View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6136_high_2 (Length: 691)

Name: NF6136_high_2
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6136_high_2
NF6136_high_2
[»] chr1 (5 HSPs)
chr1 (143-676)||(11470782-11471311)
chr1 (34-96)||(11319109-11319171)
chr1 (34-96)||(11477130-11477192)
chr1 (94-151)||(11318843-11318900)
chr1 (94-151)||(11476864-11476921)


Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 143 - 676
Target Start/End: Complemental strand, 11471311 - 11470782
Alignment:
Q  143 cacaaataaagccccccaaaatgacataagt-agtatttgaagccgatgaagattatttagatgacaatgattaatgacaatcaagttgaaaacttaaga 241  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11471311 cacaaataaagccccccaaaatgacataagttagtatttgaagccgatgaagattatttagatgacaatgattaatgacaatcaagttgaaaatttaaga 11471212  T
Q  242 tttcaaagttaaacatgaaaatgaaaagttgcatgattcaattgttacaaactggcaaatgtaatgtatggttcaaaactaagtttcatcaaaacgttta 341  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  11471211 tttcaaagttaaacatgaaaatgagaagttgcatgatacaattgttacaaactagcaaatgcaatgtatggttcaaaactaagtttcatcaaaacgttta 11471112  T
Q  342 gagttatacaaatatattgagaaaggataacgatgaaacaacnnnnnnnntgtaaaggaagattcttgttgataaatttcgacaagattacataatatta 441  Q
    |||||||||||||||||| ||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||||||| ||     
T  11471111 gagttatacaaatatattcagaaaggataacgatgaaacagcaaaaaaaatgtaaaggaagattcttgttgataaatttcgacaagattacataatgtt- 11471013  T
Q  442 atgttggaatattacaaagataggtaaggttacattcaaatgaattgttttgtcgaaagataaaagtacatgatatctccctccaagaggccaagccatg 541  Q
        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11471012 ----tggaatattacaaagatagataaggttacattcaaatgaattgttttgtcgaaagacaaaagtacatgatatctccctccaagaggccaagccatg 11470917  T
Q  542 gggaaaagttggatatgaagcacgaaattacaggaaacaaaaagagcacaaagtgtattccttcaacggttatcagtttggccgaaatgctattgcctgt 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11470916 gggaaaagttggatatgaagcacgaaattacaggaaacaaaaagagcacaaagtgtattccttcaacggttatcagtttggccgaaatgctattgcctgt 11470817  T
Q  642 aagagattcttcggttaactaactgtgatgtaact 676  Q
    |||||||||||||||||||||||||||||||||||    
T  11470816 aagagattcttcggttaactaactgtgatgtaact 11470782  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 11319171 - 11319109
Alignment:
Q  34 atgccattagctaggtggccagtggagctcaaagacgaagtttgaattaaaaaagtcatattt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11319171 atgccattagctaggtggccagtggagctcaaagacgaagtttgaattaaagaagtcatattt 11319109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 11477192 - 11477130
Alignment:
Q  34 atgccattagctaggtggccagtggagctcaaagacgaagtttgaattaaaaaagtcatattt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11477192 atgccattagctaggtggccagtggagctcaaagacgaagtttgaattaaagaagtcatattt 11477130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 11318900 - 11318843
Alignment:
Q  94 tttagactctgaaccctttttagagaacaaacaatcgaaggaaaatggtcacaaataa 151  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11318900 tttagactctgaaccctttttagagaacaaacaatcaaaggaaaatggtcacaaataa 11318843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 11476921 - 11476864
Alignment:
Q  94 tttagactctgaaccctttttagagaacaaacaatcgaaggaaaatggtcacaaataa 151  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11476921 tttagactctgaaccctttttagagaacaaacaatcaaaggaaaatggtcacaaataa 11476864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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