View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_22 (Length: 247)
Name: NF6136_high_22
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 366090 - 366216
Alignment:
| Q |
1 |
atgaaggtgttgtatgtaatgagagacatgtatgtaatataatgaggttgaggggaagaattggtttgtaagaatgagaagaatttgaagtcttactgag |
100 |
Q |
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| T |
366090 |
atgaaggtgttgtatgtaatgagagacatgcatgtaatgtaatgaggttgaggggaagaattggtttgtaagaatgagaagaatttgaagtcttactgag |
366189 |
T |
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| Q |
101 |
gagtggtgttgatgatgttgcttcttc |
127 |
Q |
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| T |
366190 |
gagtggtgttgatgatgttgcttcttc |
366216 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 366284 - 366323
Alignment:
| Q |
195 |
cggtatgattcttagatctatttagaattcatttgtgttc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
366284 |
cggtatgattcttagatctatttagaattcatttgtgttc |
366323 |
T |
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