View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6136_high_18 (Length: 260)

Name: NF6136_high_18
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6136_high_18
NF6136_high_18
[»] chr5 (42 HSPs)
chr5 (136-244)||(8032258-8032367)
chr5 (143-243)||(14111891-14111993)
chr5 (28-69)||(8032150-8032191)
chr5 (149-205)||(32842036-32842093)
chr5 (147-203)||(38692849-38692905)
chr5 (146-193)||(38640719-38640766)
chr5 (143-196)||(15799219-15799273)
chr5 (143-203)||(20891607-20891668)
chr5 (207-243)||(31929119-31929155)
chr5 (207-243)||(32841966-32842002)
chr5 (150-205)||(1350375-1350430)
chr5 (150-204)||(26095092-26095147)
chr5 (143-193)||(26319111-26319162)
chr5 (143-205)||(27212702-27212765)
chr5 (146-203)||(4064786-4064844)
chr5 (143-196)||(28083451-28083505)
chr5 (143-203)||(6156725-6156786)
chr5 (143-203)||(31221405-31221466)
chr5 (143-203)||(38871665-38871726)
chr5 (207-243)||(4064715-4064751)
chr5 (142-205)||(13908540-13908604)
chr5 (207-243)||(15799315-15799351)
chr5 (207-243)||(20891703-20891739)
chr5 (207-243)||(25747115-25747151)
chr5 (207-243)||(29862702-29862738)
chr5 (207-243)||(31221334-31221370)
chr5 (207-243)||(38871761-38871797)
chr5 (208-243)||(6156822-6156857)
chr5 (208-243)||(13908639-13908674)
chr5 (143-193)||(24203760-24203811)
chr5 (209-243)||(16429164-16429198)
chr5 (143-193)||(37094992-37095042)
chr5 (143-203)||(15957743-15957804)
chr5 (208-241)||(26095183-26095216)
chr5 (147-203)||(29862610-29862667)
chr5 (143-203)||(38372303-38372364)
chr5 (143-203)||(39524770-39524831)
chr5 (207-243)||(28083373-28083409)
chr5 (207-243)||(33487700-33487736)
chr5 (207-243)||(37183776-37183812)
chr5 (207-243)||(38372399-38372435)
chr5 (207-243)||(38692778-38692814)
[»] chr6 (19 HSPs)
chr6 (143-203)||(7412860-7412920)
chr6 (143-205)||(24604426-24604489)
chr6 (143-203)||(2813290-2813351)
chr6 (143-203)||(17264442-17264503)
chr6 (143-198)||(5699590-5699646)
chr6 (142-204)||(9905149-9905212)
chr6 (143-203)||(32035145-32035206)
chr6 (207-243)||(1945525-1945561)
chr6 (151-203)||(1945596-1945648)
chr6 (17-69)||(9905025-9905077)
chr6 (207-243)||(9905242-9905278)
chr6 (207-243)||(14587555-14587591)
chr6 (207-243)||(23406924-23406960)
chr6 (143-203)||(5638894-5638955)
chr6 (207-243)||(2539579-2539615)
chr6 (207-243)||(3717278-3717314)
chr6 (207-243)||(4508297-4508333)
chr6 (207-243)||(5699693-5699729)
chr6 (147-205)||(29289690-29289750)
[»] chr1 (35 HSPs)
chr1 (142-205)||(28866695-28866759)
chr1 (142-205)||(34006290-34006354)
chr1 (143-205)||(6223801-6223864)
chr1 (143-203)||(32817677-32817738)
chr1 (207-243)||(15069836-15069872)
chr1 (207-243)||(24472822-24472858)
chr1 (143-193)||(49786301-49786351)
chr1 (143-193)||(24471390-24471442)
chr1 (146-198)||(34162792-34162845)
chr1 (143-203)||(49677515-49677576)
chr1 (207-243)||(6223741-6223777)
chr1 (211-243)||(8364140-8364172)
chr1 (207-243)||(17000506-17000542)
chr1 (142-205)||(26723553-26723612)
chr1 (207-243)||(28866625-28866661)
chr1 (207-243)||(34006388-34006424)
chr1 (142-193)||(40908010-40908062)
chr1 (207-243)||(41584660-41584696)
chr1 (207-243)||(42546095-42546131)
chr1 (207-243)||(45046845-45046881)
chr1 (143-193)||(30829542-30829593)
chr1 (143-193)||(43319272-43319323)
chr1 (150-205)||(3561400-3561457)
chr1 (143-197)||(15069913-15069969)
chr1 (214-243)||(32817606-32817635)
chr1 (143-203)||(33611476-33611537)
chr1 (143-203)||(40650741-40650802)
chr1 (143-203)||(42545999-42546060)
chr1 (214-243)||(52744838-52744867)
chr1 (207-243)||(27794959-27794995)
chr1 (207-243)||(34162717-34162753)
chr1 (207-243)||(40907929-40907965)
chr1 (143-198)||(41584741-41584797)
chr1 (207-243)||(44573092-44573128)
chr1 (207-243)||(45567885-45567921)
[»] chr7 (26 HSPs)
chr7 (143-205)||(6467729-6467792)
chr7 (143-203)||(3936140-3936201)
chr7 (143-203)||(8154931-8154992)
chr7 (143-199)||(31985588-31985645)
chr7 (147-205)||(6467205-6467264)
chr7 (147-205)||(24690398-24690457)
chr7 (143-203)||(24042254-24042315)
chr7 (147-203)||(28230534-28230591)
chr7 (143-203)||(47202526-47202587)
chr7 (207-243)||(9151924-9151960)
chr7 (207-243)||(28230463-28230499)
chr7 (207-243)||(36468532-36468568)
chr7 (207-243)||(42925636-42925672)
chr7 (208-243)||(5278393-5278428)
chr7 (17-64)||(7115477-7115524)
chr7 (143-197)||(19225670-19225725)
chr7 (143-203)||(31643073-31643134)
chr7 (143-203)||(37518361-37518422)
chr7 (143-203)||(42925707-42925768)
chr7 (207-243)||(3936236-3936272)
chr7 (207-243)||(19225593-19225629)
chr7 (207-243)||(24042183-24042219)
chr7 (150-205)||(30861142-30861198)
chr7 (207-243)||(36408499-36408535)
chr7 (207-243)||(42865097-42865133)
chr7 (207-243)||(43185910-43185946)
[»] chr4 (39 HSPs)
chr4 (143-243)||(25538974-25539075)
chr4 (143-205)||(3703314-3703377)
chr4 (142-204)||(8106431-8106494)
chr4 (143-203)||(2506097-2506158)
chr4 (143-203)||(19835560-19835621)
chr4 (143-203)||(25752510-25752571)
chr4 (143-203)||(46440340-46440401)
chr4 (207-243)||(2506026-2506062)
chr4 (207-243)||(8106529-8106565)
chr4 (17-64)||(8106306-8106353)
chr4 (159-205)||(41323157-41323203)
chr4 (143-203)||(25491461-25491522)
chr4 (143-203)||(40703704-40703765)
chr4 (207-243)||(19835656-19835692)
chr4 (207-243)||(25752439-25752475)
chr4 (211-243)||(27181515-27181547)
chr4 (207-243)||(31582417-31582453)
chr4 (143-203)||(32441851-32441911)
chr4 (143-179)||(38416605-38416641)
chr4 (207-243)||(40703800-40703836)
chr4 (207-243)||(52089321-52089357)
chr4 (207-243)||(53894020-53894056)
chr4 (207-243)||(55052614-55052650)
chr4 (143-193)||(23523946-23523997)
chr4 (209-243)||(25140917-25140951)
chr4 (146-203)||(55052685-55052743)
chr4 (207-244)||(14474205-14474242)
chr4 (143-203)||(17933203-17933264)
chr4 (143-203)||(29822659-29822720)
chr4 (143-203)||(31582488-31582549)
chr4 (207-243)||(38416963-38417000)
chr4 (143-203)||(38536210-38536271)
chr4 (143-203)||(41413166-41413227)
chr4 (207-243)||(7931793-7931829)
chr4 (207-243)||(17933132-17933168)
chr4 (207-243)||(25491390-25491426)
chr4 (207-243)||(38536306-38536342)
chr4 (207-243)||(41323087-41323123)
chr4 (207-243)||(48319059-48319095)
[»] chr3 (36 HSPs)
chr3 (143-204)||(30721870-30721933)
chr3 (143-205)||(51258434-51258497)
chr3 (143-203)||(47739998-47740059)
chr3 (150-205)||(5127964-5128019)
chr3 (143-193)||(47302051-47302102)
chr3 (143-203)||(49096293-49096354)
chr3 (143-203)||(50716284-50716345)
chr3 (143-203)||(50796502-50796563)
chr3 (207-243)||(3352061-3352097)
chr3 (150-205)||(29048381-29048437)
chr3 (207-243)||(35142202-35142238)
chr3 (207-243)||(38977743-38977779)
chr3 (207-243)||(49096222-49096258)
chr3 (207-243)||(51258531-51258567)
chr3 (147-201)||(51816280-51816335)
chr3 (209-243)||(33842069-33842103)
chr3 (143-203)||(3352132-3352193)
chr3 (143-203)||(3902872-3902933)
chr3 (143-203)||(34821409-34821470)
chr3 (143-203)||(35142106-35142167)
chr3 (143-203)||(43473035-43473096)
chr3 (207-244)||(47739926-47739963)
chr3 (143-203)||(51540680-51540741)
chr3 (207-243)||(501136-501172)
chr3 (208-236)||(5127901-5127929)
chr3 (207-243)||(28873133-28873169)
chr3 (207-243)||(29035842-29035878)
chr3 (207-243)||(33438649-33438685)
chr3 (207-243)||(34821338-34821374)
chr3 (152-203)||(39149850-39149902)
chr3 (207-243)||(39149937-39149973)
chr3 (207-243)||(47123154-47123190)
chr3 (207-243)||(47769390-47769426)
chr3 (207-243)||(50716380-50716416)
chr3 (207-243)||(50796431-50796467)
chr3 (207-243)||(51540609-51540645)
[»] chr2 (29 HSPs)
chr2 (143-203)||(25217852-25217912)
chr2 (142-205)||(41203246-41203310)
chr2 (146-205)||(38066733-38066792)
chr2 (143-203)||(4268299-4268360)
chr2 (145-197)||(15995180-15995233)
chr2 (143-203)||(45153852-45153913)
chr2 (207-243)||(17474789-17474825)
chr2 (207-243)||(41203176-41203212)
chr2 (143-205)||(34517133-34517195)
chr2 (143-203)||(33452504-33452565)
chr2 (143-203)||(41854960-41855021)
chr2 (143-203)||(42894409-42894470)
chr2 (207-243)||(5507547-5507583)
chr2 (207-243)||(32187859-32187895)
chr2 (207-243)||(39447290-39447326)
chr2 (208-243)||(15995103-15995138)
chr2 (147-205)||(30763679-30763737)
chr2 (143-203)||(17474860-17474921)
chr2 (143-203)||(32187930-32187991)
chr2 (143-203)||(36875017-36875078)
chr2 (147-180)||(38308879-38308912)
chr2 (143-203)||(39447194-39447255)
chr2 (214-243)||(45153781-45153810)
chr2 (176-204)||(19110075-19110103)
chr2 (207-243)||(25217765-25217801)
chr2 (143-179)||(33366959-33366995)
chr2 (207-243)||(33452433-33452469)
chr2 (17-69)||(38308980-38309032)
chr2 (207-243)||(44465717-44465753)
[»] scaffold0508 (1 HSPs)
scaffold0508 (143-203)||(3461-3522)
[»] scaffold0027 (2 HSPs)
scaffold0027 (143-203)||(142029-142090)
scaffold0027 (207-243)||(141958-141994)
[»] chr8 (31 HSPs)
chr8 (143-203)||(44106255-44106316)
chr8 (150-205)||(1076595-1076650)
chr8 (147-197)||(36980623-36980673)
chr8 (143-203)||(3094713-3094774)
chr8 (143-203)||(8885519-8885580)
chr8 (143-203)||(31519958-31520019)
chr8 (146-179)||(35676629-35676662)
chr8 (143-203)||(40994824-40994885)
chr8 (207-243)||(8885448-8885484)
chr8 (207-243)||(9073632-9073668)
chr8 (207-243)||(14164052-14164088)
chr8 (17-69)||(17120082-17120134)
chr8 (207-243)||(27927936-27927972)
chr8 (207-243)||(40392664-40392700)
chr8 (207-243)||(40994920-40994956)
chr8 (207-243)||(42280886-42280922)
chr8 (145-203)||(42280957-42281016)
chr8 (207-242)||(44106351-44106386)
chr8 (143-196)||(9073536-9073590)
chr8 (146-203)||(16310634-16310692)
chr8 (143-193)||(36404232-36404281)
chr8 (146-203)||(37248593-37248651)
chr8 (209-243)||(41530805-41530839)
chr8 (143-203)||(27928007-27928068)
chr8 (207-243)||(3094813-3094849)
chr8 (207-243)||(16310727-16310763)
chr8 (152-203)||(21004430-21004482)
chr8 (207-243)||(28916903-28916939)
chr8 (207-243)||(34853456-34853492)
chr8 (207-243)||(36165833-36165869)
chr8 (207-243)||(37248686-37248722)
[»] scaffold0137 (1 HSPs)
scaffold0137 (143-196)||(9570-9624)
[»] scaffold0006 (2 HSPs)
scaffold0006 (207-243)||(59488-59524)
scaffold0006 (207-243)||(59965-60001)
[»] scaffold0182 (1 HSPs)
scaffold0182 (215-243)||(23238-23266)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 8032258 - 8032367
Alignment:
Q  136 ggcacactacatgatttttccggattacataatccgaacacc-cctaaacaccctttttcaagggaaaaactcaaattttaaacatgtttgtaacatgga 234  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8032258 ggcacattacatgatttttccggattacataatccgaacacctcctaaacaccctttttcaagggaaaaactcaaattttaaacatgtttataacatgga 8032357  T
Q  235 tagtcattta 244  Q
    ||||||||||    
T  8032358 tagtcattta 8032367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 14111891 - 14111993
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaaa-ctcaaattttaaacatgtttgtaacatggatagtca 240  Q
    |||||||| |||  ||||||||||||| ||| | |||||||||||||||||||||| | |  | | ||||||||||| ||||||||||||||||||||||    
T  14111891 tacatgatgtttttggattacataatctgaaaatcccctaaacaccctttttcaagtgtatcagcacaaattttaaatatgtttgtaacatggatagtca 14111990  T
Q  241 ttt 243  Q
    |||    
T  14111991 ttt 14111993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 8032150 - 8032191
Alignment:
Q  28 gattttaaaattcggattcagtttttcctttgttatatggtg 69  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8032150 gattttaaaattcggattcagtttttcctttgttatatggtg 8032191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 32842093 - 32842036
Alignment:
Q  149 atttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32842093 atttttcaagattacataatccgaacaccccataaacaccctttttcaagggaaaaac 32842036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 38692905 - 38692849
Alignment:
Q  147 tgatttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  38692905 tgatgtttccggattacataatccggaaacccctaaacaccctttttcaaggtaaaa 38692849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 38640719 - 38640766
Alignment:
Q  146 atgatttttccggattacataatccgaacacccctaaacacccttttt 193  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  38640719 atgatttattcggattacataatccgaacacccctaaacacccttttt 38640766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 15799219 - 15799273
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaa 196  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||||||||||    
T  15799219 tacatgatgtttccggattacataatccgaaaaccccctaaacaccctttttcaa 15799273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 20891607 - 20891668
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||| ||||||||||||||| | ||||||||||||||||||||||| ||||    
T  20891607 tacatgatgtttccgaattacataatccgaaaaccccctaaacaccctttttcaaggtaaaa 20891668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 31929155 - 31929119
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  31929155 caaattttaaacatgtttgtaacatggatagtcattt 31929119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 32842002 - 32841966
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  32842002 caaattttaaacatgtttgtaacatggatagtcattt 32841966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 1350430 - 1350375
Alignment:
Q  150 tttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaaac 205  Q
    |||||||  |||| |||||||||||||||||||||| | |||||||||||||||||    
T  1350430 tttttccaaattatataatccgaacacccctaaacatcttttttcaagggaaaaac 1350375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 26095092 - 26095147
Alignment:
Q  150 tttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaa 204  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  26095092 ttttttcggattacataatccgaacaccccataaacactctttttcaaaggaaaaa 26095147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 26319111 - 26319162
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacacccttttt 193  Q
    |||||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  26319111 tacatgatgtttccggattacataatccgaaaaccccctaaacacccttttt 26319162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 27212702 - 27212765
Alignment:
Q  143 tacatgatttttccggattacataatccgaacac-ccctaaacaccctttttcaagggaaaaac 205  Q
    |||||||||||| |||||||||||| | |||||| |||| |||||||||||| |||||||||||    
T  27212702 tacatgattttttcggattacataaccagaacacaccctgaacaccctttttgaagggaaaaac 27212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 4064844 - 4064786
Alignment:
Q  146 atgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    ||||| |||||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  4064844 atgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 4064786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 28083505 - 28083451
Alignment:
Q  143 tacatgatttttccggattacataatccgaacaccc-ctaaacaccctttttcaa 196  Q
    |||||||| |||||||||||||||||||| | |||| ||||||||||||||||||    
T  28083505 tacatgatatttccggattacataatccggaaaccctctaaacaccctttttcaa 28083451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 6156725 - 6156786
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||||| |||||||| ||||    
T  6156725 tacatgatgtttccggattacataatccggaaaccccctaaacaccctctttcaaggtaaaa 6156786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 31221466 - 31221405
Alignment:
Q  143 tacatgatttttccggattacataatccgaacaccc-ctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||| ||||||||||||||| | |||| |||||||||||||||||||| ||||    
T  31221466 tacatgatgtttctggattacataatccggaaaccctctaaacaccctttttcaaggtaaaa 31221405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 38871665 - 38871726
Alignment:
Q  143 tacatgatttttccggattacataatccgaacaccc-ctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||||||| |||| ||||||| | |||||||||| ||||    
T  38871665 tacatgatgtttccggattacataatccgaaaaccctctaaacatcttttttcaaggtaaaa 38871726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 4064751 - 4064715
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  4064751 caaattctaaacatgtttgtaacatggatagtcattt 4064715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 13908540 - 13908604
Alignment:
Q  142 ctacatgatttttccggattacataatccgaacacc-cctaaacaccctttttcaagggaaaaac 205  Q
    |||| |||||||| ||||||| |||||  ||||||| ||||||||| ||||||||||||||||||    
T  13908540 ctacttgattttttcggattatataatttgaacacctcctaaacactctttttcaagggaaaaac 13908604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 15799315 - 15799351
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  15799315 caaattctaaacatgtttgtaacatggatagtcattt 15799351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 20891703 - 20891739
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  20891703 caaattctaaacatgtttgtaacatggatagtcattt 20891739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 25747115 - 25747151
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25747115 caaattctaaacatgtttgtaacatggatagtcattt 25747151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 29862702 - 29862738
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  29862702 caaattctaaacatgtttgtaacatggatagtcattt 29862738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 31221370 - 31221334
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31221370 caaattataaacatgtttgtaacatggatagtcattt 31221334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 38871761 - 38871797
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  38871761 caaattctaaacatgtttgtaacatggatagtcattt 38871797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 6156822 - 6156857
Alignment:
Q  208 aaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||| ||||||||||||||||||||||||||||||    
T  6156822 aaattctaaacatgtttgtaacatggatagtcattt 6156857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 13908639 - 13908674
Alignment:
Q  208 aaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13908639 aaattttaaacatgtttgtaacacggatagtcattt 13908674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 24203811 - 24203760
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacacccttttt 193  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||    
T  24203811 tacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 24203760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 16429164 - 16429198
Alignment:
Q  209 aattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||| ||||||||||||||||||||||||||||||    
T  16429164 aattctaaacatgtttgtaacatggatagtcattt 16429198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 37095042 - 37094992
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccctaaacacccttttt 193  Q
    |||||||| ||||||||||||  |||||||| |||| ||||||||||||||    
T  37095042 tacatgatgtttccggattaccaaatccgaaaacccttaaacacccttttt 37094992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 15957743 - 15957804
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||| ||||||| |||  ||||||||||||| ||||||||| ||||    
T  15957743 tacatgatgtttccggattaaataatccggaaaccccctaaacacccattttcaaggtaaaa 15957804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 26095183 - 26095216
Alignment:
Q  208 aaattttaaacatgtttgtaacatggatagtcat 241  Q
    ||||| ||||||||||||||||||||||||||||    
T  26095183 aaattctaaacatgtttgtaacatggatagtcat 26095216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 29862610 - 29862667
Alignment:
Q  147 tgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||| ||||||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  29862610 tgatgtttccggattacataatccggaaaccccctaaacaccatttttcaaggtaaaa 29862667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 38372303 - 38372364
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||| || | ||||| |||| |||||||||||||| ||||    
T  38372303 tacatgatgtttccggattacataattcggaaaccccttaaataccctttttcaaggtaaaa 38372364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 39524770 - 39524831
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||| ||||||||||||| || | ||||| ||||||||||||||||||| ||||    
T  39524770 tacatgatgttttcggattacataattcggaaaccccctaaacaccctttttcaaggtaaaa 39524831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 28083409 - 28083373
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  28083409 caaattataaacatatttgtaacatggatagtcattt 28083373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 33487700 - 33487736
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||| |||||||||||||||||||||||||    
T  33487700 caaattctaaaaatgtttgtaacatggatagtcattt 33487736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 37183812 - 37183776
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||| |||||||||||||||||||||||||    
T  37183812 caaattctaaatatgtttgtaacatggatagtcattt 37183776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 38372399 - 38372435
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  38372399 caaattctaaacatgtttgttacatggatagtcattt 38372435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 38692814 - 38692778
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  38692814 caaattctaaacatgtttgtaacatggataatcattt 38692778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 7412860 - 7412920
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  7412860 tacatgatgtttccggattacataatccgaaaacccctaaacaccctttttcaaggtaaaa 7412920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 24604489 - 24604426
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    |||||||||| | |||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  24604489 tacatgatttcttcggattacataatccgaacaccccttaaacaccatttttcaagggaaaaac 24604426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 2813351 - 2813290
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  2813351 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 2813290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 17264442 - 17264503
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  17264442 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 17264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 5699590 - 5699646
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagg 198  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  5699590 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaagg 5699646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 9905149 - 9905212
Alignment:
Q  142 ctacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaaa 204  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| || |  |||||||||||||    
T  9905149 ctacgtgatttttccggattacataatccgaacaccccctaaacgccatcattcaagggaaaaa 9905212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 32035145 - 32035206
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||||||||| |||| ||||    
T  32035145 tacatgatgtttccggattacataatccggaaaccccctaaacacccttttttaaggtaaaa 32035206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 1945561 - 1945525
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  1945561 caaattctaaacatgtttgtaacatggatagtcattt 1945525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 1945648 - 1945596
Alignment:
Q  151 ttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||||||| |||||| |||||||||||||| || ||||||||| |||||    
T  1945648 ttttccggattatataatctgaacacccctaaaccccatttttcaagtgaaaa 1945596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 9905025 - 9905077
Alignment:
Q  17 tgtgcaatttggattttaaaattcggattcagtttttcctttgttatatggtg 69  Q
    ||||||||  ||||||||||||  |||||||||||||||||||||||| ||||    
T  9905025 tgtgcaatccggattttaaaatctggattcagtttttcctttgttatagggtg 9905077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 9905242 - 9905278
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9905242 caaattttaaacatgtttgtaacatggataatcattt 9905278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 14587591 - 14587555
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  14587591 caaattctaaacatgtttgtaacatggatagtcattt 14587555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 23406924 - 23406960
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  23406924 caaattctaaacatgtttgtaacatggatagtcattt 23406960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 5638894 - 5638955
Alignment:
Q  143 tacatgatttttccggattacataatccgaacac-ccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||  ||| |  |||||||||||||||||||||| ||||    
T  5638894 tacatgatgtttccggattacataatttgaaaaatccctaaacaccctttttcaaggtaaaa 5638955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 2539579 - 2539615
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| | ||||||||||||||||||||||||||||    
T  2539579 caaattctgaacatgtttgtaacatggatagtcattt 2539615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 3717314 - 3717278
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  3717314 caaattctaaacatgtctgtaacatggatagtcattt 3717278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 4508333 - 4508297
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  4508333 caaattctaaacatgtttgtaatatggatagtcattt 4508297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 5699693 - 5699729
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||| |||||||||||||||||||||||||    
T  5699693 caaattctaaatatgtttgtaacatggatagtcattt 5699729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 29289750 - 29289690
Alignment:
Q  147 tgatttttccggattacataatccgaacacccc-taaacacc-ctttttcaagggaaaaac 205  Q
    |||||||||||||||| |||||| ||||||||| ||||||||  ||||||||| |||||||    
T  29289750 tgatttttccggattatataatctgaacaccccttaaacaccattttttcaagtgaaaaac 29289690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 28866759 - 28866695
Alignment:
Q  142 ctacatgatttttccggattacataatccgaacaccc-ctaaacaccctttttcaagggaaaaac 205  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  28866759 ctacatgatttttccggattacataatctgaacacccgctaaacaccctttttaaagggaaaaac 28866695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 34006290 - 34006354
Alignment:
Q  142 ctacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    |||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  34006290 ctacatgatttttccggattacataatttgaacaccccataaacaccctttttcaagggaaaaac 34006354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 6223864 - 6223801
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    ||||||||||||  ||||||||||||||||||||||| |||||| |||||||||||| ||||||    
T  6223864 tacatgatttttttggattacataatccgaacaccccataaacatcctttttcaaggtaaaaac 6223801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 32817738 - 32817677
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||| ||||    
T  32817738 tacatgatgtttccagattacataatccgaaaaccccctaaacaccctttttcaaggtaaaa 32817677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 15069872 - 15069836
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  15069872 caaattttaaacatgtttgtaacatggatagtcattt 15069836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 24472858 - 24472822
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  24472858 caaattttaaacatgtttgtaacatggatagtcattt 24472822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 49786301 - 49786351
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccctaaacacccttttt 193  Q
    |||||||| |||||||||||||||||||| | ||||| |||||||||||||    
T  49786301 tacatgatgtttccggattacataatccggaaacccccaaacacccttttt 49786351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 24471442 - 24471390
Alignment:
Q  143 tacatgatttttccggattacataatccg--aacacccctaaacacccttttt 193  Q
    |||||||| ||||||||||||||||||||  ||| ||||||||||||||||||    
T  24471442 tacatgatgtttccggattacataatccgaaaacccccctaaacacccttttt 24471390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 34162845 - 34162792
Alignment:
Q  146 atgatttttccggattacataatccgaacacccc-taaacaccctttttcaagg 198  Q
    ||||| |||||||||||||||||||| | ||||| |||||||||||||||||||    
T  34162845 atgatgtttccggattacataatccggaaaccccctaaacaccctttttcaagg 34162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 49677515 - 49677576
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||| ||||||||| ||||    
T  49677515 tacatgatgtttccggattacataatccagaaaccccctaaacaccccttttcaaggtaaaa 49677576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 6223777 - 6223741
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6223777 caaattttaaatatgtttgtaacatggatagtcattt 6223741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 8364140 - 8364172
Alignment:
Q  211 ttttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||    
T  8364140 ttttaaacatgtttgtaacatggatagtcattt 8364172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 17000506 - 17000542
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  17000506 caaattctaaacatgtttgtaacatggatagtcattt 17000542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 26723612 - 26723553
Alignment:
Q  142 ctacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    ||||||||||||||||     ||||||||||||||||| |||||||||||||| |||||||||||    
T  26723612 ctacatgatttttccg-----cataatccgaacaccccctaaacacccttttttaagggaaaaac 26723553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 28866661 - 28866625
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||||||||||||||||||||||| |||||    
T  28866661 caaattttaaacatgtttgtaacatggatagccattt 28866625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 34006388 - 34006424
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34006388 caaattttaaagatgtttgtaacatggatagtcattt 34006424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 40908062 - 40908010
Alignment:
Q  142 ctacatgatttttccggattacataatccgaaca-cccctaaacacccttttt 193  Q
    ||||||||| ||| |||||||||||||||||| | ||||||||||||||||||    
T  40908062 ctacatgatgttttcggattacataatccgaaaaccccctaaacacccttttt 40908010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 41584696 - 41584660
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  41584696 caaattctaaacatgtttgtaacatggatagtcattt 41584660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 42546095 - 42546131
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  42546095 caaattctaaacatgtttgtaacatggatagtcattt 42546131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 45046881 - 45046845
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  45046881 caaattctaaacatgtttgtaacatggatagtcattt 45046845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 30829593 - 30829542
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacacccttttt 193  Q
    |||||||| ||| |||||||||||||||||| | ||||||||||||||||||    
T  30829593 tacatgatgttttcggattacataatccgaaaaccccctaaacacccttttt 30829542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 43319323 - 43319272
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacacccttttt 193  Q
    |||||||||||| |||||||||||||||||| | ||||||||||| ||||||    
T  43319323 tacatgattttttcggattacataatccgaaaaccccctaaacactcttttt 43319272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 3561457 - 3561400
Alignment:
Q  150 tttttccggattacataatccgaacaccc--ctaaacaccctttttcaagggaaaaac 205  Q
    ||||| ||||||| | |||| ||||||||  |||||||||||||||||||||||||||    
T  3561457 ttttttcggattatagaatctgaacaccctcctaaacaccctttttcaagggaaaaac 3561400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 15069969 - 15069913
Alignment:
Q  143 tacatgatttttccggattacataatccg--aacacccctaaacaccctttttcaag 197  Q
    |||||||| ||||||||||| ||||||||  ||| |||||||||||| |||||||||    
T  15069969 tacatgatgtttccggattatataatccggaaacccccctaaacaccatttttcaag 15069913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 32817635 - 32817606
Alignment:
Q  214 taaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||||||||||||||||||||||    
T  32817635 taaacatgtttgtaacatggatagtcattt 32817606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 33611537 - 33611476
Alignment:
Q  143 tacatgatttttccggattacataatc-cgaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||  |||  |||||||||||||||||| |||| ||||    
T  33611537 tacatgatgtttccggattacataatctggaaaccccctaaacacccttttttaaggtaaaa 33611476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 40650802 - 40650741
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| |||| ||||||||||||||| | ||||| |||||||| |||||||||| ||||    
T  40650802 tacatgatgtttctggattacataatccggaaaccccttaaacaccatttttcaaggtaaaa 40650741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 42545999 - 42546060
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||| |||| ||||||| ||||| ||| ||||||||||||||| ||||    
T  42545999 tacatgatgtttccggataacatgatccgaaaaccccctaagcaccctttttcaaggtaaaa 42546060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 52744867 - 52744838
Alignment:
Q  214 taaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||||||||||||||||||||||    
T  52744867 taaacatgtttgtaacatggatagtcattt 52744838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 27794959 - 27794995
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||| |||||| |||||||||||    
T  27794959 caaattttaaacatgtttataacatagatagtcattt 27794995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 34162753 - 34162717
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||||||||||||||||||||||| |||||    
T  34162753 caaattctaaacatgtttgtaacatggatagccattt 34162717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 40907965 - 40907929
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  40907965 caaattctaaacatgtttgtaacatggataatcattt 40907929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 41584797 - 41584741
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagg 198  Q
    |||||||| ||| ||||||||||||||| |||  |||||||||| ||||||||||||    
T  41584797 tacatgatgttttcggattacataatccggaaaccccctaaacatcctttttcaagg 41584741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 44573128 - 44573092
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  44573128 caaattataaacatgtttgtaacatgaatagtcattt 44573092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 45567921 - 45567885
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  45567921 caaattctaaacatgtttgtaatatggatagtcattt 45567885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 6467729 - 6467792
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6467729 tacatgatttgttcggattacataatccgaacaccccctaaacaccctttttcaagggaaaaac 6467792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 3936140 - 3936201
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| || | ||||||||||||||||||||||| ||||    
T  3936140 tacatgatgtttccggattacataatccaaaaaccccctaaacaccctttttcaaggtaaaa 3936201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 8154931 - 8154992
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||||||| |||| ||||    
T  8154931 tacatgatgtttccggattacataatccgaaaaccccctaaacacccttttttaaggtaaaa 8154992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 31985645 - 31985588
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaaggg 199  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||    
T  31985645 tacatgattttttcggattacataattcgaacaccccttaaacaccatttttcaaggg 31985588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 6467264 - 6467205
Alignment:
Q  147 tgatttttccggattacataatccgaacaccc-ctaaacaccctttttcaagggaaaaac 205  Q
    |||||||||||||||| | ||||||||||||| ||||||| | |||||||||||||||||    
T  6467264 tgatttttccggattatagaatccgaacaccctctaaacatcatttttcaagggaaaaac 6467205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 24690457 - 24690398
Alignment:
Q  147 tgatttttccggattacataatccgaacacccct-aaacaccctttttcaagggaaaaac 205  Q
    |||||||| | ||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  24690457 tgattttttcagattatacaatccgaacacccctcaaacaccctttttcaagggaaaaac 24690398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 24042315 - 24042254
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  24042315 tacatgatgtttccggattacataatccggaaaccccctaaacaccatttttcaaggtaaaa 24042254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 28230591 - 28230534
Alignment:
Q  147 tgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||| |||||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  28230591 tgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 28230534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 47202526 - 47202587
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||||||||| |||| ||||    
T  47202526 tacatgatgtttccggattacataatccggaaaccccctaaacacccttttttaaggtaaaa 47202587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 9151924 - 9151960
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  9151924 caaattctaaacatgtttgtaacatggatagtcattt 9151960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 28230499 - 28230463
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  28230499 caaattctaaacatgtttgtaacatggatagtcattt 28230463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 36468568 - 36468532
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  36468568 caaattctaaacatgtttgtaacatggatagtcattt 36468532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 42925672 - 42925636
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  42925672 caaattctaaacatgtttgtaacatggatagtcattt 42925636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 5278393 - 5278428
Alignment:
Q  208 aaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5278393 aaattttgaacatgtttgtaacatggatagtcattt 5278428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 7115524 - 7115477
Alignment:
Q  17 tgtgcaatttggattttaaaattcggattcagtttttcctttgttata 64  Q
    ||||| ||||||||||||||||  | ||||||||||||||||||||||    
T  7115524 tgtgcgatttggattttaaaatctgaattcagtttttcctttgttata 7115477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 19225725 - 19225670
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaag 197  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||| |||||||||    
T  19225725 tacatgatgtttccggattacataatccggaaatcccctaaacaccatttttcaag 19225670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 31643073 - 31643134
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||| ||||||||||||| |||| ||||    
T  31643073 tacatgatgtttccggattacataatccggaaaccccccaaacacccttttttaaggtaaaa 31643134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 37518422 - 37518361
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||  ||||||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  37518422 tacatgaagtttccggattacataatccggaaaccccctaaacaccatttttcaaggtaaaa 37518361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 42925768 - 42925707
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||| ||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  42925768 tacatgatgttttcggattacataatccggaaaccccctaaacaccttttttcaaggtaaaa 42925707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 3936236 - 3936272
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  3936236 caaattgtaaacatgtttgtaacatggataatcattt 3936272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 19225629 - 19225593
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  19225629 caaattctaaacatgtttgtaacatggatattcattt 19225593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 24042219 - 24042183
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||||||||||||||||| |||||||||||    
T  24042219 caaattctaaacatgtttgtaacattgatagtcattt 24042183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 30861142 - 30861198
Alignment:
Q  150 tttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    ||||| ||||||| | |||||||||||||| |||||||| ||||||| |||||||||    
T  30861142 ttttttcggattatagaatccgaacaccccataaacaccttttttcaggggaaaaac 30861198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 36408499 - 36408535
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  36408499 caaattctaaacatgtttgtaacatggatagtaattt 36408535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 42865133 - 42865097
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||| |||||||||||||||||||||||||    
T  42865133 caaattctaaatatgtttgtaacatggatagtcattt 42865097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 43185910 - 43185946
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  43185910 caaattttaaacatgtttataacatggataatcattt 43185946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 25539075 - 25538974
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaactcaaattttaaacatgtttgtaacatggatagtcat 241  Q
    |||||||| |||| ||||||||||||||| | ||||| |||||||  |||||||||| |  | | |||||| ||||||||||||||||||||||||||||    
T  25539075 tacatgatgtttctggattacataatccggaaaccccctaaacactatttttcaaggtatcagcacaaattctaaacatgtttgtaacatggatagtcat 25538976  T
Q  242 tt 243  Q
    ||    
T  25538975 tt 25538974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 3703377 - 3703314
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaaac 205  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  3703377 tacatgattttttcggattacataattcgaacaccccctaaacaccatttttcaagggaaaaac 3703314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 8106431 - 8106494
Alignment:
Q  142 ctacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaaa 204  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||    
T  8106431 ctacatgatttttccgtattacataatccgaacaccccctaaacaccatttttctagggaaaaa 8106494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 2506158 - 2506097
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  2506158 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 2506097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 19835560 - 19835621
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  19835560 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 19835621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 25752571 - 25752510
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  25752571 tacatgatgtttccagattacataatccgaaaaccccataaacaccctttttcaaggtaaaa 25752510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 46440401 - 46440340
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  46440401 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 46440340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 2506062 - 2506026
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  2506062 caaattttaaacatgtttgtaacatggatagtcattt 2506026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 8106529 - 8106565
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  8106529 caaattttaaacatgtttgtaacatggatagtcattt 8106565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 8106306 - 8106353
Alignment:
Q  17 tgtgcaatttggattttaaaattcggattcagtttttcctttgttata 64  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||||    
T  8106306 tgtgcaatcaggattttaaaatccggattcagtttttcctttgttata 8106353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 41323203 - 41323157
Alignment:
Q  159 attacataatccgaacacccctaaacaccctttttcaagggaaaaac 205  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||    
T  41323203 attatataatcggaacacccttaaacaccctttttcaagggaaaaac 41323157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 25491522 - 25491461
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  25491522 tacatgatgtttccggattacataatccggaaaccccctaaacaccttttttcaaggtaaaa 25491461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 40703704 - 40703765
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||| | ||| ||||| ||||||||||||||||||| ||||    
T  40703704 tacatgatgtttccggattacataacctgaaaaccccctaaacaccctttttcaaggtaaaa 40703765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 19835656 - 19835692
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19835656 caaattctaaacatgtttgtaacatggatagtcattt 19835692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 25752475 - 25752439
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25752475 caaattctaaacatgtttgtaacatggatagtcattt 25752439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 27181547 - 27181515
Alignment:
Q  211 ttttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||    
T  27181547 ttttaaacatgtttgtaacatggatagtcattt 27181515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 31582453 - 31582417
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31582453 caaattctaaacatgtttgtaacatggatagtcattt 31582417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 32441851 - 32441911
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||||| | ||||||||||||  ||||| |||| ||||    
T  32441851 tacatgatgtttccggattacataatccggaaacccctaaacacatttttttaaggtaaaa 32441911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 38416605 - 38416641
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc 179  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38416605 tacatgattttttcggattacataatccgaacacccc 38416641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 40703800 - 40703836
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40703800 caaattctaaacatgtttgtaacatggatagtcattt 40703836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 52089321 - 52089357
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||| |||||||||||||||||||||||||||||||    
T  52089321 caaatcttaaacatgtttgtaacatggatagtcattt 52089357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 53894056 - 53894020
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  53894056 caaattctaaacatgtttgtaacatggatagtcattt 53894020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 55052650 - 55052614
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  55052650 caaattctaaacatgtttgtaacatggatagtcattt 55052614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 23523946 - 23523997
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacacccttttt 193  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||    
T  23523946 tacatgatgtttccggattacataatccagaaaccccctaaacacccttttt 23523997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 25140951 - 25140917
Alignment:
Q  209 aattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||    
T  25140951 aattttgaacatgtttgtaacatggatagtcattt 25140917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 55052743 - 55052685
Alignment:
Q  146 atgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    ||||| ||||||||||| |||||||| | ||||| ||||||||||||||||||| ||||    
T  55052743 atgatgtttccggattatataatccggaaaccccctaaacaccctttttcaaggtaaaa 55052685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 14474242 - 14474205
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattta 244  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  14474242 caaattttgaacatgtttgtaacatggatagtcgttta 14474205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 17933264 - 17933203
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||| | | ||||| |||||||||||||| |||| ||||    
T  17933264 tacatgatgtttccggattacataatctggaaaccccttaaacacccttttttaaggtaaaa 17933203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 29822659 - 29822720
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||| |||||||||||||||| | ||||| |||||||||| |||||||| ||||    
T  29822659 tacatgatgttttcggattacataatccggaaaccccataaacaccctctttcaaggtaaaa 29822720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 31582549 - 31582488
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||| | |||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  31582549 tacatgatgttttctgattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 31582488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 38416963 - 38417000
Alignment:
Q  207 caaattttaaacatgtttgtaaca-tggatagtcattt 243  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38416963 caaattttaaacatgtttgtaacattggatagtcattt 38417000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 38536210 - 38536271
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||| ||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  38536210 tacatgatgtttccagattacataatccggaaaccccctaaacaccttttttcaaggtaaaa 38536271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 41413227 - 41413166
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||| |||||| |||| ||||    
T  41413227 tacatgatgtttccggattacataatccggaaaccccctaaacactcttttttaaggtaaaa 41413166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 7931793 - 7931829
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  7931793 caaattctaaacatgtttgtaacatggatagttattt 7931829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 17933168 - 17933132
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  17933168 caaattctaaacatgtttgtaacatggataatcattt 17933132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 25491426 - 25491390
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  25491426 caaattctaaacatgtttgtaacatgaatagtcattt 25491390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 38536306 - 38536342
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  38536306 caaattctaaacatgtttgtaacatgaatagtcattt 38536342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 41323123 - 41323087
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  41323123 caaattctaaacatgtttgtaacatggataatcattt 41323087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 48319095 - 48319059
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||||||||||||||||| |||||||||||    
T  48319095 caaattctaaacatgtttgtaacattgatagtcattt 48319059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 30721933 - 30721870
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca--cccctaaacaccctttttcaagggaaaaa 204  Q
    |||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  30721933 tacatgattttttcggattacataatccgaacactcccctaaacaccatttttcaagggaaaaa 30721870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 51258434 - 51258497
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaaac 205  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  51258434 tacataattttttcggattacataatccgaacaccccctaaacaccatttttcaagggaaaaac 51258497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 47740059 - 47739998
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  47740059 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 47739998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 5128019 - 5127964
Alignment:
Q  150 tttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaaac 205  Q
    ||||||||||||| |||||||||||||| ||||||||   ||||||||||||||||    
T  5128019 tttttccggattatataatccgaacacctctaaacacttattttcaagggaaaaac 5127964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 47302051 - 47302102
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacc-cctaaacacccttttt 193  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  47302051 tacatgatgtttccggattacataatccgaaaacctcctaaacacccttttt 47302102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 49096354 - 49096293
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaa 203  Q
    |||||||||||| || |||||||||||| |||| |||||||||| |||||||||||| ||||    
T  49096354 tacatgattttttcgaattacataatccaaacaccccctaaacagcctttttcaaggaaaaa 49096293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 50716284 - 50716345
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||| |||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  50716284 tacatgatgtttccagattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 50716345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 50796563 - 50796502
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||| |||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  50796563 tacatgatgtttccagattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 50796502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 3352097 - 3352061
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  3352097 caaattctaaacatgtttgtaacatggatagtcattt 3352061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 29048381 - 29048437
Alignment:
Q  150 tttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    ||||| ||||||| | |||||||||||||| |||||| |||||||||||||||||||    
T  29048381 ttttttcggattatagaatccgaacaccccctaaacatcctttttcaagggaaaaac 29048437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 35142202 - 35142238
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35142202 caaattctaaacatgtttgtaacatggatagtcattt 35142238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 38977779 - 38977743
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  38977779 caaattataaacatgtttgtaacatggatagtcattt 38977743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 49096258 - 49096222
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||||||||||||||||| |||||||||||    
T  49096258 caaattttaaacatgtttgtaacatagatagtcattt 49096222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 51258531 - 51258567
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||| ||||||||||||||||||    
T  51258531 caaattttaaacatgtttataacatggatagtcattt 51258567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 51816280 - 51816335
Alignment:
Q  147 tgatttttccggattacataatccgaacaccc-ctaaacaccctttttcaagggaa 201  Q
    |||||||| ||||||| | || |||||||||| |||||||||||||||||||||||    
T  51816280 tgattttttcggattatagaacccgaacaccctctaaacaccctttttcaagggaa 51816335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 33842103 - 33842069
Alignment:
Q  209 aattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||| ||||||||||||||    
T  33842103 aattttaaacatgtttgtaatatggatagtcattt 33842069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 3352193 - 3352132
Alignment:
Q  143 tacatgatttttccggattacataa-tccgaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||| || |||  |||||||||||||||| |||||| ||||    
T  3352193 tacatgatgtttccggattacataattcggaaaccccctaaacaccctttatcaaggtaaaa 3352132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 3902933 - 3902872
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| |||  ||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  3902933 tacatgatgtttttggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 3902872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 34821470 - 34821409
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||| ||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  34821470 tacatgatgttttcggattacataatccggaaaccccctaaacaccatttttcaaggtaaaa 34821409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 35142106 - 35142167
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||| ||||| |||| ||||    
T  35142106 tacatgatgtttccggattacataatccggaaaccccctaaacaccattttttaaggtaaaa 35142167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 43473096 - 43473035
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||| ||||| |||| ||||    
T  43473096 tacatgatgtttccggattacataatccggaaaccccctaaacaccattttttaaggtaaaa 43473035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 47739963 - 47739926
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattta 244  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  47739963 caaattctaaacatgtttgtaacatagatagtcattta 47739926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 51540741 - 51540680
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||| ||||||||||||| | ||||| |||||||| |||||||||| ||||    
T  51540741 tacatgatgtttccgaattacataatccggaaaccccttaaacaccgtttttcaaggtaaaa 51540680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 501172 - 501136
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  501172 caaattctaaacatgtttgtaaaatggatagtcattt 501136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 5127929 - 5127901
Alignment:
Q  208 aaattttaaacatgtttgtaacatggata 236  Q
    |||||||||||||||||||||||||||||    
T  5127929 aaattttaaacatgtttgtaacatggata 5127901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 28873133 - 28873169
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||||||||||||||||| |||||||||||    
T  28873133 caaattctaaacatgtttgtaacatagatagtcattt 28873169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 29035842 - 29035878
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| | ||||||||||||||||||||||||||||    
T  29035842 caaattctgaacatgtttgtaacatggatagtcattt 29035878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 33438649 - 33438685
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  33438649 caaattctaaacatgtttgtaatatggatagtcattt 33438685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 34821374 - 34821338
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||||||||||||||||| |||||||||||    
T  34821374 caaattctaaacatgtttgtaacatagatagtcattt 34821338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 39149850 - 39149902
Alignment:
Q  152 tttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    ||||||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  39149850 tttccggattacataatccggaaaccccctaaacaccatttttcaaggtaaaa 39149902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 39149937 - 39149973
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||||||||||||||||| | |||||||||    
T  39149937 caaattttaaacatgtttgtaacattggtagtcattt 39149973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 47123154 - 47123190
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  47123154 caaattctaaacatgtttgtaacatggataatcattt 47123190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 47769390 - 47769426
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| | ||||||||||||||||||||||||||||    
T  47769390 caaattctgaacatgtttgtaacatggatagtcattt 47769426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 50716380 - 50716416
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  50716380 caaattctaaacatgtttgtaacatgaatagtcattt 50716416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 50796467 - 50796431
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  50796467 caaattctaaacatgtttgtaacatgaatagtcattt 50796431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 51540645 - 51540609
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||||||||||||||| |||||||||||||    
T  51540645 caaattctaaacatgtttgtaacttggatagtcattt 51540609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 25217912 - 25217852
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  25217912 tacatgatgtttccggattacataatccggaaacccctaaacaccccttttcaaggtaaaa 25217852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 41203310 - 41203246
Alignment:
Q  142 ctacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaaac 205  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  41203310 ctacataatttttctggattacataatccgaacaccccgtaaacaccctttttaaagagaaaaac 41203246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 38066792 - 38066733
Alignment:
Q  146 atgatttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaaac 205  Q
    ||||||||| |||||||||||| || ||||||| ||||||||| ||||||||||||||||    
T  38066792 atgattttttcggattacataacccaaacacccataaacaccccttttcaagggaaaaac 38066733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 4268360 - 4268299
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  4268360 tacatgatgtttccggattacataatccggaaaccccataaacaccctttttcaaggtaaaa 4268299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 15995233 - 15995180
Alignment:
Q  145 catgatttttccggattacataatccgaaca-cccctaaacaccctttttcaag 197  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  15995233 catgatgtttccggattacataatccgaaaaccccctaaacaccctttttcaag 15995180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 45153913 - 45153852
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  45153913 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 45153852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 17474825 - 17474789
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  17474825 caaattttaaacatgtttgtaacatggatagtcattt 17474789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 41203212 - 41203176
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  41203212 caaattttaaacatgtttgtaacatggatagtcattt 41203176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 34517133 - 34517195
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccct-aaacaccctttttcaagggaaaaac 205  Q
    ||||||||||||| |||||||||||||| || |||||| ||||||| |||||||||||||||||    
T  34517133 tacatgatttttc-ggattacataatccaaataccccttaaacaccatttttcaagggaaaaac 34517195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 33452565 - 33452504
Alignment:
Q  143 tacatgatttttccggattacataatccgaacac-ccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||| |||||||||| | || |||||||||||||||||||||| ||||    
T  33452565 tacatgatgtttccggatcacataatccggaaactccctaaacaccctttttcaaggtaaaa 33452504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 41855021 - 41854960
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||| ||||| | ||||| ||||||||||||||||||| ||||    
T  41855021 tacatgatgtttccggattacatgatccggaaaccccctaaacaccctttttcaaggtaaaa 41854960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 42894409 - 42894470
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  42894409 tacatgatgtttccggattacataatccggaaaccccctaaacaccatttttcaaggtaaaa 42894470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 5507547 - 5507583
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  5507547 caaattctaaacatgtttgtaacatggatagtcattt 5507583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 32187895 - 32187859
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32187895 caaattttaaatatgtttgtaacatggatagtcattt 32187859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 39447290 - 39447326
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  39447290 caaattctaaacatgtttgtaacatggatagtcattt 39447326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 15995138 - 15995103
Alignment:
Q  208 aaattttaaacatgtttgtaacatggatagtcattt 243  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15995138 aaattctaaacatgtttgtaacatggatagtcattt 15995103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 30763679 - 30763737
Alignment:
Q  147 tgatttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaaac 205  Q
    ||||||||  |||||| ||||||||||||||| |||||||| ||||||||  |||||||    
T  30763679 tgatttttttggattatataatccgaacacccttaaacaccatttttcaaaagaaaaac 30763737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 17474921 - 17474860
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||  |||||||||| ||||    
T  17474921 tacatgatgtttccggattacataatccggaaaccccctaaacacaatttttcaaggtaaaa 17474860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 32187991 - 32187930
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||| ||||||| |||||||||| ||||    
T  32187991 tacatgatgtttccggattacataatccggaaacccccgaaacaccatttttcaaggtaaaa 32187930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 36875017 - 36875078
Alignment:
Q  143 tacatgatttttccggattacataatccgaacaccc-ctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||||| | |||| || |||||| |||||||||| ||||    
T  36875017 tacatgatgtttccggattacataatccggaaaccctctgaacaccatttttcaaggtaaaa 36875078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 38308912 - 38308879
Alignment:
Q  147 tgatttttccggattacataatccgaacacccct 180  Q
    |||||||||||||||| |||||||||||||||||    
T  38308912 tgatttttccggattatataatccgaacacccct 38308879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 39447194 - 39447255
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| ||| |||||||||||||| | | ||||| ||||||||||||||||||| ||||    
T  39447194 tacatgatgttttcggattacataatctggaaaccccataaacaccctttttcaaggtaaaa 39447255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 45153810 - 45153781
Alignment:
Q  214 taaacatgtttgtaacatggatagtcattt 243  Q
    ||||||||||||||||||||||||||||||    
T  45153810 taaacatgtttgtaacatggatagtcattt 45153781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 19110103 - 19110075
Alignment:
Q  176 cccctaaacaccctttttcaagggaaaaa 204  Q
    |||||||||||||||||||||||||||||    
T  19110103 cccctaaacaccctttttcaagggaaaaa 19110075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 25217801 - 25217765
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||||||||||||| |||||||||||||||    
T  25217801 caaattctaaacatgtttgtagcatggatagtcattt 25217765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 33366959 - 33366995
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc 179  Q
    |||||||| |||||||||||||||||||||| |||||    
T  33366959 tacatgatatttccggattacataatccgaaaacccc 33366995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 33452469 - 33452433
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  33452469 caaattctaaacatgtttgtaacatggataatcattt 33452433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38309032 - 38308980
Alignment:
Q  17 tgtgcaatttggattttaaaattcggattcagtttttcctttgttatatggtg 69  Q
    ||||||||| |||||||  ||| || |||||||||||||||||||||| ||||    
T  38309032 tgtgcaattcggattttgtaatccgaattcagtttttcctttgttatagggtg 38308980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 44465753 - 44465717
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||||||||||||||||||| |||||||||    
T  44465753 caaattctaaacatgtttgtaacatggttagtcattt 44465717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 3522 - 3461
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  3522 tacatgatgtttccggattacataatccggaaaccccataaacaccctttttcaaggtaaaa 3461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 142090 - 142029
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  142090 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 142029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 141994 - 141958
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  141994 caaattctaaacatgtttgtaacatggatagtcattt 141958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 44106255 - 44106316
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  44106255 tacatgatgtttccggattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 44106316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 1076595 - 1076650
Alignment:
Q  150 tttttccggattacataatccgaacacccctaaacaccctttttcaagggaaaaac 205  Q
    ||||||| ||||| |||||||||||||||||||||||   ||||||||||||||||    
T  1076595 tttttccagattatataatccgaacacccctaaacacttattttcaagggaaaaac 1076650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 36980623 - 36980673
Alignment:
Q  147 tgatttttccggattacataatccgaacacccctaaacaccctttttcaag 197  Q
    |||||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  36980623 tgattttttcggattatagcatccgaacacccctaaacaccctttttcaag 36980673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 3094713 - 3094774
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  3094713 tacatgatgtttccggattacataatccggaaaccccctaaacaccatttttcaaggtaaaa 3094774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 8885580 - 8885519
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||| ||||||||| ||||    
T  8885580 tacatgatgtttccggattacataatccggaaaccccctaaacacccattttcaaggtaaaa 8885519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 31520019 - 31519958
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||||||||| |||| ||||    
T  31520019 tacatgatgtttccggattacataatccggaaaccccctaaacacccttttttaaggtaaaa 31519958  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 35676662 - 35676629
Alignment:
Q  146 atgatttttccggattacataatccgaacacccc 179  Q
    ||||||||||||||||||||||||||||||||||    
T  35676662 atgatttttccggattacataatccgaacacccc 35676629  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 40994824 - 40994885
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| |||||||||||||||||| ||| | |||||||||||||||| |||||| ||||    
T  40994824 tacatgatgtttccggattacataatctgaaaaccccctaaacaccctttatcaaggtaaaa 40994885  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 8885484 - 8885448
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  8885484 caaattctaaacatgtttgtaacatggatagtcattt 8885448  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 9073632 - 9073668
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  9073632 caaattctaaacatgtttgtaacatggatagtcattt 9073668  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 14164088 - 14164052
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  14164088 caaattctaaacatgtttgtaacatggatagtcattt 14164052  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 17120134 - 17120082
Alignment:
Q  17 tgtgcaatttggattttaaaattcggattcagtttttcctttgttatatggtg 69  Q
    |||||||| ||||||||| ||| || |||||||||||||||||||||| ||||    
T  17120134 tgtgcaatgtggattttataatccgaattcagtttttcctttgttatagggtg 17120082  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 27927972 - 27927936
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  27927972 caaattctaaacatgtttgtaacatggatagtcattt 27927936  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 40392664 - 40392700
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40392664 caaattctaaacatgtttgtaacatggatagtcattt 40392700  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 40994920 - 40994956
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40994920 caaattctaaacatgtttgtaacatggatagtcattt 40994956  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 42280922 - 42280886
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||| ||||||||||    
T  42280922 caaattttaaacatgtttgtaacatgcatagtcattt 42280886  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 42281016 - 42280957
Alignment:
Q  145 catgatttttccggattacataatccgaacacccc-taaacaccctttttcaagggaaaa 203  Q
    |||||| ||||| |||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  42281016 catgatgtttccagattacataatccggaaaccccctaaacaccctttttcaaggtaaaa 42280957  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 44106351 - 44106386
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcatt 242  Q
    |||||| |||||||||||||||||||||||||||||    
T  44106351 caaattctaaacatgtttgtaacatggatagtcatt 44106386  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 9073536 - 9073590
Alignment:
Q  143 tacatgatttttccggattacataatcc-gaacacccctaaacaccctttttcaa 196  Q
    |||||||| ||||||||||||||||||| |||  |||||||||||| ||||||||    
T  9073536 tacatgatgtttccggattacataatccagaaaccccctaaacaccttttttcaa 9073590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 16310634 - 16310692
Alignment:
Q  146 atgatttttccggattacataatccgaacac-ccctaaacaccctttttcaagggaaaa 203  Q
    ||||||||||||||||||| |||||  | || |||||||||||||||||||||| ||||    
T  16310634 atgatttttccggattacacaatccagaaactccctaaacaccctttttcaaggtaaaa 16310692  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 36404281 - 36404232
Alignment:
Q  143 tacatgatttttccggattacataatccgaacacccctaaacacccttttt 193  Q
    ||||||||||||| |||||| |||||||||| || ||||||||||||||||    
T  36404281 tacatgatttttc-ggattatataatccgaaaactcctaaacacccttttt 36404232  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 37248593 - 37248651
Alignment:
Q  146 atgatttttccggattacataatcc-gaacacccctaaacaccctttttcaagggaaaa 203  Q
    ||||| ||||||||||||||||||| |||  |||||||||||| |||||||||| ||||    
T  37248593 atgatgtttccggattacataatccagaaaccccctaaacaccatttttcaaggtaaaa 37248651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 41530805 - 41530839
Alignment:
Q  209 aattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||||||    
T  41530805 aattttgaacatgtttgtaacatggatagtcattt 41530839  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 27928068 - 27928007
Alignment:
Q  143 tacatgatttttccggattacataatc-cgaacacccctaaacaccctttttcaagggaaaa 203  Q
    |||||||| ||||||||||||||||||  |||  |||||||||||| |||||||||| ||||    
T  27928068 tacatgatgtttccggattacataatcaggaaaccccctaaacaccatttttcaaggtaaaa 27928007  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 3094813 - 3094849
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  3094813 caaattctaaacatgtttgtaacatggataatcattt 3094849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 16310727 - 16310763
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  16310727 caaattctaaacatgtttgtaacatgaatagtcattt 16310763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 21004430 - 21004482
Alignment:
Q  152 tttccggattacataatccgaacac-ccctaaacaccctttttcaagggaaaa 203  Q
    |||||||||||||||||||||| || ||||||||||| ||||| |||| ||||    
T  21004430 tttccggattacataatccgaaaactccctaaacaccattttttaaggtaaaa 21004482  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 28916903 - 28916939
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  28916903 caaattctaaacatgtttgttacatggatagtcattt 28916939  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 34853456 - 34853492
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| |||| |||||||||||||||||||||||||    
T  34853456 caaattctaaaaatgtttgtaacatggatagtcattt 34853492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 36165869 - 36165833
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  36165869 caaattgtaaacatgtttgtaacatggatagttattt 36165833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 37248686 - 37248722
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  37248686 caaattctaaacatgtttgttacatggatagtcattt 37248722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 9624 - 9570
Alignment:
Q  143 tacatgatttttccggattacataatccgaaca-cccctaaacaccctttttcaa 196  Q
    |||||||| |||||||||||||||||||||| | ||||| |||||||||||||||    
T  9624 tacatgatgtttccggattacataatccgaaaaccccctgaacaccctttttcaa 9570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 59488 - 59524
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||| ||||||||||||||||    
T  59488 caaattttaaacatgtttgtgacatggatagtcattt 59524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 60001 - 59965
Alignment:
Q  207 caaattttaaacatgtttgtaacatggatagtcattt 243  Q
    |||||||| |||||||||||||||| |||||||||||    
T  60001 caaattttgaacatgtttgtaacatagatagtcattt 59965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 23238 - 23266
Alignment:
Q  215 aaacatgtttgtaacatggatagtcattt 243  Q
    |||||||||||||||||||||||||||||    
T  23238 aaacatgtttgtaacatggatagtcattt 23266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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