View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_11 (Length: 312)
Name: NF6136_high_11
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 21393862 - 21394051
Alignment:
| Q |
1 |
aacgaaagaaaacagagtgaagcaacaatggagttacggttttcatcacacttcattttcaccattctcgctatcacgcttctttttgctttcaccaatg |
100 |
Q |
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| T |
21393862 |
aacgaaagaaaacagagtgaagcaacaatggagttacggttttcatcacacttcattttcaccattctcgctatcacgcttctttttgctttcaccaatg |
21393961 |
T |
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| Q |
101 |
ctattgattctaatgaatcacggtaattttttaaacttcatcttcaagcttcttcatctctgtttcatgagctttaagaaaattctctca |
190 |
Q |
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| T |
21393962 |
ctattgattctaatgaatcacggtaattttttaaacttcatcttcaagcttcttcatctctgtttcatgagctttaagaaaattctctca |
21394051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 21394095 - 21394157
Alignment:
| Q |
234 |
cataattagaatgtgactgtgagaatgtgtttgtaacgtgatgacagtgttgtgaatggagaa |
296 |
Q |
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| T |
21394095 |
cataattagaatgtgactgtgagaatgtgtttgtaacgtgatgatagtgttgtgaatggagaa |
21394157 |
T |
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