View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6135_low_3 (Length: 561)

Name: NF6135_low_3
Description: NF6135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6135_low_3
NF6135_low_3
[»] chr2 (32 HSPs)
chr2 (4-558)||(2828106-2828661)
chr2 (1-82)||(2893962-2894043)
chr2 (1-82)||(14229411-14229491)
chr2 (1-75)||(6217282-6217356)
chr2 (1-69)||(38933599-38933667)
chr2 (1-75)||(29925628-29925702)
chr2 (19-79)||(14464557-14464617)
chr2 (19-75)||(15011356-15011412)
chr2 (14-73)||(2143943-2144002)
chr2 (1-55)||(6721977-6722031)
chr2 (1-55)||(29508749-29508803)
chr2 (1-75)||(37961712-37961786)
chr2 (1-51)||(14470650-14470700)
chr2 (1-55)||(15011306-15011360)
chr2 (1-55)||(16514450-16514504)
chr2 (22-62)||(2828663-2828703)
chr2 (19-69)||(2894039-2894089)
chr2 (1-55)||(37762059-37762113)
chr2 (45-79)||(14470585-14470619)
chr2 (1-51)||(24115950-24116000)
chr2 (19-69)||(37762013-37762063)
chr2 (45-83)||(38933698-38933736)
chr2 (18-83)||(565308-565372)
chr2 (6-55)||(9173044-9173093)
chr2 (19-55)||(6217250-6217286)
chr2 (27-83)||(7755334-7755390)
chr2 (19-55)||(14229379-14229415)
chr2 (19-82)||(16514500-16514572)
chr2 (46-76)||(45213912-45213942)
chr2 (29-58)||(1992263-1992292)
chr2 (22-55)||(32545867-32545900)
chr2 (19-55)||(33018621-33018657)
[»] chr6 (19 HSPs)
chr6 (1-82)||(31654304-31654385)
chr6 (4-88)||(24618662-24618746)
chr6 (1-75)||(12343106-12343180)
chr6 (4-69)||(10521910-10521975)
chr6 (1-55)||(551223-551277)
chr6 (22-79)||(10521851-10521908)
chr6 (1-82)||(2315362-2315443)
chr6 (1-79)||(17750896-17750982)
chr6 (1-54)||(24587488-24587541)
chr6 (19-82)||(551164-551227)
chr6 (19-55)||(12343176-12343212)
chr6 (1-49)||(13043489-13043537)
chr6 (19-82)||(17750978-17751050)
chr6 (45-82)||(24618591-24618628)
chr6 (19-79)||(2315306-2315366)
chr6 (45-82)||(6299164-6299202)
chr6 (45-82)||(6305974-6306012)
chr6 (19-55)||(13043533-13043569)
chr6 (19-55)||(24975778-24975814)
[»] chr8 (30 HSPs)
chr8 (1-83)||(6296603-6296685)
chr8 (1-64)||(39850972-39851035)
chr8 (19-81)||(34229717-34229779)
chr8 (1-55)||(35441027-35441081)
chr8 (19-83)||(34541801-34541865)
chr8 (1-83)||(5667086-5667177)
chr8 (1-55)||(5033187-5033241)
chr8 (1-53)||(4958627-4958679)
chr8 (19-82)||(8243387-8243450)
chr8 (1-79)||(34229634-34229721)
chr8 (1-55)||(8243446-8243500)
chr8 (1-55)||(33841649-33841703)
chr8 (1-54)||(8796449-8796502)
chr8 (1-54)||(10086784-10086837)
chr8 (1-69)||(34541861-34541929)
chr8 (11-53)||(2581853-2581895)
chr8 (19-83)||(5033237-5033310)
chr8 (8-43)||(43844534-43844569)
chr8 (4-55)||(45191188-45191239)
chr8 (28-82)||(1880323-1880376)
chr8 (45-83)||(33841580-33841618)
chr8 (20-74)||(37618735-37618788)
chr8 (19-83)||(35440958-35441031)
chr8 (20-81)||(39139838-39139899)
chr8 (22-69)||(36766176-36766223)
chr8 (18-55)||(22649871-22649908)
chr8 (19-55)||(5667173-5667209)
chr8 (19-55)||(8796498-8796534)
chr8 (19-55)||(10086833-10086869)
chr8 (19-55)||(31159927-31159963)
[»] chr5 (36 HSPs)
chr5 (1-75)||(3899845-3899919)
chr5 (1-82)||(26662398-26662479)
chr5 (1-82)||(26933993-26934074)
chr5 (1-82)||(28818916-28818997)
chr5 (1-75)||(16971150-16971224)
chr5 (3-78)||(38134433-38134508)
chr5 (1-55)||(16439164-16439218)
chr5 (1-55)||(29699393-29699447)
chr5 (19-82)||(3180059-3180122)
chr5 (1-55)||(3180118-3180172)
chr5 (1-55)||(12913829-12913883)
chr5 (19-73)||(16439214-16439268)
chr5 (1-83)||(16802442-16802524)
chr5 (1-55)||(19655184-19655238)
chr5 (19-83)||(6912295-6912359)
chr5 (1-55)||(291123-291177)
chr5 (1-55)||(19598358-19598412)
chr5 (1-68)||(2093995-2094062)
chr5 (10-79)||(2356277-2356345)
chr5 (1-75)||(2953204-2953270)
chr5 (19-83)||(16971220-16971293)
chr5 (19-82)||(2953266-2953338)
chr5 (19-55)||(29699443-29699479)
chr5 (20-79)||(16802521-16802580)
chr5 (19-82)||(19598408-19598470)
chr5 (45-83)||(2356382-2356420)
chr5 (19-55)||(3899915-3899951)
chr5 (19-55)||(19655234-19655270)
chr5 (4-55)||(30117889-30117940)
chr5 (45-82)||(291208-291245)
chr5 (17-54)||(1638484-1638521)
chr5 (45-82)||(2093927-2093964)
chr5 (35-76)||(6912355-6912396)
chr5 (45-81)||(3899950-3899986)
chr5 (45-73)||(12913914-12913942)
chr5 (19-55)||(28818993-28819029)
[»] chr3 (37 HSPs)
chr3 (1-79)||(47677313-47677391)
chr3 (1-79)||(29031772-29031850)
chr3 (19-82)||(33689252-33689315)
chr3 (1-63)||(1801504-1801566)
chr3 (1-82)||(30476532-30476613)
chr3 (1-68)||(39385746-39385813)
chr3 (14-75)||(1801566-1801627)
chr3 (25-82)||(49414505-49414562)
chr3 (19-79)||(30476476-30476536)
chr3 (1-76)||(33689172-33689256)
chr3 (19-82)||(43139708-43139771)
chr3 (1-55)||(43139767-43139821)
chr3 (1-55)||(51046131-51046185)
chr3 (19-76)||(47677260-47677317)
chr3 (1-49)||(47492105-47492153)
chr3 (17-79)||(1272495-1272557)
chr3 (1-55)||(30734460-30734514)
chr3 (1-55)||(41752990-41753044)
chr3 (1-55)||(50550001-50550055)
chr3 (1-54)||(30580814-30580867)
chr3 (1-53)||(50524730-50524782)
chr3 (30-81)||(49418691-49418742)
chr3 (19-68)||(18321727-18321776)
chr3 (19-68)||(29031727-29031776)
chr3 (1-58)||(49418749-49418806)
chr3 (19-55)||(47492073-47492109)
chr3 (19-79)||(55223308-55223368)
chr3 (45-82)||(1272560-1272597)
chr3 (2-55)||(18321677-18321730)
chr3 (45-82)||(45103099-45103136)
chr3 (19-55)||(1801472-1801508)
chr3 (19-55)||(41753040-41753076)
chr3 (28-82)||(11512386-11512440)
chr3 (6-36)||(30904289-30904319)
chr3 (45-79)||(55223225-55223259)
chr3 (45-82)||(1801436-1801473)
chr3 (26-58)||(27729289-27729321)
[»] scaffold0047 (2 HSPs)
scaffold0047 (1-75)||(63763-63837)
scaffold0047 (19-69)||(63833-63883)
[»] chr7 (36 HSPs)
chr7 (1-75)||(29053372-29053446)
chr7 (1-69)||(42628307-42628375)
chr7 (19-83)||(41018226-41018290)
chr7 (1-55)||(11016895-11016949)
chr7 (8-69)||(4649332-4649393)
chr7 (1-57)||(7671969-7672025)
chr7 (1-55)||(22764758-22764812)
chr7 (19-81)||(34854695-34854757)
chr7 (1-55)||(45231908-45231962)
chr7 (22-79)||(27028795-27028852)
chr7 (4-55)||(27028854-27028905)
chr7 (1-51)||(38975835-38975885)
chr7 (1-55)||(41018286-41018340)
chr7 (19-78)||(4649398-4649457)
chr7 (19-82)||(29053313-29053376)
chr7 (2-49)||(48000769-48000816)
chr7 (1-55)||(4290571-4290625)
chr7 (1-55)||(15027568-15027622)
chr7 (25-75)||(30165329-30165379)
chr7 (1-55)||(34854753-34854807)
chr7 (1-54)||(10419485-10419538)
chr7 (14-55)||(27028754-27028795)
chr7 (33-82)||(45231853-45231902)
chr7 (45-83)||(11016980-11017018)
chr7 (45-82)||(42628406-42628443)
chr7 (19-55)||(4290621-4290657)
chr7 (19-55)||(15027618-15027654)
chr7 (1-53)||(30217512-30217564)
chr7 (19-58)||(7671934-7671973)
chr7 (27-82)||(10419542-10419597)
chr7 (45-83)||(4290656-4290694)
chr7 (27-85)||(11271507-11271565)
chr7 (29-79)||(25001349-25001399)
chr7 (28-81)||(7211860-7211913)
chr7 (28-81)||(17272699-17272752)
chr7 (26-79)||(32315709-32315762)
[»] chr4 (48 HSPs)
chr4 (1-75)||(42375016-42375090)
chr4 (19-83)||(50384103-50384167)
chr4 (1-68)||(40789192-40789259)
chr4 (1-76)||(52028554-52028629)
chr4 (1-76)||(55090054-55090129)
chr4 (1-75)||(47404643-47404717)
chr4 (19-83)||(47404583-47404647)
chr4 (1-75)||(53954616-53954690)
chr4 (22-83)||(31430459-31430520)
chr4 (19-83)||(40789255-40789319)
chr4 (19-82)||(24006069-24006132)
chr4 (1-55)||(6271728-6271782)
chr4 (1-55)||(23444327-23444381)
chr4 (1-55)||(30861832-30861886)
chr4 (1-55)||(47661868-47661922)
chr4 (1-55)||(51265471-51265525)
chr4 (19-76)||(55090001-55090058)
chr4 (19-67)||(52028625-52028673)
chr4 (1-55)||(35682192-35682246)
chr4 (4-75)||(31430522-31430590)
chr4 (32-79)||(24006151-24006198)
chr4 (10-53)||(26186081-26186124)
chr4 (23-82)||(55089876-55089935)
chr4 (19-76)||(45591415-45591472)
chr4 (1-54)||(47762635-47762688)
chr4 (19-55)||(6271778-6271814)
chr4 (19-79)||(28693925-28693985)
chr4 (1-69)||(38714835-38714903)
chr4 (16-55)||(3862619-3862658)
chr4 (16-55)||(3871376-3871415)
chr4 (27-82)||(9712845-9712900)
chr4 (19-58)||(26186039-26186078)
chr4 (6-55)||(31532752-31532801)
chr4 (45-82)||(42375121-42375158)
chr4 (45-82)||(53954721-53954758)
chr4 (19-55)||(23444295-23444331)
chr4 (19-82)||(47661918-47661990)
chr4 (1-32)||(50384163-50384194)
chr4 (20-58)||(17285807-17285845)
chr4 (46-76)||(25617977-25618007)
chr4 (10-52)||(44379959-44380001)
chr4 (45-82)||(51265556-51265593)
chr4 (35-79)||(19184551-19184595)
chr4 (51-83)||(34176246-34176278)
chr4 (19-55)||(35682242-35682278)
chr4 (44-84)||(44379918-44379958)
chr4 (19-55)||(51265521-51265557)
chr4 (34-82)||(54716348-54716396)
[»] chr1 (63 HSPs)
chr1 (1-79)||(29371370-29371448)
chr1 (1-69)||(34062221-34062289)
chr1 (8-75)||(49444976-49445043)
chr1 (1-75)||(8337909-8337983)
chr1 (1-79)||(15220813-15220891)
chr1 (1-75)||(46334004-46334078)
chr1 (21-82)||(48823884-48823945)
chr1 (19-83)||(46333944-46334008)
chr1 (1-55)||(37155072-37155126)
chr1 (19-75)||(4609072-4609128)
chr1 (10-69)||(38674570-38674629)
chr1 (1-80)||(47303396-47303475)
chr1 (19-81)||(28928779-28928841)
chr1 (1-55)||(29179655-29179709)
chr1 (1-58)||(741560-741617)
chr1 (5-76)||(9157306-9157386)
chr1 (1-51)||(5995399-5995449)
chr1 (5-55)||(21630068-21630118)
chr1 (1-55)||(32540806-32540860)
chr1 (1-55)||(44706842-44706896)
chr1 (1-55)||(48993975-48994029)
chr1 (1-54)||(17127622-17127675)
chr1 (19-83)||(741500-741564)
chr1 (19-79)||(1819491-1819551)
chr1 (19-75)||(38674511-38674567)
chr1 (19-82)||(34062285-34062348)
chr1 (1-60)||(48605005-48605064)
chr1 (1-55)||(1091602-1091656)
chr1 (1-55)||(4609022-4609076)
chr1 (21-79)||(9157388-9157446)
chr1 (1-75)||(33219579-33219653)
chr1 (19-76)||(37155122-37155180)
chr1 (1-55)||(45728313-45728367)
chr1 (19-73)||(47303471-47303525)
chr1 (1-58)||(5694947-5695004)
chr1 (10-55)||(28395663-28395708)
chr1 (1-75)||(36290465-36290548)
chr1 (19-82)||(48498491-48498553)
chr1 (19-69)||(19711192-19711242)
chr1 (20-68)||(32157602-32157650)
chr1 (19-82)||(48993907-48993979)
chr1 (27-82)||(4579168-4579222)
chr1 (33-68)||(36290428-36290463)
chr1 (19-80)||(8337853-8337913)
chr1 (1-79)||(28928837-28928907)
chr1 (19-83)||(29179586-29179659)
chr1 (1-54)||(48498442-48498495)
chr1 (26-83)||(48604945-48605002)
chr1 (45-82)||(49444903-49444940)
chr1 (34-82)||(4579263-4579310)
chr1 (19-55)||(32540774-32540810)
chr1 (19-54)||(17127591-17127626)
chr1 (34-76)||(5694895-5694937)
chr1 (28-82)||(28739418-28739472)
chr1 (17-55)||(46932023-46932061)
chr1 (19-76)||(2573160-2573217)
chr1 (45-82)||(15220922-15220959)
chr1 (19-79)||(29371444-29371513)
chr1 (29-58)||(44183417-44183446)
chr1 (46-83)||(44183438-44183475)
chr1 (19-55)||(5995445-5995481)
chr1 (19-55)||(15220887-15220923)
chr1 (19-58)||(44706806-44706846)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-69)||(49761-49829)
scaffold0016 (19-83)||(49692-49765)
[»] scaffold0586 (2 HSPs)
scaffold0586 (1-55)||(7105-7159)
scaffold0586 (19-71)||(7048-7109)
[»] scaffold1033 (2 HSPs)
scaffold1033 (19-79)||(2289-2349)
scaffold1033 (1-29)||(2265-2293)
[»] scaffold1029 (2 HSPs)
scaffold1029 (19-79)||(2289-2349)
scaffold1029 (1-29)||(2265-2293)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1-55)||(27278-27332)
[»] scaffold0481 (1 HSPs)
scaffold0481 (19-69)||(2899-2949)
[»] scaffold0180 (1 HSPs)
scaffold0180 (46-79)||(19115-19148)


Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 4 - 558
Target Start/End: Complemental strand, 2828661 - 2828106
Alignment:
Q  4 tgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccgcattttagagggtcggtgct 103  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2828661 tgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacccaactctatgtcacagaagtgctacccgcattttagagggtcggtgct 2828562  T
Q  104 acgcaacgctatctcagattaacaacatggcttggcatattgtagtatgagagttacagcctctttcaactgtgatcatttagtttttcacataacttac 203  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  2828561 acgcaacgctatctcagattaacaacatggcttggcatgttgtagtatgagagttacaacctctttctactttgatcatttagtttttcacataacttac 2828462  T
Q  204 aaatagttcctgttgagatgtcctttactnnnnnnnnnttgatttaggagactcttaagccgtttaagccgttatcccatatgctgcaacacgtatttca 303  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2828461 aaatagttcctgttgagatgtcctttactaaaaaaaaattgatttaggagactcttaagccgtttaagccgttatcccatatgctgcaacatgtatttca 2828362  T
Q  304 tatagatttaagttccaaattttcaaacggttacatacttttcttatgatatcgctatt-atagttagatagaaatattggaagcacagaattattctga 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||    
T  2828361 tatagatttaagttccaaattttcaaacggttacatacttttcttatgatatctctatttatagttagatagaaatattggaagcacagaattattccga 2828262  T
Q  403 tacatgcttaaattcaaatcttacatttacatacaccgattatttgtttcatttcagaatccttgtgattttcctatgagccacaaccagtcaagagcat 502  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828261 tacatgcttaaattaaaatcttacatttacatacaccgattatttgtttcatttcagaatccttgtgattttcctatgagccacaaccagtcaagagcat 2828162  T
Q  503 ccccaacaaatatgccacacataagaaacaacacaagaatattacctagtgcattc 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828161 ccccaacaaatatgccacacataagaaacaacacaagaatattacctagtgcattc 2828106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 2894043 - 2893962
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  2894043 ttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcacccaactctatgtcacccaagtgttaccc 2893962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14229411 - 14229491
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||    
T  14229411 ttgtgaaagagagagaaacacaagcattgtgacattgtgatt-gccaatgtcatccaactctatgtcacccaagtgctaccc 14229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6217282 - 6217356
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  6217282 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 6217356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38933667 - 38933599
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  38933667 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacccaactctatgtcac 38933599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29925628 - 29925702
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||    
T  29925628 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgttacccaagt 29925702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14464617 - 14464557
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  14464617 cacaagtattgtgacattgtgattgaccaatgtcactcaactctatgtcacacaagtgcta 14464557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 15011356 - 15011412
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  15011356 cacaagcattgtgacattgtgattggccaatgtcactcaactctatgtcacccaagt 15011412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 2143943 - 2144002
Alignment:
Q  14 agaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaa 73  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||    
T  2143943 agaaacacaagcattatgacattgtgattggccaacgtcactcaactctatgtcacacaa 2144002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6722031 - 6721977
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6722031 ttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcacc 6721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29508749 - 29508803
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  29508749 ttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 29508803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37961786 - 37961712
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||| |||| || ||||||||| || |||||||||||||||||||| ||| |||||    
T  37961786 ttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgtcacccaactctatgccacccaagt 37961712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14470650 - 14470700
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgt 51  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  14470650 ttgtgaaagagagagaaacacaaacattgtgacattgtgattggctaatgt 14470700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 15011360 - 15011306
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  15011360 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcacc 15011306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16514504 - 16514450
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  16514504 ttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcacc 16514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 2828663 - 2828703
Alignment:
Q  22 aagcattgtgacattgtgattggccaatgtcacccaactct 62  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2828663 aagcattgtgacattgtgattggccaatgtcacccaactct 2828703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 2894039 - 2894089
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||||||||    
T  2894039 cacaagcattgtgacactgtgattgaccaatgtcatccaactctatgtcac 2894089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37762059 - 37762113
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||| ||||||||||||||||||| |||||||||| || ||||||||    
T  37762059 ttgtgaaagagaaagaaacacaagcattgtgatattgtgattgacccatgtcacc 37762113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 14470619 - 14470585
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||||||||||||||    
T  14470619 ccaatgtcacccaactctatgtcacacaagtgcta 14470585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24116000 - 24115950
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgt 51  Q
    ||||||||||| | |||||||| ||||||| ||||||||||||||||||||    
T  24116000 ttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggccaatgt 24115950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 37762063 - 37762013
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||| |||||    
T  37762063 cacaagcattgcgacattgtgattggtcaatgtcactcaactctacgtcac 37762013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 38933698 - 38933736
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  38933698 ccaatgtcacccaactctatgtcacccaagtgctacccg 38933736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 565372 - 565308
Alignment:
Q  18 acacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||| ||| |||||||||||||||||||||||| |||| | |||||||| ||||| |||||||    
T  565372 acacaaggattatgacattgtgattggccaatgtca-ccaattatatgtcacccaagttctacccg 565308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 9173044 - 9173093
Alignment:
Q  6 aaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||| |||||    
T  9173044 aaagaaagagaaatacaagcattgtggcattgtgattggccaatatcacc 9173093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6217286 - 6217250
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||| |||||||||||||||||||||||    
T  6217286 cacaagcattgtggcattgtgattggccaatgtcacc 6217250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 7755390 - 7755334
Alignment:
Q  27 ttgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||| ||||||||||||||| | | | ||||||| |||||||||||||    
T  7755390 ttgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctacccg 7755334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 14229415 - 14229379
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||| |||||||||||    
T  14229415 cacaagcattgtgacattgtgattgaccaatgtcacc 14229379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 16514500 - 16514572
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcac---------ccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||||||||||||| |||||||||         ||||||||||||||| ||||||||||||    
T  16514500 cacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagtgctaccc 16514572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 45213912 - 45213942
Alignment:
Q  46 caatgtcacccaactctatgtcacacaagtg 76  Q
    |||||||||||||||||||||||||||||||    
T  45213912 caatgtcacccaactctatgtcacacaagtg 45213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 1992263 - 1992292
Alignment:
Q  29 gtgacattgtgattggccaatgtcacccaa 58  Q
    ||||||||||||||||||||||||||||||    
T  1992263 gtgacattgtgattggccaatgtcacccaa 1992292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 32545867 - 32545900
Alignment:
Q  22 aagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||| ||||||||||||||||||    
T  32545867 aagcattgtgacattatgattggccaatgtcacc 32545900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 33018621 - 33018657
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  33018621 cacaagcattgtgacattgtgattgaccaatatcacc 33018657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31654385 - 31654304
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  31654385 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatatcacccaagtgctaccc 31654304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 24618662 - 24618746
Alignment:
Q  4 tgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccgcattt 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| || |||||    
T  24618662 tgaaagagagagaaacacaagcattgtgacattgtgattggtcaacgtcacccaactctatgtcacccaagtgctatccacattt 24618746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12343180 - 12343106
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||||    
T  12343180 ttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaatgtcacccaactctatgtcacccaagt 12343106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 10521910 - 10521975
Alignment:
Q  4 tgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  10521910 tgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtcactcaactctatgtcac 10521975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 551223 - 551277
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  551223 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 551277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 10521908 - 10521851
Alignment:
Q  22 aagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10521908 aagcattgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgcta 10521851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2315362 - 2315443
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||| |||||| ||||||| ||  |||||||||   |||||||||| ||||||||||||||||||||||||||    
T  2315362 ttgtgaaagagagcgaaacataagcattatggtattgtgattattcaatgtcacctaactctatgtcacacaagtgctaccc 2315443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 17750982 - 17750896
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc--------caactctatgtcacacaagtgcta 79  Q
    |||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||        ||||||||||||||||||||||||    
T  17750982 ttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcaccaatgtcatcaactctatgtcacacaagtgcta 17750896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24587541 - 24587488
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    |||||||| || ||||||||||||||||||||||||||||||| ||||||||||    
T  24587541 ttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcac 24587488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 551227 - 551164
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||| ||| |||||| |||||    
T  551227 cacaaacattgtggcattgtgattgaccaatgtcacccaactctatgccacccaagtgttaccc 551164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 12343176 - 12343212
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  12343176 cacaagcattgtgacattgtgattggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13043537 - 13043489
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaat 49  Q
    ||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  13043537 ttgtgaaagagagagaaacacaagcattgtgacatttcgattgaccaat 13043489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 17750978 - 17751050
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtca---------cccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||    
T  17750978 cacaagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaagtgctaccc 17751050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 24618628 - 24618591
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  24618628 ccaatgtcacccaactctatgtcactcaagtgctaccc 24618591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 2315366 - 2315306
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||| |||||||||||||||||||  |||||||||||||||   |||||||||| |||||    
T  2315366 cacaaacattgtgacattgtgattgatcaatgtcacccaacttattgtcacacaaatgcta 2315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 6299202 - 6299164
Alignment:
Q  45 ccaatgtcacccaactct-atgtcacacaagtgctaccc 82  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  6299202 ccaatgtcacccaactcttatgtcacacaagtgctaccc 6299164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 6306012 - 6305974
Alignment:
Q  45 ccaatgtcacccaactct-atgtcacacaagtgctaccc 82  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  6306012 ccaatgtcacccaactcttatgtcacacaagtgctaccc 6305974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 13043533 - 13043569
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  13043533 cacaagcattgtgatattgtgattagccaatgtcacc 13043569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 24975814 - 24975778
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  24975814 cacaagcattgtggcattgtgattgaccaatgtcacc 24975778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6296685 - 6296603
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  6296685 ttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcatccaagtgctacccg 6296603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39851035 - 39850972
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctat 64  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  39851035 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctat 39850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 34229717 - 34229779
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 81  Q
    |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  34229717 cacaagcattgtgatattgtgattgaccaatgtcacctaactctatgtcacacaagtgctacc 34229779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35441027 - 35441081
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35441027 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 35441081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 34541865 - 34541801
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  34541865 cacaagcattgtgatattatgattggccaatgtcacccaactttatgtcacccaagtgctacccg 34541801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5667177 - 5667086
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac---------ccaactctatgtcacacaagtgctacccg 83  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||         ||||||||||||||| |||||||||||||    
T  5667177 ttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagtgctacccg 5667086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5033241 - 5033187
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  5033241 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacc 5033187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4958679 - 4958627
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtca 53  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  4958679 ttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtca 4958627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 8243450 - 8243387
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||| |||||||||||  ||||||||| |||||||||||||| ||||||||||||    
T  8243450 cacaagcattgtggcattgtgattgatcaatgtcactcaactctatgtcacccaagtgctaccc 8243387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 34229721 - 34229634
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattg---------gccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||||||| ||||||||||||||          | |||||||||||||||||||||||||||||||||    
T  34229721 ttgtgaaagagagagaaacacaagcattctgacattgtgattgactcatgtcactaatgtcacccaactctatgtcacacaagtgcta 34229634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8243446 - 8243500
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  8243446 ttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaacgtcacc 8243500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33841649 - 33841703
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  33841649 ttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcacc 33841703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8796502 - 8796449
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  8796502 ttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcac 8796449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10086837 - 10086784
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  10086837 ttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcac 10086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34541861 - 34541929
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    ||||||||||||||||||||||||||||||| |||| || | || ||||||||| ||||||||| ||||    
T  34541861 ttgtgaaagagagagaaacacaagcattgtggcattttgctaggtcaatgtcactcaactctatatcac 34541929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 2581895 - 2581853
Alignment:
Q  11 gagagaaacacaagcattgtgacattgtgattggccaatgtca 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtca 2581853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 5033237 - 5033310
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||| |||||||||||||    
T  5033237 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccg 5033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 43844534 - 43844569
Alignment:
Q  8 agagagagaaacacaagcattgtgacattgtgattg 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  43844534 agagagagaaacacaagcattgtgacattgtgattg 43844569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 45191188 - 45191239
Alignment:
Q  4 tgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||| |||||| ||||| ||||||| ||||||||||    
T  45191188 tgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcacc 45191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 1880323 - 1880376
Alignment:
Q  28 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||    
T  1880323 tgtgacattgtgattgaccaatgtca-ccaattctatgtcacccaagtgctaccc 1880376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 33841618 - 33841580
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  33841618 ccaatgtcacccaactctatgtcacccaagtgctacccg 33841580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 37618788 - 37618735
Alignment:
Q  20 acaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaag 74  Q
    ||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  37618788 acaaggattgtgacattgtgattggccaatgtca-ccaattctatgtcacccaag 37618735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 35441031 - 35440958
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||| ||||| |||||||||||||    
T  35441031 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctacccg 35440958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 39139838 - 39139899
Alignment:
Q  20 acaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 81  Q
    ||||| |||||||||||||||||| ||||||||||| ||  ||||||||| ||| |||||||    
T  39139838 acaaggattgtgacattgtgattgaccaatgtcaccaaatactatgtcacccaaatgctacc 39139899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 36766223 - 36766176
Alignment:
Q  22 aagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    ||||||| |||| ||||||| | |||||||||||||||||||||||||    
T  36766223 aagcattatgacgttgtgatcgaccaatgtcacccaactctatgtcac 36766176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 22649908 - 22649871
Alignment:
Q  18 acacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  22649908 acacaagcattgtggcattgtgattagccaatgtcacc 22649871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 5667173 - 5667209
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  5667173 cacaagcattatgacattgtaattggccaatgtcacc 5667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 8796498 - 8796534
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  8796498 cacaagcattgtgacattttgattggtcaatgtcacc 8796534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 10086833 - 10086869
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  10086833 cacaaacattgtgacattgtgattggtcaatgtcacc 10086869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 31159927 - 31159963
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||| |||||||| |||||||||    
T  31159927 cacaagcattgtgacattatgattggcgaatgtcacc 31159963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3899919 - 3899845
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  3899919 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 3899845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26662479 - 26662398
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26662479 ttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctatgtcacacaagtgctaccc 26662398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26934074 - 26933993
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26934074 ttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctatgtcacacaagtgctaccc 26933993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 28818997 - 28818916
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  28818997 ttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctaccc 28818916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 16971224 - 16971150
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  16971224 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaagtctatgtcacccaagt 16971150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 38134433 - 38134508
Alignment:
Q  3 gtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgct 78  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||    
T  38134433 gtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatccaactctatgtcgcccaagtgct 38134508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16439218 - 16439164
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16439218 ttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcacc 16439164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29699447 - 29699393
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29699447 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 29699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 3180122 - 3180059
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  3180122 cacaaacattgtgacattatgattgatcaatgtcacccaactctatgtcacacaagtgctaccc 3180059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3180118 - 3180172
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  3180118 ttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacc 3180172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12913883 - 12913829
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  12913883 ttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcacc 12913829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 16439214 - 16439268
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaa 73  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  16439214 cacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcacacaa 16439268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 16802524 - 16802442
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    |||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||| | ||||| ||  ||||||||||||    
T  16802524 ttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtcacccaaatttatgttacctaagtgctacccg 16802442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19655238 - 19655184
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  19655238 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 19655184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 6912359 - 6912295
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||| | ||||||| | |||||||||||| ||||||||||||||    
T  6912359 cacaagcattgtgacattgtgattgactaatgtcaactaactctatgtcatacaagtgctacccg 6912295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 291177 - 291123
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  291177 ttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcacc 291123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19598412 - 19598358
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  19598412 ttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcacc 19598358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2093995 - 2094062
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtca 68  Q
    |||||||||||||||||||||||||||| ||| | ||||||| | |||| |||||||| |||||||||    
T  2093995 ttgtgaaagagagagaaacacaagcattatgatagtgtgattagtcaatatcacccaattctatgtca 2094062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 2356345 - 2356277
Alignment:
Q  10 agagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||||||||| | ||||||| |||| | ||||||| ||||||||||||||||||| |||||    
T  2356345 agagagaaacacaagcattataacattgtaattgcctaatgtca-ccaactctatgtcacacaaatgcta 2356277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2953270 - 2953204
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||| |||||    
T  2953270 ttgtgaaagagagagaaacacaagcattgtga--------ttgaccaatgtcacccaactctatgtcacccaagt 2953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 16971220 - 16971293
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||| |||||||||||||    
T  16971220 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccg 16971293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 2953266 - 2953338
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaa---------tgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||||||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 2953338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 29699443 - 29699479
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  29699443 cacaagcattgtgacattgtgattggccaatgtcacc 29699479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 16802521 - 16802580
Alignment:
Q  20 acaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||| ||||  ||||||||    
T  16802521 acaagcattgtgacattctgattggtcaatgtcactcaactctatatcacttaagtgcta 16802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 19598408 - 19598470
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||| ||||||| |||||||  ||||||||||||||||||||||| |||||| |||||    
T  19598408 cacaagcatt-tgacattatgattggttaatgtcacccaactctatgtcacccaagtgttaccc 19598470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 2356382 - 2356420
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  2356382 ccaatgtcatccaactctatgtcacacaagtgctacccg 2356420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 3899915 - 3899951
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3899915 cacaagcattgtgacattgtgattggtcaatgtcacc 3899951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 19655234 - 19655270
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||| ||||||||||    
T  19655234 cacaagcattgtgacattgtgattggacaatgtcacc 19655270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 30117889 - 30117940
Alignment:
Q  4 tgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||| |||||||||||||||||||||| |||| |||||| ||||| |||||    
T  30117889 tgaaaaagagagaaacacaagcattgtggcattatgattgaccaatatcacc 30117940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 291208 - 291245
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  291208 ccaatgtcacccaactctatatcacccaagtgctaccc 291245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 1638521 - 1638484
Alignment:
Q  17 aacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  1638521 aacacaaacattgtgacattgtgattggccaatatcac 1638484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 2093964 - 2093927
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  2093964 ccaatatcacccaactctatgtcacccaagtgctaccc 2093927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 6912355 - 6912396
Alignment:
Q  35 ttgtgattggccaatgtcacccaactctatgtcacacaagtg 76  Q
    |||||||||| |||||||||| |||||||||||||| |||||    
T  6912355 ttgtgattggtcaatgtcaccaaactctatgtcacataagtg 6912396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 3899950 - 3899986
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctacc 81  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  3899950 ccaatgtcacccaactctaagtcacccaagtgctacc 3899986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 12913914 - 12913942
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaa 73  Q
    |||||||||||||||||||||||||||||    
T  12913914 ccaatgtcacccaactctatgtcacacaa 12913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 28818993 - 28819029
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||| |||||| |||||||||||    
T  28818993 cacaagcattgtgacattatgattgaccaatgtcacc 28819029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 47677313 - 47677391
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  47677313 ttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtcacccaactctatgtcacacaagtgcta 47677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 29031772 - 29031850
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||    
T  29031772 ttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacctaactctatgtcacacaagtgcta 29031850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 33689252 - 33689315
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  33689252 cacaagcattgtgacattgtgattggccaatgtcacccaactcaatgtcacccaagtgctaccc 33689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1801504 - 1801566
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactcta 63  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  1801504 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30476532 - 30476613
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||| || | ||| ||||||||    
T  30476532 ttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcacataactctatatcccccaaatgctaccc 30476613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39385746 - 39385813
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtca 68  Q
    |||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  39385746 ttgtgaaagagagagaaatacaaatattgtaacattgtgattggccaatgtcacccaactctatgtca 39385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 1801566 - 1801627
Alignment:
Q  14 agaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1801566 agaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 1801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 49414505 - 49414562
Alignment:
Q  25 cattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  49414505 cattgtgacattgtaattggccaatgtcacccaactctatgtcacccaagtgctaccc 49414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 30476536 - 30476476
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  30476536 cacaagcattgtgacattgtgattggccaatgtcacctagctctctgtcacacaagtgcta 30476476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33689256 - 33689172
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggc---------caatgtcacccaactctatgtcacacaagtg 76  Q
    ||||||||||||||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||||||||    
T  33689256 ttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaagtg 33689172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 43139771 - 43139708
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  43139771 cacaagcattctgacattgtgattgaccgatgtcacccaactctatgtcactcaagtgctaccc 43139708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43139767 - 43139821
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  43139767 ttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcacc 43139821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 51046131 - 51046185
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  51046131 ttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcacc 51046185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 47677317 - 47677260
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 76  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  47677317 cacaagcattgtgacattgtgatcggtcaatgtcaccaaactctatgtcacacaagtg 47677260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47492105 - 47492153
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaat 49  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47492105 ttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaat 47492153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 1272557 - 1272495
Alignment:
Q  17 aacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||||||||  ||||||||    
T  1272557 aacacaagcattgtgacaatttgattggccaatgtcaccaaactctatgtcacctaagtgcta 1272495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30734460 - 30734514
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  30734460 ttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcacc 30734514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41753044 - 41752990
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  41753044 ttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtcacc 41752990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 50550055 - 50550001
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  50550055 ttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcacc 50550001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30580814 - 30580867
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    |||||||||||| ||||||||||||| |||||||||||||||| ||||||||||    
T  30580814 ttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcac 30580867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50524782 - 50524730
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtca 53  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  50524782 ttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtca 50524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 49418742 - 49418691
Alignment:
Q  30 tgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 81  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  49418742 tgacattgtgattgaccaatatcacccaactctatgtcacccaagtgctacc 49418691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 18321727 - 18321776
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtca 68  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  18321727 cacatgcattgtgacattgtgattgaccaatgtcatccaactctatgtca 18321776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 29031776 - 29031727
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtca 68  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  29031776 cacaagcattgtgacattgtgattgaccaatatcacctaactctatgtca 29031727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49418749 - 49418806
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaa 58  Q
    |||||||||||||||||||||||||||| ||| ||| | |||| ||||||||||||||    
T  49418749 ttgtgaaagagagagaaacacaagcattatgatattataattgaccaatgtcacccaa 49418806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 47492109 - 47492073
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  47492109 cacaagcattgtgacattgtgattggccaatgtcacc 47492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 55223308 - 55223368
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||| |||||| ||||| ||||  ||||||||||||| |||||||||    
T  55223308 cacaagcattgtgacattatgattgaccaatatcacttaactctatgtcacccaagtgcta 55223368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 1272560 - 1272597
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1272560 ccaatgtcacccaactctatgtcacccaagtgctaccc 1272597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 18321730 - 18321677
Alignment:
Q  2 tgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||| ||||| |||||||| | ||||||||||||||||| |||||||||||    
T  18321730 tgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcacc 18321677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 45103136 - 45103099
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45103136 ccaatgtcacccaactctatgtcacccaagtgctaccc 45103099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 1801508 - 1801472
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||| |||||||||||||||||||||||    
T  1801508 cacaagcattgtggcattgtgattggccaatgtcacc 1801472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 41753040 - 41753076
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41753040 cacaagcattgtggcattgtgattggccaatgtcacc 41753076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 11512440 - 11512386
Alignment:
Q  28 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||| ||||||||||||||| | | | ||||||| ||||||||||||    
T  11512440 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctaccc 11512386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 30904319 - 30904289
Alignment:
Q  6 aaagagagagaaacacaagcattgtgacatt 36  Q
    |||||||||||||||||||||||||||||||    
T  30904319 aaagagagagaaacacaagcattgtgacatt 30904289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 55223259 - 55223225
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||| |||||||||||||||||||||||    
T  55223259 ccaatgtcacctaactctatgtcacacaagtgcta 55223225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 1801473 - 1801436
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  1801473 ccaatgtcacccaactctatgtcacccaagtgttaccc 1801436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 27729289 - 27729321
Alignment:
Q  26 attgtgacattgtgattggccaatgtcacccaa 58  Q
    |||||||||||||||||| ||||||||||||||    
T  27729289 attgtgacattgtgattgaccaatgtcacccaa 27729321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 63837 - 63763
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  63837 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 63763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 63833 - 63883
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  63833 cacaagcattgtgacattgtgattggccaatgtcacccaactctatatcac 63883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29053372 - 29053446
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  29053372 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 29053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42628375 - 42628307
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    |||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  42628375 ttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacccaactctatgtcac 42628307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 41018290 - 41018226
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  41018290 cacaagcattgggacattgtgattggccaatgtcacccaactctatgtcatccaagtgctacccg 41018226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11016949 - 11016895
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11016949 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 11016895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 4649393 - 4649332
Alignment:
Q  8 agagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  4649393 agagagagaaacacaagcattgtagcattgtgattgaccaatgtcacccaactctatgtcac 4649332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7671969 - 7672025
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccca 57  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  7671969 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccca 7672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22764758 - 22764812
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  22764758 ttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcacc 22764812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 34854757 - 34854695
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 81  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  34854757 cacaagcattgtggcattgtgattggccaatgtcaccaaactctatgtcacccaagtgttacc 34854695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45231908 - 45231962
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  45231908 ttgtgaaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcacc 45231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 27028852 - 27028795
Alignment:
Q  22 aagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  27028852 aagcattgtgacattgtgattgtccaatgttacccaactctatgtcacccaagtgcta 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 27028854 - 27028905
Alignment:
Q  4 tgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  27028854 tgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtcacc 27028905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38975885 - 38975835
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgt 51  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  38975885 ttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgt 38975835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41018286 - 41018340
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||| |||||||||| |||||||||||| ||||||||||    
T  41018286 ttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacc 41018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4649398 - 4649457
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgct 78  Q
    ||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  4649398 cacaagcatcgtgacattgtgattgaccaatgtcaccaaactctatgtcactcaattgct 4649457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 29053376 - 29053313
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||||| ||| || |||||    
T  29053376 cacaagcattgaggcattgtgattggccaatgtcaccaaactctatgtcacccaaatgttaccc 29053313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 48000816 - 48000769
Alignment:
Q  2 tgtgaaagagagagaaacacaagcattgtgacattgtgattggccaat 49  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  48000816 tgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4290625 - 4290571
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||    
T  4290625 ttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcacc 4290571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 15027622 - 15027568
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||| |||||||  ||||||||||| ||||||||||    
T  15027622 ttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcacc 15027568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 30165329 - 30165379
Alignment:
Q  25 cattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  30165329 cattatgacattgtgattgaccaatgtcacccaactctatatcacacaagt 30165379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34854753 - 34854807
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||    
T  34854753 ttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcacc 34854807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10419538 - 10419485
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    |||||||||||||||||||||||| ||||| ||||| |||||| ||||||||||    
T  10419538 ttgtgaaagagagagaaacacaagtattgtaacattatgattgaccaatgtcac 10419485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 27028795 - 27028754
Alignment:
Q  14 agaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcacc 27028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 45231902 - 45231853
Alignment:
Q  33 cattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  45231902 cattgtgattggtcaatgtcacccaactctatgtcacccaagtgttaccc 45231853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 11016980 - 11017018
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  11016980 ccaatgtcacccaactctatgtcacccaagtgctacccg 11017018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 42628406 - 42628443
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42628406 ccaatgtcacccaactctatgtcacccaagtgctaccc 42628443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 4290621 - 4290657
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||| ||||||||||||||||||||||||||||||    
T  4290621 cacaagaattgtgacattgtgattggccaatgtcacc 4290657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 15027618 - 15027654
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15027618 cacaagcattgtgacattgtgattggtcaatgtcacc 15027654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30217512 - 30217564
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtca 53  Q
    |||||||||||||||||||| || |||| ||| |||||||||||| |||||||    
T  30217512 ttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtca 30217564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 7671973 - 7671934
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaa 58  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  7671973 cacaagcattgtggcattgtgattggctaatgtcacccaa 7671934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 10419542 - 10419597
Alignment:
Q  27 ttgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||  |||||||||||| |||||||||| || |||||| |||||    
T  10419542 ttgtgacattgtgatcagccaatgtcaccaaactctatgttacccaagtgttaccc 10419597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 4290656 - 4290694
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  4290656 ccaatgtcacccaactgtatgtcacccaagtgctacccg 4290694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 11271565 - 11271507
Alignment:
Q  27 ttgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccgca 85  Q
    ||||||||||||| ||||||||||| ||| |   ||||||||| |||||||||||||||    
T  11271565 ttgtgacattgtggttggccaatgttaccaagtgctatgtcactcaagtgctacccgca 11271507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 25001399 - 25001349
Alignment:
Q  29 gtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||||| ||||||||||| |||||||| |||| ||| |||||    
T  25001399 gtgacattgtgattgtccaatgtcaccaaactctatttcacccaaatgcta 25001349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 7211913 - 7211860
Alignment:
Q  28 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 81  Q
    |||||||||||| ||||||||||||||| | | | ||||||| |||||||||||    
T  7211913 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctacc 7211860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 17272752 - 17272699
Alignment:
Q  28 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 81  Q
    |||||||||||| ||||||||||||||| | | | ||||||| |||||||||||    
T  17272752 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctacc 17272699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 32315762 - 32315709
Alignment:
Q  26 attgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||| ||||||||||||||| | | | ||||||| |||||||||    
T  32315762 attgtgacattgtggttggccaatgtcaccaaccacaatgtcacgcaagtgcta 32315709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42375090 - 42375016
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  42375090 ttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacccaactctatgtcacccaagt 42375016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 50384167 - 50384103
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50384167 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctacccg 50384103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40789259 - 40789192
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtca 68  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  40789259 ttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcaccaaactctatgtca 40789192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 52028629 - 52028554
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 76  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  52028629 ttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcacccaactctatgtcacccaagtg 52028554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 55090054 - 55090129
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 76  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  55090054 ttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtcacccaagtg 55090129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 47404643 - 47404717
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  47404643 ttgtgaaagagagagaaacccaagcattgtggcattgtgattgaccaatgtcacccaactctatgtcacccaagt 47404717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 47404647 - 47404583
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  47404647 cacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctacccg 47404583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 53954690 - 53954616
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  53954690 ttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatgtcacccaactttatatcacccaagt 53954616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 31430520 - 31430459
Alignment:
Q  22 aagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  31430520 aagcattgtgacattgtgattggtcaatgtcacccaactctatgtcacccaagtgctacccg 31430459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 40789255 - 40789319
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  40789255 cacaagcattgtgacattgtgattggccaatatcaccaaactctatgtcacccaagtgctacccg 40789319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 24006132 - 24006069
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  24006132 cacaagcattgtgtcattgtgattggccaatgtcacccaactgtatgtcacccaagtgctaccc 24006069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6271782 - 6271728
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6271782 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 6271728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23444327 - 23444381
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23444327 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 23444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30861832 - 30861886
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30861832 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 30861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47661922 - 47661868
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47661922 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 47661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 51265525 - 51265471
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51265525 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 51265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 55090058 - 55090001
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 76  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  55090058 cacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtcacccaagtg 55090001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 52028625 - 52028673
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtc 67  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52028625 cacaagcattgtgacattgtgattggccaatgtcacccaattctatgtc 52028673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35682246 - 35682192
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  35682246 ttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcacc 35682192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 31430522 - 31430590
Alignment:
Q  4 tgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    |||||||||||||||||||| |   ||| |||||| |||||||||||||||||||||||||||||| |||||    
T  31430522 tgaaagagagagaaacacaaac---gtggcattgtaattggccaatgtcacccaactctatgtcacccaagt 31430590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 24006151 - 24006198
Alignment:
Q  32 acattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  24006151 acattgtgattggtcaatgtcacccaactctatgtcacccaagtgcta 24006198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 26186081 - 26186124
Alignment:
Q  10 agagagaaacacaagcattgtgacattgtgattggccaatgtca 53  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  26186081 agagagaaacacaagcattgtgaaattgtgattggccaatgtca 26186124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 55089935 - 55089876
Alignment:
Q  23 agcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||  || ||||||||    
T  55089935 agcattgtgacattgtgattgaccaatgtcactcaactctatgtcacctaaatgctaccc 55089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 45591472 - 45591415
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 76  Q
    |||||||||||||||||| |||||| | |||| ||||||||||||| |||||||||||    
T  45591472 cacaagcattgtgacattatgattgacgaatgccacccaactctatatcacacaagtg 45591415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47762688 - 47762635
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    |||||||||||||||||||| || |||||| ||||||||||||| |||||||||    
T  47762688 ttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 6271778 - 6271814
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  6271778 cacaagcattgtgacattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 28693985 - 28693925
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||| |||||||| ||||||||||| |||||||| |||||| |||||||| |||||||||    
T  28693985 cacaaacattgtgatattgtgattggtcaatgtcatccaactttatgtcacccaagtgcta 28693925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38714903 - 38714835
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    |||||||||| | ||||||| ||  ||| |||||||||||||||||||| ||||| |||||||||||||    
T  38714903 ttgtgaaagaaatagaaacataaatattatgacattgtgattggccaatatcacctaactctatgtcac 38714835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 3862619 - 3862658
Alignment:
Q  16 aaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  3862619 aaacacaagcattgtggcattgtgattggccaatgtcacc 3862658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 3871376 - 3871415
Alignment:
Q  16 aaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  3871376 aaacacaagcattgtggcattgtgattggccaatgtcacc 3871415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 9712900 - 9712845
Alignment:
Q  27 ttgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||| |||||||||||||||||| ||  ||||||||| ||||||||||||    
T  9712900 ttgtgacattctgattggccaatgtcaccaaatgctatgtcacccaagtgctaccc 9712845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 26186078 - 26186039
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaa 58  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  26186078 cacaagcattgtgacattgtgattgaccaatgtcacccaa 26186039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 31532752 - 31532801
Alignment:
Q  6 aaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||| |||| ||||||||| |||||||||| ||||||||||    
T  31532752 aaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacc 31532801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 42375121 - 42375158
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42375121 ccaatgtcacccaactctatgtcacccaagtgctaccc 42375158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 53954721 - 53954758
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||||||||||||| |||||||||||    
T  53954721 ccaatgtcacccaactctatgtcacaaaagtgctaccc 53954758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 23444331 - 23444295
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||| ||||||||||    
T  23444331 cacaagcattgtgacattgtgattggtcaatgtcacc 23444295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 47661918 - 47661990
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||| ||| ||||||||    
T  47661918 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaatgctaccc 47661990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 50384163 - 50384194
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtga 32  Q
    ||||||||||||||||||||||||||||||||    
T  50384163 ttgtgaaagagagagaaacacaagcattgtga 50384194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 17285807 - 17285845
Alignment:
Q  20 acaagcattgtgacattgtgattggccaatgtcacccaa 58  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  17285807 acaagtattgtgacattgtgattggtcaatgtcacccaa 17285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 25618007 - 25617977
Alignment:
Q  46 caatgtcacccaactctatgtcacacaagtg 76  Q
    |||||||||||||||||||||||||||||||    
T  25618007 caatgtcacccaactctatgtcacacaagtg 25617977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 44380001 - 44379959
Alignment:
Q  10 agagagaaacacaagcattgtgacattgtgattggccaatgtc 52  Q
    |||||||||| |||||||||||||||| | |||||||||||||    
T  44380001 agagagaaacgcaagcattgtgacattataattggccaatgtc 44379959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 51265556 - 51265593
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  51265556 ccaatgtcacccaactctaagtcacccaagtgctaccc 51265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 19184551 - 19184595
Alignment:
Q  35 ttgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||| |||||||||||||||| || ||||| |||||||||    
T  19184551 ttgtgattgaccaatgtcacccaactttacgtcacccaagtgcta 19184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 34176246 - 34176278
Alignment:
Q  51 tcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||| |||||||||||||    
T  34176246 tcacccaactctatgtcactcaagtgctacccg 34176278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 35682242 - 35682278
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||| || ||||||||||    
T  35682242 cacaagcattgtgacattgtgatcggtcaatgtcacc 35682278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 44379958 - 44379918
Alignment:
Q  44 gccaatgtcacccaactctatgtcacacaagtgctacccgc 84  Q
    ||||||||||| |||||||||||||  ||||||||||||||    
T  44379958 gccaatgtcactcaactctatgtcatccaagtgctacccgc 44379918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 51265521 - 51265557
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  51265521 cacaagcattgtgacattatgattggtcaatgtcacc 51265557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 54716396 - 54716348
Alignment:
Q  34 attgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||  |||||||||||||||||||||||| ||| | ||||||    
T  54716396 attgtgattgatcaatgtcacccaactctatgtcactcaaatactaccc 54716348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 63)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 29371448 - 29371370
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  29371448 ttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcacctaactctatgtcacccaaatgcta 29371370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34062289 - 34062221
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  34062289 ttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcacccaactctatgtcac 34062221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 49444976 - 49445043
Alignment:
Q  8 agagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  49444976 agagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 49445043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8337909 - 8337983
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  8337909 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtcacccaactctatgtcacccaagt 8337983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 15220891 - 15220813
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| ||||||| |||||||||    
T  15220891 ttgtgaaagagagagaaacacaagcattgtgagatcgtgattgaccaatgtcacccaactccatgtcacccaagtgcta 15220813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46334004 - 46334078
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  46334004 ttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtcatccaactctatgtcacccaagt 46334078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 48823945 - 48823884
Alignment:
Q  21 caagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48823945 caagcattgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctaccc 48823884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 46334008 - 46333944
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  46334008 cacaagcattgtgacattgtgattggccaatgtcatccaactctatgtcacccaagtgctacccg 46333944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37155126 - 37155072
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37155126 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 37155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 4609072 - 4609128
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4609072 cacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 4609128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 38674570 - 38674629
Alignment:
Q  10 agagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  38674570 agagagaaacacaagcattgtgacattatgattggccaatatcacccaactctatgtcac 38674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 47303475 - 47303396
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctac 80  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||| |||||||| |||| ||||||||||    
T  47303475 ttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcacctaactctatatcactcaagtgctac 47303396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 28928841 - 28928779
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacc 81  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  28928841 cacaagcactgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgctacc 28928779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29179655 - 29179709
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29179655 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 29179709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 741560 - 741617
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  741560 ttgtgaaagagagagaaacacaagcattgtgacattgtgatcgaccaatgtcacccaa 741617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 9157386 - 9157306
Alignment:
Q  5 gaaagagagagaaacacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtg 76  Q
    ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  9157386 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 9157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5995449 - 5995399
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgt 51  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5995449 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 5995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 21630118 - 21630068
Alignment:
Q  5 gaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32540806 - 32540860
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  32540806 ttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcacc 32540860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44706842 - 44706896
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  44706842 ttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 44706896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48993975 - 48994029
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  48993975 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacc 48994029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17127622 - 17127675
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  17127622 ttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcac 17127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 741564 - 741500
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    |||||||||||||||||||||||||| |||||||||| || ||||| |||| |||||||||||||    
T  741564 cacaagcattgtgacattgtgattgggcaatgtcacctaattctatatcacgcaagtgctacccg 741500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 1819551 - 1819491
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||    
T  1819551 cacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcattcaagtgcta 1819491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 38674567 - 38674511
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  38674567 cacaagcattgtgacattgtgattggccaatatcacccaactccatgtcacccaagt 38674511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 34062285 - 34062348
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  34062285 cacaaacattgtgacattgtgattggtcaatgtcacccaactctatgttacccaaatgctaccc 34062348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48605005 - 48605064
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaact 60  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||    
T  48605005 ttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtcactcaact 48605064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1091602 - 1091656
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  1091602 ttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcacc 1091656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4609076 - 4609022
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  4609076 ttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcacc 4609022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 9157388 - 9157446
Alignment:
Q  21 caagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||    
T  9157388 caagcattgtgatattgtgattgatcaatgtcaaccaactctatgtcacacaagtgcta 9157446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33219653 - 33219579
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagt 75  Q
    |||||||||||||| ||||||||||||||| ||||||||||||  |||||||| |||| |||| ||||| |||||    
T  33219653 ttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgtcatccaattctacgtcactcaagt 33219579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 37155122 - 37155180
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactcta-tgtcacacaagtg 76  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  37155122 cacaagtattgtgacattgtgattggccaatgtcacccaactctattgtcacccaagtg 37155180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45728367 - 45728313
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  45728367 ttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcacc 45728313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 47303471 - 47303525
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaa 73  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  47303471 cacaaacattgtgacattgtgattgaccaatgtcacctaactctatgtcacacaa 47303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5694947 - 5695004
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaa 58  Q
    |||||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||    
T  5694947 ttgtgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtcacccaa 5695004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 28395708 - 28395663
Alignment:
Q  10 agagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36290465 - 36290548
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagt 75  Q
    |||||||||||||||||||||||  |||||||||||||||||||         ||||||||||||||||||||||||| |||||    
T  36290465 ttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagt 36290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 48498491 - 48498553
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||| || ||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  48498491 cacaagcatggtaacattgtgattggtcaatgtca-ccaactctatgtcacccaagtgctaccc 48498553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 19711242 - 19711192
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  19711242 cacatgcattgtaacattgtgattggtcaatgtcacccaactctatgtcac 19711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 32157602 - 32157650
Alignment:
Q  20 acaagcattgtgacattgtgattggccaatgtcacccaactctatgtca 68  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||    
T  32157602 acaagcattgtgacactgtgattgaccaatgtcaccaaactctatgtca 32157650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 48993979 - 48993907
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  48993979 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 48993907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 4579222 - 4579168
Alignment:
Q  27 ttgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||    
T  4579222 ttgtgacattgtggttggccaatgtca-ccaattctatgtcacccaagtgctaccc 4579168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 36290463 - 36290428
Alignment:
Q  33 cattgtgattggccaatgtcacccaactctatgtca 68  Q
    ||||||||||||||||||||||||||||||||||||    
T  36290463 cattgtgattggccaatgtcacccaactctatgtca 36290428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 8337913 - 8337853
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctac 80  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||||| ||||  |||||||||    
T  8337913 cacaaacattgtgacattgtgattgaccaatgtca-ccaactctatatcacctaagtgctac 8337853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 28928837 - 28928907
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||        ||| |||||||||||||||||||| |||||||| |||| |||||||||    
T  28928837 ttgtgaaagagagagaaacacaa--------acactgtgattggccaatgtcaccaaactctatatcactcaagtgcta 28928907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 29179659 - 29179586
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||  |||||||||||||    
T  29179659 cacaagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagtgctacccg 29179586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48498495 - 48498442
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 54  Q
    ||||||||||||||||||||||| |||||||  ||| |||||| ||||||||||    
T  48498495 ttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtcac 48498442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 48605002 - 48604945
Alignment:
Q  26 attgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    |||||||||||||||||| ||||||||||| |||||||| |||  ||| |||||||||    
T  48605002 attgtgacattgtgattgaccaatgtcacctaactctatatcatccaaatgctacccg 48604945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 49444940 - 49444903
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  49444940 ccaatgtcacccaactctatgtcacccaagtgctaccc 49444903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 4579263 - 4579310
Alignment:
Q  34 attgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  4579263 attgtgattggccaatgtca-ccaattctatgtcacccaagtgctaccc 4579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 32540810 - 32540774
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||| ||||    
T  32540810 cacaagcattgtgacattgtgattggccaatgccacc 32540774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 17127626 - 17127591
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcac 54  Q
    |||||||||||||||||||||||||| |||||||||    
T  17127626 cacaagcattgtgacattgtgattggtcaatgtcac 17127591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 5694937 - 5694895
Alignment:
Q  34 attgtgattggccaatgtcacccaactctatgtcacacaagtg 76  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||    
T  5694937 attgtgattgaccaatgtcaccaaactctatgtcactcaagtg 5694895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 28739418 - 28739472
Alignment:
Q  28 tgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    |||||||||||| ||||||||||||||| | | | ||||||| ||||||||||||    
T  28739418 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctaccc 28739472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 46932061 - 46932023
Alignment:
Q  17 aacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  46932061 aacacaaacattgtggcattgtgattggccaatgtcacc 46932023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 2573217 - 2573160
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtg 76  Q
    |||||||||||||| ||||||||| | |||| |||| |||||||||||| | ||||||    
T  2573217 cacaagcattgtgatattgtgattagtcaatatcactcaactctatgtcccccaagtg 2573160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 15220922 - 15220959
Alignment:
Q  45 ccaatgtcacccaactctatgtcacacaagtgctaccc 82  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  15220922 ccaatgtcacccaactctatgtcacccaaatgctaccc 15220959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 29371444 - 29371513
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    ||||||||||||||||||||||||||         ||||||||||| | |||||||||||||||||||||    
T  29371444 cacaagcattgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagtgcta 29371513  T

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Target: chr1; HSP #59
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 44183446 - 44183417
Alignment:
Q  29 gtgacattgtgattggccaatgtcacccaa 58  Q
    ||||||||||||||||||||||||||||||    
T  44183446 gtgacattgtgattggccaatgtcacccaa 44183417  T

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Target: chr1; HSP #60
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 44183438 - 44183475
Alignment:
Q  46 caatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  44183438 caatgtcacctaactctatgtcacccaagtgctacccg 44183475  T

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Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 5995445 - 5995481
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  5995445 cacaagcattgtggcattgtgattggtcaatgtcacc 5995481  T

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Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 15220887 - 15220923
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||| |||||||||||||||| |||||    
T  15220887 cacaagcattgtgagattgtgattggccaatatcacc 15220923  T

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Target: chr1; HSP #63
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 44706846 - 44706806
Alignment:
Q  19 cacaagcattgtgacatt-gtgattggccaatgtcacccaa 58  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  44706846 cacaagcattgtggcatttgtgattggccaatgtcacccaa 44706806  T

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Target: scaffold0016 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49761 - 49829
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  49761 ttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgtcacctaactctatgtcac 49829  T

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Target: scaffold0016; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 49765 - 49692
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacacaagtgctacccg 83  Q
    ||||||||||||||||||||||||||          |||||||||||||||||||||||| |||||||||||||    
T  49765 cacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagtgctacccg 49692  T

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Target: scaffold0586 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7105 - 7159
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7105 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 7159  T

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Target: scaffold0586; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7109 - 7048
Alignment:
Q  19 cacaagcattgtgacattgtgattgg---------ccaatgtcacccaactctatgtcacac 71  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  7109 cacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgtcacac 7048  T

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Target: scaffold1033 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 2289 - 2349
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  2289 cacaagcattgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgcta 2349  T

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Target: scaffold1033; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2293 - 2265
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattg 29  Q
    |||||||||||||||||||||||||||||    
T  2293 ttgtgaaagagagagaaacacaagcattg 2265  T

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Target: scaffold1029 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 2289 - 2349
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  2289 cacaagcattgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgcta 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2293 - 2265
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattg 29  Q
    |||||||||||||||||||||||||||||    
T  2293 ttgtgaaagagagagaaacacaagcattg 2265  T

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Target: scaffold0161 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27278 - 27332
Alignment:
Q  1 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 55  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  27278 ttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaatatcacc 27332  T

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Target: scaffold0481 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 2949 - 2899
Alignment:
Q  19 cacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcac 69  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  2949 cacaaacattgtgacattgtgattggtcaatatcacccaactctatgtcac 2899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 19148 - 19115
Alignment:
Q  46 caatgtcacccaactctatgtcacacaagtgcta 79  Q
    |||||||||||||||||||||||||||| |||||    
T  19148 caatgtcacccaactctatgtcacacaaatgcta 19115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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