View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_21 (Length: 249)
Name: NF6136_high_21
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 31277659 - 31277455
Alignment:
| Q |
8 |
gagtgagatgaaaggagtaaaactaaccaagaggccaaccgagagaagcaagagcaaaaggcaaaggagcataagctgcaggggtagcaattgtagtagc |
107 |
Q |
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| T |
31277659 |
gagtgaaatgaaaggagtaaaactaaccaagaggccaaccgagagaagcaagagcaaaaggcaaaggagcataagctgcaggggtagcaattgtagtagc |
31277560 |
T |
|
| Q |
108 |
aacatggaaagcagcgtgcttccatgttcctttaccactcactcctccttcttctgcatcttgttcttctatcccttcctcaactgttgacctttgctct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||| |
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| T |
31277559 |
aacatggaaagcagcgtgcttccatgttcctttaccactcactcctcct---------tctttttcttctatccctacctcaactgttgacctttgttct |
31277469 |
T |
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| Q |
208 |
ggtaaactcatttt |
221 |
Q |
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|||||||||||||| |
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| T |
31277468 |
ggtaaactcatttt |
31277455 |
T |
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