View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_17 (Length: 263)
Name: NF6136_high_17
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 11208937 - 11208700
Alignment:
| Q |
19 |
atgagcgtaataattcctaggaataccacgattccgaccaatatggaacatgtatacaccaccagtgaacccaaccaaaatagtttatcaatttctgttt |
118 |
Q |
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| T |
11208937 |
atgagcgtaataattcctaggaataccacgattcctaccaatatggaagatgtatacaccaccagtgaacccaaccaaaatagtttatcaatttccgttt |
11208838 |
T |
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| Q |
119 |
atgagggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggtcaa |
218 |
Q |
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| T |
11208837 |
atgagggtgagaggcaaacaactaaggacaacaacttgctaggatcttttgagtttgaaattcctccatgtccaaaaggtgatcaaaaattcgtggtcaa |
11208738 |
T |
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| Q |
219 |
cttccaaattaacgatgatggcatcttagacgtctctg |
256 |
Q |
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| T |
11208737 |
cttccaaattaacgatgatggcatcttagacgtctctg |
11208700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 11170111 - 11169878
Alignment:
| Q |
23 |
gcgtaataattcctaggaataccacgattccgaccaatatggaacatgtatacaccaccagtgaacccaaccaaaatagtt-tatcaatttctgtttatg |
121 |
Q |
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| T |
11170111 |
gcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaa-agttatttcgattcatgtttatg |
11170013 |
T |
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| Q |
122 |
agggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggtcaactt |
221 |
Q |
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| T |
11170012 |
agggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaactt |
11169913 |
T |
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| Q |
222 |
ccaaattaacgatgatggcatcttagacgtctctg |
256 |
Q |
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| T |
11169912 |
ccaaattaacgatgatggcatcttagacgtctctg |
11169878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 11275402 - 11275272
Alignment:
| Q |
116 |
tttatgagggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggt |
215 |
Q |
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| T |
11275402 |
tttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctccatgtccagtagatgttcctcaattggtggt |
11275303 |
T |
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| Q |
216 |
caacttccaaattaacgatgatggcatctta |
246 |
Q |
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| T |
11275302 |
caacttccaaattgacaatgatggcatctta |
11275272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 11155741 - 11155693
Alignment:
| Q |
114 |
tgtttatgagggtgagaggcaaacaactaaggaaaacaacttgcttgga |
162 |
Q |
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| T |
11155741 |
tgtttatgaaggtgagaggaaaataactagggaaaacaacttgcttgga |
11155693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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