View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6135_low_4 (Length: 541)
Name: NF6135_low_4
Description: NF6135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6135_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 68 - 525
Target Start/End: Complemental strand, 51332943 - 51332488
Alignment:
| Q |
68 |
atataaatggaaaaaagaacctgcccttataaacattacataaaaaatggaaaggtagtcgcatgtctaagcttttatgtaattaagaaatttcatgaat |
167 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51332943 |
atataaatggaaaaa-gaacctgcccttataaacattacataaaaaatggaaaggttgtcgcatgtctaagcttttatgtaattaagaaatttcatgaat |
51332845 |
T |
|
| Q |
168 |
tacactagagtaggtacgtgatgcaatgctctaaaataagggttatttggtctttttattaaattcaatgctctctctcccacctttcttctcaatctgg |
267 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51332844 |
tacactagagtaggtacgcgatgcaatgctctaaaataagggttatttgatctttttattaaattcaatgctctctc--ccacctttcttctcaatctgg |
51332747 |
T |
|
| Q |
268 |
tgtggaaagttttatagtcatggggtccacaaaaagtacactttctttcctcactaactt-gcaaccaaacaatgaaatgaaatttttccataaactttc |
366 |
Q |
| |
|
|| ||||||||||||| ||| |||||| |||||||||| ||||||| |||| | || | | |||||||| ||||||||||| ||||||||||||||| |
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| T |
51332746 |
tgcggaaagttttatacctatgaggtccataaaaagtacattttcttttctcattgacctagaaaccaaactatgaaatgaaacttttccataaactttt |
51332647 |
T |
|
| Q |
367 |
tgtcctccctaccatcaatccttccacaataagtagaaacaaacaagcccttagagataaagagttgtttagttcaatagagaaaaagtggtaaaaagag |
466 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51332646 |
tgtccttcctaccatcaatccttccacaatccgtagaaacaaacaagtccttagagataaagagttgtttagttcaattgagaaaaagtggtaaaaagag |
51332547 |
T |
|
| Q |
467 |
tcaaatataccaaaacttgcctaaataagatggtaaactatttctcagatacaaacttt |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51332546 |
tcaaatataccaaaacttgcctaaataagatggtaaactatttctcagatacaaacttt |
51332488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 51333015 - 51332956
Alignment:
| Q |
16 |
tattaaatgacacaagtacctctcatttaaaatataacattttattataattatataaat |
75 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
51333015 |
tattaaatgacataagtacccctcatttaaaatataatattttattacaattatataaat |
51332956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 39566356 - 39566770
Alignment:
| Q |
16 |
tattaaatgacacaagtacctctcatttaaaatataacattttattataattatat---------------aaatggaaaaaagaacctgcccttataaa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
39566356 |
tattaaatgacacaagtacccctcatttaaaatataacattttattacaattatataaatatatataatataaatggaaaaaagaacctgcccttataaa |
39566455 |
T |
|
| Q |
101 |
cattacataaaaaatggaaaggtagtcgcatgtctaagcttttatgtaattaagaaatttcatgaattacactagagtaggtacgtgatgcaatgctcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
39566456 |
cattacataaaaaatggaaaggtagtcgcatgtctaagcttttatgtaattaagaaatttcatgaattacactagagtaggtatgtgatgcaatgctcta |
39566555 |
T |
|
| Q |
201 |
aaataagggttatttggtctttttattaaattcaatgctctctctcccacctttcttctcaatctggtgtggaaagttttatagtcatggggtccacaaa |
300 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||| |
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|
| T |
39566556 |
aaataagggttattttgtctttttactaaattcaatg--ctctctcccacctttcttctcaatctggtgcagaaagttttttagccat-gggtccacaaa |
39566652 |
T |
|
| Q |
301 |
aagtacactttctttcctcactaacttgc-aaccaaacaatgaaatgaaatttttccataaactttctgtcctccctaccatcaatccttccacaataag |
399 |
Q |
| |
|
||||||||||||||| ||||| || ||| |||||||| ||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| || |
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|
| T |
39566653 |
aagtacactttctttgttcactgacatgcaaaccaaactatggaatgaaacttttccataaactttatgtcctccctactatcaatccttccacaatcag |
39566752 |
T |
|
| Q |
400 |
tagaaacaaacaagccct |
417 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
39566753 |
tggaaacaaacaagccct |
39566770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 23630634 - 23630221
Alignment:
| Q |
16 |
tattaaatgacacaagtacctctcatttaaaatataacattttattataattatataaat---------------ggaaaaaagaacctgcccttataaa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
23630634 |
tattaaatgacacaagtacccctcatttaaaatataacattttattacaattatataaatatatataatataaatggaaaaaagaacctgccgttataaa |
23630535 |
T |
|
| Q |
101 |
cattacataaaaaatggaaaggtagtcgcatgtctaagcttttatgtaattaagaaatttcatgaattacactagagtaggtacgtgatgcaatgctcta |
200 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
23630534 |
cattacataaaaaatagaaagatagtcgcatgtataaacttttatgtaattaagaaatttcatgaactacactaga-taggtacgtgatgcaatgctcta |
23630436 |
T |
|
| Q |
201 |
aaataagggttatttggtctttttattaaattcaatgctctctctcccacctttcttctcaatctggtgtggaaagttttatagtcatggggtccacaaa |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||| | || ||| || ||| |
|
|
| T |
23630435 |
aaataagggttatttgttctttttattaaattcaatg--ctctctcccacctttcttctcaat---ggacggaaagttttttagccctgaggttcataaa |
23630341 |
T |
|
| Q |
301 |
aagtacactttctttcctcactaacttgc-aaccaaacaatgaaatgaaatttttccataaactttctgtcctccctaccatcaatccttccacaataag |
399 |
Q |
| |
|
||||||| |||||||||||||| || ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||| ||||| |
|
|
| T |
23630340 |
aagtacattttctttcctcactgacatgcaaaccaaactatgaaatgaaacttttctataaactttatgtcctccctactatcaatccttccacgataag |
23630241 |
T |
|
| Q |
400 |
tagaaacaaacaagccctta |
419 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
23630240 |
tggaaacaaacaagccctta |
23630221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 412
Target Start/End: Original strand, 17715004 - 17715410
Alignment:
| Q |
16 |
tattaaatgacacaagtacctctcatttaaaatataacattttattataattata---taaatggaaaaaagaac-ctgcccttataaacattacataaa |
111 |
Q |
| |
|
|||| ||||||||||||| | ||| |||||||||||||||||||||| ||||||| |||||||| |||||||| | | |||||||||||||||||||| |
|
|
| T |
17715004 |
tattgaatgacacaagtatccctcgtttaaaatataacattttattacaattataatataaatggataaaagaactccgtccttataaacattacataaa |
17715103 |
T |
|
| Q |
112 |
aaa-tggaaaggtagtcgcatgtctaagcttttatgtaattaagaaatttcatgaattacactagagtaggta--cgtgatgcaatgctctaaaataagg |
208 |
Q |
| |
|
||| ||||||||||||||||| | ||| ||| |||||||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
17715104 |
aaaatggaaaggtagtcgcatatttaaacttctatgtaatcaagaaatttcatgaagaacacttgagtaggtaaacgtgatgcaatgctctaaaacaagg |
17715203 |
T |
|
| Q |
209 |
gttatttggtctttttattaaattcaatgctctctctcccacctttcttctcaatctggtgtggaaagttttatagtcatggggtccacaaaaagtacac |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||||||||| ||| | ||| ||||||||||||||||||| |
|
|
| T |
17715204 |
gttatttggtctttttgctaaattcaatg--ttctctcccaaatttcttttcaatctggtgtggaaagcttttaaaccattgggtccacaaaaagtacac |
17715301 |
T |
|
| Q |
309 |
tttctttcctcactaacttgc-aaccaaacaatgaaatgaaatttttccataaactttctgtcctcccta----ccatcaatccttccacaataagtaga |
403 |
Q |
| |
|
|||||||||||| | || ||| || ||||| ||| ||| | | |||||||| |||||||||||||| ||| | ||||||||||||||||| | | || |
|
|
| T |
17715302 |
tttctttcctcattgacatgcaaatcaaacgatggaatcacacttttccatgaactttctgtcctcactactatctatcaatccttccacaatcaattga |
17715401 |
T |
|
| Q |
404 |
aacaaacaa |
412 |
Q |
| |
|
||||||||| |
|
|
| T |
17715402 |
aacaaacaa |
17715410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5606741 - 5606682
Alignment:
| Q |
16 |
tattaaatgacacaagtacctctcatttaaaatataacattttattataattatataaat |
75 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
5606741 |
tattaaatgacacaagtaccccacatttaaaatataatattttattacaattatataaat |
5606682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 5606215 - 5606123
Alignment:
| Q |
183 |
acgtgatgcaatgctctaaaataagggttatttggtctttttattaaattcaatgctctctctcccacctttcttctcaatctggtgtggaaag |
276 |
Q |
| |
|
|||||||| |||||||||||| | ||| |||||||||||||||||||||| |||| |||||||| || ||||||| |||| ||| ||| |||| |
|
|
| T |
5606215 |
acgtgatgaaatgctctaaaaga-gggctatttggtctttttattaaattgaatgttctctctctcagttttcttcgcaatttggggtgaaaag |
5606123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 24273894 - 24273952
Alignment:
| Q |
16 |
tattaaatgacacaagtacctctcatttaaaatataacattttattataattatataaat |
75 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
24273894 |
tattaaatgacacaagtacc-cacatttaaaatataatattttattacaattatataaat |
24273952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 24388319 - 24388261
Alignment:
| Q |
16 |
tattaaatgacacaagtacctctcatttaaaatataacattttattataattatataaat |
75 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
24388319 |
tattaaatgacacaagtacc-cacatttaaaatataatattttattacaattatataaat |
24388261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 24274098 - 24274158
Alignment:
| Q |
185 |
gtgatgcaatgctctaaaataagggttatttggtctttttattaaattcaatgctctctctc |
246 |
Q |
| |
|
|||||| |||||||||||| | ||| |||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
24274098 |
gtgatgaaatgctctaaaaca-gggctatttgatctttttattaaattgaatgttctctctc |
24274158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 24388116 - 24388056
Alignment:
| Q |
185 |
gtgatgcaatgctctaaaataagggttatttggtctttttattaaattcaatgctctctctc |
246 |
Q |
| |
|
|||||| |||||||||||| | ||| |||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
24388116 |
gtgatgaaatgctctaaaaca-gggctatttgatctttttattaaattgaatgttctctctc |
24388056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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