View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_12 (Length: 306)
Name: NF6136_high_12
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 47 - 288
Target Start/End: Original strand, 46818630 - 46818871
Alignment:
| Q |
47 |
cttgtacaccataatattataatctaatctatgtagttcaaccttctaggatccttaacctcaattctccaatgtccatcagagaaaatagcatttcttg |
146 |
Q |
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| T |
46818630 |
cttgtacaccatgttattataatctaatctatgtagttcaaccttctaggatccttaacctcaattctccaatgtccatcagagaaaatagcatttcttg |
46818729 |
T |
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| Q |
147 |
ctatttttctattcttgacaattctttcatttgattgctttgtaagggaacaatatgattgcaaatgttttggcatagtatcataaactttccaccacac |
246 |
Q |
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| T |
46818730 |
ctatttttctattcttgacaattctttcatttgattgctttgtaagggaacaatatgattgcaaatgttttggcatagtatcataaactttccaccatac |
46818829 |
T |
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| Q |
247 |
ttcattagctgagtcactagcaaatatatcataaccttgcat |
288 |
Q |
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| T |
46818830 |
ttcattagctgagtcactagcaaatatatcataaccttgcat |
46818871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 36882960 - 36882892
Alignment:
| Q |
89 |
cttctaggatccttaacctcaattctccaatgtccatcagagaaaatagcatttcttgctatttttcta |
157 |
Q |
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| T |
36882960 |
cttctaggatccttaaccttaatcttccaatgcccatcactcaaattagcatttcttgctctttttcta |
36882892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 36882853 - 36882804
Alignment:
| Q |
196 |
acaatatgattgcaaatgttttggcatagtatcataaactttccaccaca |
245 |
Q |
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| T |
36882853 |
acaatatgcttgcaacttttgtggcatagtatcataaaccttccaccaca |
36882804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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