View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6136_high_1 (Length: 759)

Name: NF6136_high_1
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6136_high_1
NF6136_high_1
[»] chr3 (21 HSPs)
chr3 (102-741)||(763242-763881)
chr3 (408-737)||(9585122-9585451)
chr3 (102-378)||(9584775-9585056)
chr3 (8-105)||(762888-762985)
chr3 (557-739)||(783935-784120)
chr3 (340-603)||(13526474-13526737)
chr3 (17-97)||(9599343-9599423)
chr3 (564-608)||(9587328-9587372)
chr3 (564-607)||(1437864-1437907)
chr3 (565-608)||(43991827-43991870)
chr3 (201-239)||(2442260-2442298)
chr3 (200-239)||(783590-783629)
chr3 (572-607)||(2456106-2456141)
chr3 (566-601)||(2659297-2659332)
chr3 (198-233)||(12218278-12218313)
chr3 (196-239)||(13526841-13526884)
chr3 (565-607)||(771649-771691)
chr3 (688-730)||(771769-771811)
chr3 (554-608)||(14888745-14888799)
chr3 (198-231)||(989634-989667)
chr3 (199-232)||(43992212-43992245)
[»] chr2 (5 HSPs)
chr2 (571-608)||(33020180-33020217)
chr2 (565-608)||(33026521-33026564)
chr2 (565-608)||(33038018-33038061)
chr2 (574-607)||(7160913-7160946)
chr2 (198-231)||(36577635-36577668)
[»] chr7 (2 HSPs)
chr7 (566-607)||(27755555-27755596)
chr7 (567-607)||(24723213-24723253)
[»] scaffold0044 (1 HSPs)
scaffold0044 (410-608)||(89013-89211)
[»] chr6 (2 HSPs)
chr6 (198-237)||(9825298-9825337)
chr6 (198-232)||(9819612-9819646)
[»] chr1 (1 HSPs)
chr1 (564-607)||(51221347-51221390)


Alignment Details
Target: chr3 (Bit Score: 612; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 102 - 741
Target Start/End: Original strand, 763242 - 763881
Alignment:
Q  102 taaggagaacaagcatgaaataaatgacattaataaaaggtaacataagttctagttgaatctcgcgataagtgactgaccataacatctaactaataac 201  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763242 taaggagaacaagcatgaaataaataacattaataaaaggtaacataagttctagttgaatctcgcgataagtgactgaccataacatctaactaataac 763341  T
Q  202 attaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaattttttgacgcgctgacacattaaaagtaccacttttgga 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  763342 attaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaattttttgacgcgctgacatattaaaagtaccacttttgga 763441  T
Q  302 gtcatagacagtaaccatcaattcctcccaatgtttataataaattagcacttggtcatcctccgtgatatataaaggactgtcatagggatagagaccc 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||     
T  763442 gtcatagacagtaaccatcaattcctcccaatgtttataataaattagcacttggtcatcctccgtgatatataaaggaccgtcattgggatagagacca 763541  T
Q  402 tgaacttgcatgtaaggaacacggtacaatttattccgtggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaa 501  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763542 tgaacttgcatgtaaggaacacggtacaatttattccatggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaa 763641  T
Q  502 tgatgtacaagcgatccatcaacaccctcaaggtccaactatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagaga 601  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763642 tgatgtacaagcgatccatcaacgccctcaaggtccaactatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagaga 763741  T
Q  602 aacaatgttgtgcgaagaactactctcatgtgccaaccaattaatggtacctctagcaaatactcctggttcactaatgtagccataatatggtaagtct 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763742 aacaatgttgtgcgaagaactactctcatgtgccaaccaattaatggtacctctagcaaatactcctggttcactaatgtagccataatatggtaagtct 763841  T
Q  702 tgtatcctcctccaagaatccgtacccagagtataaacta 741  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  763842 tgtatcctcctccaagaatccgtacccagagtataaacta 763881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 408 - 737
Target Start/End: Original strand, 9585122 - 9585451
Alignment:
Q  408 tgcatgtaaggaacacggtacaatttattccgtggctcttcattatcatagtct-ttcataatccaaatatccacaaatgttttaaaacttgcaatgatg 506  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||| ||| |||||||||||||||||||||||| | |  |||| |||||  |||    
T  9585122 tgcatgtaaggaacacggtacaatttactccacggctcttcattatcata-tctcttcataatccaaatatccacaaatttctcgaaacgtgcaaatatg 9585220  T
Q  507 tacaagcgatccatcaacaccctcaaggtccaactatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaa 606  Q
     |||||| ||||||  |  ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9585221 cacaagcaatccatggattccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaa 9585320  T
Q  607 tgttgtgcgaagaact---actctcatgtgccaaccaattaatggtacctctagcaaatactcctggttcactaatgtagccataatatggtaagtcttg 703  Q
    |||| || ||||||||   |   |||| |||||||||||||||||||||||||||||||||||||  | ||||| || ||||   |||||||||||||||    
T  9585321 tgttatgtgaagaactctgagaatcatatgccaaccaattaatggtacctctagcaaatactcctactgcactagtggagcc---atatggtaagtcttg 9585417  T
Q  704 tatcctcctccaagaatccgtacccagagtataa 737  Q
     |||||||||||| |||||||||||| |||||||    
T  9585418 gatcctcctccaacaatccgtacccaaagtataa 9585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 102 - 378
Target Start/End: Original strand, 9584775 - 9585056
Alignment:
Q  102 taaggagaacaagcatgaaataaatgacattaataaaaggtaa-----cataagttctagttgaatctcgcgataagtgactgaccataacatctaacta 196  Q
    |||| ||||||||||| || ||||| ||| ||||||||| |||     |||||||| || | |||||||  |||||||||| ||||||||||||||| ||    
T  9584775 taagaagaacaagcataaactaaataacagtaataaaagctaagttaacataagttgtaatcgaatctccagataagtgacagaccataacatctaatta 9584874  T
Q  197 ataacattaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaattttttgacgcgctgacacattaaaagtaccactt 296  Q
    | ||||| ||| |||||||||||| |||||||| ||||||||| ||||| |  || |||||||||| | |||| || |||||| ||||||||||||||||    
T  9584875 acaacatcaaggacaaggtgatatcaaactctcgacatagacttctggattaaaataaccattaatgtcttgaggcactgacatattaaaagtaccactt 9584974  T
Q  297 ttggagtcatagacagtaaccatcaattcctcccaatgtttataataaattagcacttggtcatcctccgtgatatataaag 378  Q
    ||||| ||||||||||||| |||||||| | || ||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  9584975 ttggaatcatagacagtaaacatcaattgcaccaaatttctataatacattagcacttggtcatcctccgtgatatataaag 9585056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 762888 - 762985
Alignment:
Q  8 cgaagaatataagtgattgaagaaagataaaagtgcagaatgatttagtggagggggaaacacctgatatatgtgtagtagttaacataataattaag 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  762888 cgaagcatataagtgattgaagaaagataaaagtgcagaatgatttagtggtgggggaaacacctgatatatgtgtagtagttaacataataattaag 762985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 557 - 739
Target Start/End: Original strand, 783935 - 784120
Alignment:
Q  557 aggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaatgttgtgcgaagaactact---ctcatgtgccaaccaattaatggtacct 653  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||||||||   ||| ||||||||||    |||| || ||||||||||||||| ||     
T  783935 aggcttcaaaagattttgatacgactcattctccaaatcaagagaaacaatgacatgcaaagaactacttgcatcatatgtcaaccaattaatggtgcca 784034  T
Q  654 ctagcaaatactcctggttcactaatgtagccataatatggtaagtcttgtatcctcctccaagaatccgtacccagagtataaac 739  Q
    ||  |||| ||||| ||   |  | ||  |||| ||||||| |||||||| ||||||||||||||||| ||||||| |||||||||    
T  784035 ctcacaaagactccaggcataggactggggccagaatatgggaagtcttggatcctcctccaagaatcggtacccaaagtataaac 784120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 603
Target Start/End: Complemental strand, 13526737 - 13526474
Alignment:
Q  340 aataaattagcacttggtcatcctccgtgatatataaaggactgtcatagggatagagaccctgaacttgcatgtaaggaacacggtacaatttattccg 439  Q
    |||| ||||||||||||||||| ||||| |||||||||||  ||  |||||||  |   ||| ||  |  ||||||||||||| | ||||||||  |||     
T  13526737 aatacattagcacttggtcatcttccgtaatatataaaggcgtgcaatagggacggtttccccgatataccatgtaaggaacatgatacaatttggtcca 13526638  T
Q  440 tggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaatgatgtacaagcgatccatcaacaccctcaaggtccaa 539  Q
    |||||  | |||  || | || ||||||||||||| |||||||||  | |||  |  |||||  ||| |||||| |||| ||||||||| ||| ||||||    
T  13526637 tggctggttatttccacattcattcataatccaaacatccacaaacatattagtatatgcaaatatggacaagcaatccttcaacacccccaaagtccaa 13526538  T
Q  540 ctatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagagaaa 603  Q
    | ||||||||| | |||||| |   |||||||||||||||| ||||| || |||||||||||||    
T  13526537 caatttgtctcaacattagggtgcgaaagcttttgatacgattccttttcaaaatcaagagaaa 13526474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 9599343 - 9599423
Alignment:
Q  17 taagtgattgaagaaagataaaagtgcagaatgatttagtggagggggaaacacctgatatatgtgtagtagttaacataa 97  Q
    ||||||||||||||||||| |||   || ||||||||||||||||||||||||  ||||||| |||||| ||||| |||||    
T  9599343 taagtgattgaagaaagattaaacctcataatgatttagtggagggggaaacatatgatatacgtgtagcagttagcataa 9599423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 608
Target Start/End: Original strand, 9587328 - 9587372
Alignment:
Q  564 aaaagcttttgatacgactccttctccaaatcaagagaaacaatg 608  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  9587328 aaaagattttgatacgactcgttctccaaatcaagagaaacaatg 9587372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 1437907 - 1437864
Alignment:
Q  564 aaaagcttttgatacgactccttctccaaatcaagagaaacaat 607  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  1437907 aaaagcttttgatacgtctccttctctaaatcaagagaaacaat 1437864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 565 - 608
Target Start/End: Complemental strand, 43991870 - 43991827
Alignment:
Q  565 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 608  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  43991870 aaagcttttgataagactccgtctccaaatcaagagaaacaatg 43991827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 2442298 - 2442260
Alignment:
Q  201 cattaagaacaaggtgatattaaactctcaacatagact 239  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2442298 cattaagaacaaggtgatattaaactctcaacagagact 2442260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 783590 - 783629
Alignment:
Q  200 acattaagaacaaggtgatattaaactctcaacatagact 239  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  783590 acattaagaacaaggtgatatcaaactctcaacgtagact 783629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 607
Target Start/End: Complemental strand, 2456141 - 2456106
Alignment:
Q  572 ttgatacgactccttctccaaatcaagagaaacaat 607  Q
    |||||| |||||||||||||||||||||||||||||    
T  2456141 ttgatatgactccttctccaaatcaagagaaacaat 2456106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 601
Target Start/End: Original strand, 2659297 - 2659332
Alignment:
Q  566 aagcttttgatacgactccttctccaaatcaagaga 601  Q
    |||||||||||||||||||||||| |||||||||||    
T  2659297 aagcttttgatacgactccttctctaaatcaagaga 2659332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 12218313 - 12218278
Alignment:
Q  198 taacattaagaacaaggtgatattaaactctcaaca 233  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12218313 taacattaagaacaaggtgatatcaaactctcaaca 12218278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 13526884 - 13526841
Alignment:
Q  196 aataacattaagaacaaggtgatattaaactctcaacatagact 239  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||    
T  13526884 aataacgttaagaacaaggtgatatcaaactctcaacgtagact 13526841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 607
Target Start/End: Original strand, 771649 - 771691
Alignment:
Q  565 aaagcttttgatacgactccttctccaaatcaagagaaacaat 607  Q
    |||| |||||||| ||||| |||||||||||||||||||||||    
T  771649 aaagattttgatatgactcattctccaaatcaagagaaacaat 771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 730
Target Start/End: Original strand, 771769 - 771811
Alignment:
Q  688 aatatggtaagtcttgtatcctcctccaagaatccgtacccag 730  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||    
T  771769 aatatgggaagtcttgtatccttctccaagaatctgtacccag 771811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 554 - 608
Target Start/End: Original strand, 14888745 - 14888799
Alignment:
Q  554 attaggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaatg 608  Q
    ||||||||  ||||| |||||||||||||  ||||||||||||||||||| ||||    
T  14888745 attaggctgcaaaagattttgatacgacttgttctccaaatcaagagaaaaaatg 14888799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 989667 - 989634
Alignment:
Q  198 taacattaagaacaaggtgatattaaactctcaa 231  Q
    ||||||||| ||||||||||||||||||||||||    
T  989667 taacattaaaaacaaggtgatattaaactctcaa 989634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 43992245 - 43992212
Alignment:
Q  199 aacattaagaacaaggtgatattaaactctcaac 232  Q
    |||||||||||||||||||||| |||||||||||    
T  43992245 aacattaagaacaaggtgatatcaaactctcaac 43992212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 608
Target Start/End: Complemental strand, 33020217 - 33020180
Alignment:
Q  571 tttgatacgactccttctccaaatcaagagaaacaatg 608  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33020217 tttgatacgactccttctccaaatcaagagaaacaatg 33020180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 565 - 608
Target Start/End: Complemental strand, 33026564 - 33026521
Alignment:
Q  565 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 608  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  33026564 aaagcgtttgatacaactccttctccaaatcaagagaaacaatg 33026521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 565 - 608
Target Start/End: Complemental strand, 33038061 - 33038018
Alignment:
Q  565 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 608  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  33038061 aaagcgtttgatacgattccttctccaaatcaagagaaacaatg 33038018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 607
Target Start/End: Original strand, 7160913 - 7160946
Alignment:
Q  574 gatacgactccttctccaaatcaagagaaacaat 607  Q
    |||| |||||||||||||||||||||||||||||    
T  7160913 gataagactccttctccaaatcaagagaaacaat 7160946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 36577668 - 36577635
Alignment:
Q  198 taacattaagaacaaggtgatattaaactctcaa 231  Q
    ||||||||||| ||||||||||||||||||||||    
T  36577668 taacattaagaccaaggtgatattaaactctcaa 36577635  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 607
Target Start/End: Complemental strand, 27755596 - 27755555
Alignment:
Q  566 aagcttttgatacgactccttctccaaatcaagagaaacaat 607  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  27755596 aagcttttcatacaactccttctccaaatcaagagaaacaat 27755555  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 24723253 - 24723213
Alignment:
Q  567 agcttttgatacgactccttctccaaatcaagagaaacaat 607  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  24723253 agctcttgataagactccttctccaaatcaagagaaacaat 24723213  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 608
Target Start/End: Complemental strand, 89211 - 89013
Alignment:
Q  410 catgtaaggaacacggtacaatttattccgtggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaatgatgtac 509  Q
    |||||||||||||  |||||||||| |||  | ||||| |||  |||| || ||||||| ||||||||| | |||| | | |  ||||| || |||| ||    
T  89211 catgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaatatatcactacttgtaaagatgcac 89112  T
Q  510 aagcgatccatcaacaccctcaaggtccaactatttgtct-ccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaatg 608  Q
    |||| |||| | ||||||| ||||||||| | | | || | |||||| ||| | |  |||||||| ||||||||| |||||||||||||| |||||||||    
T  89111 aagcaatccgttaacacccccaaggtcca-caactcgttttccaaatcaggatgtggaagctttttatacgactcattctccaaatcaagtgaaacaatg 89013  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 9825298 - 9825337
Alignment:
Q  198 taacattaagaacaaggtgatattaaactctcaacataga 237  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  9825298 taacattaagaacaaggcgatatcaaactctcaacataga 9825337  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 9819612 - 9819646
Alignment:
Q  198 taacattaagaacaaggtgatattaaactctcaac 232  Q
    ||||||||||||||||||||||| |||||||||||    
T  9819612 taacattaagaacaaggtgatatcaaactctcaac 9819646  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 607
Target Start/End: Original strand, 51221347 - 51221390
Alignment:
Q  564 aaaagcttttgatacgactccttctccaaatcaagagaaacaat 607  Q
    |||||||||||||| || ||||||| ||||||||||||||||||    
T  51221347 aaaagcttttgataggattccttcttcaaatcaagagaaacaat 51221390  T

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