatct 494  Q
    ||||||||||| ||||||||||||||||||||||    
T  8147485 aattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 31392927 - 31392960
Alignment:
Q  456 ctcctaattttatttagcacactattgacgggtt 489  Q
    ||||||||||||||||||||||||||||| ||||    
T  31392927 ctcctaattttatttagcacactattgacaggtt 31392960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 33453239 - 33453206
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    |||||||||||||||||||||||||| |||||||    
T  33453239 catttacctcctaattttatttagcagactattg 33453206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 34317524 - 34317491
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||| ||||||||||||||    
T  34317524 catttacctcctaattttaattagcacactattg 34317491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 19951882 - 19951842
Alignment:
Q  449 catttacctcctaattttatttagcacactattgacgggtt 489  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  19951882 catttaccttctaatttaatttagcacactattgacaggtt 19951842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 481
Target Start/End: Complemental strand, 26656392 - 26656360
Alignment:
Q  449 catttacctcctaattttatttagcacactatt 481  Q
    |||||||||||||||||||||| ||||||||||    
T  26656392 catttacctcctaattttatttcgcacactatt 26656360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 534 - 648
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | |||||  ||||||||||||||||| |||||||||||||||  |||||||||||    
T  534 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggc--aatttgaaaat 631  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  632 tgtcacacgtaaatagg 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 480612 - 480498
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | |||||  ||||||||||||||||| |||||||||||||||  |||||||||||    
T  480612 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggc--aatttgaaaat 480515  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  480514 tgtcacacgtaaatagg 480498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 482
Target Start/End: Complemental strand, 435401 - 435366
Alignment:
Q  447 gacatttacctcctaattttatttagcacactattg 482  Q
    ||||||||||||||||||||||||||||||||||||    
T  435401 gacatttacctcctaattttatttagcacactattg 435366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 398629 - 398743
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    ||||||||||||||||||| |||||||| | |||||| |||||| | |||||  ||||||||||||||||| |||||||||||||||  |||||||||||    
T  398629 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggc--aatttgaaaat 398726  T
Q  421 tctcacaagcaaatagg 437  Q
    | ||||| | |||||||    
T  398727 tgtcacacgtaaatagg 398743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 34948913 - 34948825
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    ||||||||| ||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||||    
T  34948913 cggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 34948825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 18339118 - 18339232
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||||||||||||||||| | |||||| || ||| | ||||| | ||||||||| ||| || ||||||| |||||||  ||| |||||||    
T  18339118 cggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggc--aatctgaaaat 18339215  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  18339216 tctcacatgcaaatagg 18339232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 33229487 - 33229403
Alignment:
Q  325 cgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaa 409  Q
    ||||||||||||||| || ||||| |||||||| || ||| ||||||||||||||||||||||  || |||||||||||||||||    
T  33229487 cgcccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaa 33229403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 13837836 - 13837947
Alignment:
Q  324 tcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattct 423  Q
    |||| |||| |||||| |||||||| |||||||| |||||| |||||||  ||| |||||||||| || |||||||||||||||  ||| |||||||| |    
T  13837836 tcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaagaaaaatttgggc--aatctgaaaattgt 13837933  T
Q  424 cacaagcaaatagg 437  Q
    |||| |||||||||    
T  13837934 cacacgcaaatagg 13837947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 28996742 - 28996856
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||| |||||||| |||||||| |  ||||| || ||| | ||||||| ||||||||| ||| || |||||||||||||||  ||| |||||||    
T  28996742 cggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggc--aatctgaaaat 28996839  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  28996840 tctcacacgcaaatagg 28996856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 29743295 - 29743409
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||| |||||||||| ||| |||||||| | |||||| || ||| | |||||| |||||||||||||| |  |||||||||||||||  ||| |||||||    
T  29743295 cggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggc--aatctgaaaat 29743392  T
Q  421 tctcacaagcaaatagg 437  Q
    ||| ||| |||||||||    
T  29743393 tcttacacgcaaatagg 29743409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 489
Target Start/End: Original strand, 11971083 - 11971123
Alignment:
Q  449 catttacctcctaattttatttagcacactattgacgggtt 489  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  11971083 catttacctcctaattttatttagcacactattgacaggtt 11971123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 18339239 - 18339273
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  18339239 aattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 28996863 - 28996897
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  28996863 aattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 484
Target Start/End: Original strand, 3050987 - 3051022
Alignment:
Q  449 catttacctcctaattttatttagcacactattgac 484  Q
    |||||||| |||||||||||||||||||||||||||    
T  3050987 catttaccacctaattttatttagcacactattgac 3051022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 13837954 - 13837985
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  13837954 aattttatttagcacactattgacgggttcat 13837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Complemental strand, 34948792 - 34948761
Alignment:
Q  461 aattttatttagcacactattgacgggttcat 492  Q
    ||||||||||||||||||||||||||||||||    
T  34948792 aattttatttagcacactattgacgggttcat 34948761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 12180576 - 12180536
Alignment:
Q  449 catttacctcctaattttatttagcacactattgacgggtt 489  Q
    ||||||||| |||||||||||||||||| ||||||| ||||    
T  12180576 catttaccttctaattttatttagcacattattgacaggtt 12180536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 475
Target Start/End: Original strand, 24074534 - 24074562
Alignment:
Q  447 gacatttacctcctaattttatttagcac 475  Q
    |||||||||||||||||||||||||||||    
T  24074534 gacatttacctcctaattttatttagcac 24074562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 30621288 - 30621324
Alignment:
Q  441 ggaaaagacatttacctcctaattttatttagcacac 477  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  30621288 ggaaaggacatttacctcctaattttatttaacacac 30621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 437
Target Start/End: Original strand, 17861 - 17968
Alignment:
Q  328 ccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcaca 427  Q
    |||||||||||| |||||||| | |||||| |||||| ||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||| |||||    
T  17861 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaattgtcaca 17958  T
Q  428 agcaaatagg 437  Q
     | |||||||    
T  17959 tgtaaatagg 17968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 5242 - 5356
Alignment:
Q  321 cggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaat 420  Q
    |||||||||||||||||||||||||||| | |||||| || ||| | ||||| | ||||||||| ||| || ||||||| |||||||  ||| |||||||    
T  5242 cggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggc--aatctgaaaat 5339  T
Q  421 tctcacaagcaaatagg 437  Q
    ||||||| |||||||||    
T  5340 tctcacatgcaaatagg 5356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 5363 - 5397
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  5363 aattttatttagcacactattgacgggttcatctc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 31490 - 31606
Alignment:
Q  319 gacggtcgcccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaa 418  Q
    ||||||||||||||||||||| |||||||| | ||| || || ||| ||||||| ||||||||||| ||| || |||||||||||||  | ||| |||||    
T  31490 gacggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgg--acaatctgaaa 31587  T
Q  419 attctcacaagcaaatagg 437  Q
    ||||||||  |||||||||    
T  31588 attctcactcgcaaatagg 31606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 437
Target Start/End: Original strand, 52944 - 53051
Alignment:
Q  328 ccgggctcgatcaataattttcgtacattatactcaaaccaaaagtccattaacacatttataataagaaaaatttgggcaaaatttgaaaattctcaca 427  Q
    |||||||||||| |||||||| | |||||| | | || ||||||| | ||||||||||||| || |||||||||||||  | ||| ||||||||||||||    
T  52944 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttgg--acaatctgaaaattctcaca 53041  T
Q  428 agcaaatagg 437  Q
     |||||||||    
T  53042 tgcaaatagg 53051  T

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Target: scaffold0041; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 53058 - 53092
Alignment:
Q  461 aattttatttagcacactattgacgggttcatctc 495  Q
    |||||||||||||||||||||||||||||||||||    
T  53058 aattttatttagcacactattgacgggttcatctc 53092  T

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Target: scaffold0178 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 484
Target Start/End: Original strand, 17857 - 17899
Alignment:
Q  442 gaaaagacatttacctcctaattttatttagcacactattgac 484  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  17857 gaaaggacatttaactcctaattttatttagcacactattgac 17899  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 449 - 483
Target Start/End: Complemental strand, 134905 - 134871
Alignment:
Q  449 catttacctcctaattttatttagcacactattga 483  Q
    ||||||||||||||||||||||||||| |||||||    
T  134905 catttacctcctaattttatttagcacgctattga 134871  T

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Target: scaffold0726 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 1007 - 1040
Alignment:
Q  449 catttacctcctaattttatttagcacactattg 482  Q
    |||||| |||||||||||||||||||||||||||    
T  1007 catttatctcctaattttatttagcacactattg 1040  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 214211 - 214179
Alignment:
Q  450 atttacctcctaattttatttagcacactattg 482  Q
    |||||||||||||||||||||||||| ||||||    
T  214211 atttacctcctaattttatttagcacgctattg 214179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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