View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6136_high_16 (Length: 269)

Name: NF6136_high_16
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6136_high_16
NF6136_high_16
[»] chr2 (4 HSPs)
chr2 (1-259)||(29746770-29747027)
chr2 (76-148)||(17862954-17863025)
chr2 (65-127)||(16879305-16879366)
chr2 (65-127)||(16991438-16991499)
[»] chr6 (3 HSPs)
chr6 (76-142)||(10863362-10863427)
chr6 (64-148)||(15594568-15594651)
chr6 (101-148)||(6634272-6634320)
[»] chr5 (3 HSPs)
chr5 (66-148)||(21098675-21098754)
chr5 (66-148)||(28739284-28739362)
chr5 (108-148)||(17304518-17304558)
[»] chr1 (2 HSPs)
chr1 (76-151)||(1945056-1945131)
chr1 (65-98)||(10216801-10216834)
[»] chr4 (3 HSPs)
chr4 (66-148)||(11042502-11042583)
chr4 (65-151)||(24854257-24854342)
chr4 (65-97)||(28085844-28085876)
[»] chr8 (1 HSPs)
chr8 (65-98)||(24716113-24716146)
[»] chr3 (1 HSPs)
chr3 (64-148)||(8677853-8677936)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 29747027 - 29746770
Alignment:
Q  1 tttcagatgatgtattttattggatgtacgaaacttgtattataaatgtatttatttggacaagtttatgttgtaaattttaatgtatttagtactaatg 100  Q
    ||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  29747027 tttcagatgctgtatgttattggatgtacgaa-cttgtattagaaatgtatttatttggacaagtttatgttgtaaattttaatgtatccagtactaatg 29746929  T
Q  101 tttaatacacatactaaatattctagacaatttagtatgagtgttacaaatgacatgtagatttttatgagtgatatttctaggatgtgtttcaattagt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||    
T  29746928 tttaatacacatactaaatattctagacaatttagtatgggtgttacaaatgacatgtatatttttatgagtgatatttataggatgtgtttctattagt 29746829  T
Q  201 tagttttggtggcttttttgctctgtggtaagatttgttaagtttcaaattagcctttg 259  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  29746828 tagttttggtggcttttttgctctgtggtaagactttttaagtttcaaattagcctttg 29746770  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 17863025 - 17862954
Alignment:
Q  76 aattttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagtgttaca 148  Q
    |||||||||||||  |||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  17863025 aattttaatgtatccagtagtaa-gtttaatacgcatgctaaatattctagacaatttagtatgggtgttaca 17862954  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 16879305 - 16879366
Alignment:
Q  65 tttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctaga 127  Q
    |||||||||||||||||||||||| ||||||||| |  |||| |||||||||||  |||||||    
T  16879305 tttatgttgtaaattttaatgtatctagtactaaag-ataatgcacatactaaactttctaga 16879366  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 16991438 - 16991499
Alignment:
Q  65 tttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctaga 127  Q
    |||||||||||||||||||||||| ||||||||| |  |||| |||||||||||  |||||||    
T  16991438 tttatgttgtaaattttaatgtatctagtactaaag-ataatgcacatactaaactttctaga 16991499  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 10863362 - 10863427
Alignment:
Q  76 aattttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagt 142  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  10863362 aattttaatgtattcagtactaa-gtttaatacgcatactaaatattctagacagtttagtatgagt 10863427  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 15594568 - 15594651
Alignment:
Q  64 gtttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctagaca-atttagtatgagtgttaca 148  Q
    |||||||||||||||||||||||||  ||||||||    ||| |||||| |||| ||||||||| | |||||||||| ||||||||    
T  15594568 gtttatgttgtaaattttaatgtatccagtactaa--aataacacacatgctaactattctagatacatttagtatgggtgttaca 15594651  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 6634320 - 6634272
Alignment:
Q  101 tttaatacacatactaaatattctagaca-atttagtatgagtgttaca 148  Q
    |||||| ||||| |||||||||||||||| |||||||||| ||||||||    
T  6634320 tttaatccacatgctaaatattctagacacatttagtatgggtgttaca 6634272  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 21098754 - 21098675
Alignment:
Q  66 ttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagtgttaca 148  Q
    ||||||||||| |||||||||||| ||||||||   |||| |  ||| |||||||||||||||||||||||||| ||||||||    
T  21098754 ttatgttgtaa-ttttaatgtattcagtactaag--ttaacatgcatgctaaatattctagacaatttagtatgggtgttaca 21098675  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 28739362 - 28739284
Alignment:
Q  66 ttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagtgttaca 148  Q
    ||||||||||| |||||||||||  ||||||||   ||||  ||||| ||||| |||||||||||||||||||||||||||||    
T  28739362 ttatgttgtaa-ttttaatgtatccagtactaag--ttaacgcacatgctaaa-attctagacaatttagtatgagtgttaca 28739284  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 17304518 - 17304558
Alignment:
Q  108 cacatactaaatattctagacaatttagtatgagtgttaca 148  Q
    ||||| |||||||||||||||| ||||||||| ||||||||    
T  17304518 cacattctaaatattctagacagtttagtatgtgtgttaca 17304558  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 1945056 - 1945131
Alignment:
Q  76 aattttaatgtatttagtacta-atgtttaatacacatactaaatattctagacaatttagtatgagtgttacaaat 151  Q
    ||||||||||||| |||||||  |||||||| || |||  |||||||| |||||||||||||||| |||||||||||    
T  1945056 aattttaatgtatctagtactttatgtttaacacccatt-taaatattatagacaatttagtatgggtgttacaaat 1945131  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 10216801 - 10216834
Alignment:
Q  65 tttatgttgtaaattttaatgtatttagtactaa 98  Q
    ||||||||||||||||||||||||| ||||||||    
T  10216801 tttatgttgtaaattttaatgtattcagtactaa 10216834  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 11042502 - 11042583
Alignment:
Q  66 ttatgttgtaaattttaatgtatttagtacta-atgtttaatacacatactaaatattctagacaatttagtatgagtgttaca 148  Q
    ||||||||||| |||||||| || || ||||  ||||||||||| | | |||||||||||| ||||||||||||||||||||||    
T  11042502 ttatgttgtaa-ttttaatgcatctaatactttatgtttaatactcgt-ctaaatattctaaacaatttagtatgagtgttaca 11042583  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 24854342 - 24854257
Alignment:
Q  65 tttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctagaca-atttagtatgagtgttacaaat 151  Q
    ||||||||||||||| ||||||||  ||||||||   ||||  ||||| |||||||||||| |||  ||||||||| |||||||||||    
T  24854342 tttatgttgtaaattataatgtatccagtactaa--gttaacccacatgctaaatattctaaacacgtttagtatgggtgttacaaat 24854257  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 28085876 - 28085844
Alignment:
Q  65 tttatgttgtaaattttaatgtatttagtacta 97  Q
    ||||||||||||||||||||||||| |||||||    
T  28085876 tttatgttgtaaattttaatgtattcagtacta 28085844  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 24716113 - 24716146
Alignment:
Q  65 tttatgttgtaaattttaatgtatttagtactaa 98  Q
    |||||||||||||||||||||||| |||||||||    
T  24716113 tttatgttgtaaattttaatgtatctagtactaa 24716146  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 8677936 - 8677853
Alignment:
Q  64 gtttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctaga-caatttagtatgagtgttaca 148  Q
    ||||||||||||| |||||||||||  |||||||| ||||||  ||||| ||||||||||||||  ||||||||||| || |||||    
T  8677936 gtttatgttgtaa-ttttaatgtatcaagtactaa-gtttaacgcacatgctaaatattctagataaatttagtatgggttttaca 8677853  T

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