View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6136_high_23 (Length: 245)

Name: NF6136_high_23
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6136_high_23
NF6136_high_23
[»] chr2 (8 HSPs)
chr2 (1-136)||(44148255-44148390)
chr2 (134-181)||(44148471-44148518)
chr2 (162-226)||(37649595-37649659)
chr2 (184-228)||(44439172-44439216)
chr2 (157-228)||(9943318-9943389)
chr2 (186-228)||(33502968-33503010)
chr2 (166-226)||(1976986-1977046)
chr2 (157-225)||(36374211-36374279)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-62)||(8211-8272)
[»] chr5 (1 HSPs)
chr5 (155-228)||(370829-370902)
[»] chr4 (1 HSPs)
chr4 (157-226)||(39438683-39438752)
[»] chr3 (2 HSPs)
chr3 (157-228)||(52925730-52925801)
chr3 (157-226)||(3845233-3845302)
[»] chr6 (3 HSPs)
chr6 (157-224)||(29240575-29240642)
chr6 (158-228)||(34620782-34620852)
chr6 (158-228)||(34748219-34748289)
[»] chr1 (4 HSPs)
chr1 (157-228)||(31117370-31117441)
chr1 (157-196)||(52263709-52263748)
chr1 (160-228)||(8381882-8381950)
chr1 (184-228)||(9939847-9939891)
[»] chr8 (3 HSPs)
chr8 (157-227)||(41614739-41614809)
chr8 (157-226)||(36448009-36448078)
chr8 (155-228)||(39648264-39648337)
[»] chr7 (1 HSPs)
chr7 (160-196)||(41009767-41009802)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 44148255 - 44148390
Alignment:
Q  1 tccatcatcttcacaacttcttcaacctgtcataacaccaatttcataagaacttgttcaacgctgcgaatcataagaaacagatttagaacttatcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44148255 tccatcatcttcacaacttcttcaacctgtcataacaccaatttcataagaacttgttcaacgctgcgaatcataagaaacagatttagaactaatcagc 44148354  T
Q  101 aataaataaataaccttgtttctatgagaagatgga 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  44148355 aataaataaataaccttgtttctatgagaagatgga 44148390  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 44148471 - 44148518
Alignment:
Q  134 ggaatcaagaatatgaataaatatatgtttggttccatttttgaagta 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  44148471 ggaatcaagaatatgaataaatatatgtttggtttcatttttgaagta 44148518  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 37649659 - 37649595
Alignment:
Q  162 ttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttg 226  Q
    ||||||||| ||||| || ||||||||||||||||  |||| || |||| |||||||||||||||    
T  37649659 ttggttccacttttggaggagtcaaaattgattcttgaggtatggaattgattttgacatgtttg 37649595  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 44439172 - 44439216
Alignment:
Q  184 caaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||    
T  44439172 caaaattgattctaaaggtgttgaattaattttgacatgtttggt 44439216  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 9943318 - 9943389
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    ||||||||||||||  |||| || |  ||||||||||||| ||||||| ||||| ||||| |||||||||||    
T  9943318 tatgtttggttccacatttggagcaaccaaaattgattctgaaggtgtaaaattgattttaacatgtttggt 9943389  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 33503010 - 33502968
Alignment:
Q  186 aaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||    
T  33503010 aaattgattctgaaggtgtaaaattgattttgacatgtttggt 33502968  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 1977046 - 1976986
Alignment:
Q  166 ttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttg 226  Q
    ||||| ||||| || || |||||||||||||  |||| ||||||| |||||||||||||||    
T  1977046 ttccacttttggaggagccaaaattgattctagaggtttgaaattgattttgacatgtttg 1976986  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 36374211 - 36374279
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgttt 225  Q
    ||||||||| | || ||||||||  ||||||||||||| | |||||||  |||| ||||||||||||||    
T  36374211 tatgtttgggttcacttttgaagcggtcaaaattgattttaaaggtgtataattgattttgacatgttt 36374279  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8211 - 8272
Alignment:
Q  1 tccatcatcttcacaacttcttcaacctgtcataacaccaatttcataagaacttgttcaac 62  Q
    |||||||||||||||||||||||  |||||   |||| ||||||||||||||||||||||||    
T  8211 tccatcatcttcacaacttcttctgcctgtttaaacaacaatttcataagaacttgttcaac 8272  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 370902 - 370829
Alignment:
Q  155 tatatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    ||||||||||||||||||||| ||| ||||||||| ||||||| || ||| ||||| ||| ||| |||||||||    
T  370902 tatatgtttggttccatttttaaaggagtcaaaatagattctcgagatgtaaaattgattatgatatgtttggt 370829  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 39438683 - 39438752
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttg 226  Q
    ||||||||||||||  |||| ||||||||||||||||| |  |||||| ||||| |||||||||||||||    
T  39438683 tatgtttggttccacgtttggagtagtcaaaattgattttggaggtgtaaaattgattttgacatgtttg 39438752  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 52925801 - 52925730
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    |||||| ||||||| ||||| || ||||||||||||||||  ||||||  |||| |||||||||||||||||    
T  52925801 tatgttcggttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttggt 52925730  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 3845302 - 3845233
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttg 226  Q
    |||||||||||||| ||||| ||||  |||||||||||||  ||||||  |||| |||||||||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttg 3845233  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 29240642 - 29240575
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtt 224  Q
    |||||||||||||| |||||  | | ||||||||||||||  |||||| ||||| |||||||||||||    
T  29240642 tatgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgtt 29240575  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 34620782 - 34620852
Alignment:
Q  158 atgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    |||||| |||||| ||||| || |  ||||||||||||| |||||||  |||| |||||||||||||||||    
T  34620782 atgtttcgttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttggt 34620852  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 34748219 - 34748289
Alignment:
Q  158 atgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    |||||| |||||| ||||| || |  ||||||||||||| |||||||  |||| |||||||||||||||||    
T  34748219 atgtttcgttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttggt 34748289  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 31117370 - 31117441
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    ||||||||||||||| |||||||||  ||||||||| |||  |||||| ||||| ||||||| | |||||||    
T  31117370 tatgtttggttccatgtttgaagtacccaaaattgactctagaggtgtaaaattgattttgataggtttggt 31117441  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 52263748 - 52263709
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattct 196  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  52263748 tatgtttggttccacttttgaagtagtcataattgattct 52263709  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 8381882 - 8381950
Alignment:
Q  160 gtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    ||||||||| | || || || ||||||||||||||||  |||| | ||||| |||||||||||||||||    
T  8381882 gtttggttcgacttctggaggagtcaaaattgattctagaggtataaaattgattttgacatgtttggt 8381950  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 9939891 - 9939847
Alignment:
Q  184 caaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    ||||| |||||||  |||||| |||||||||||||||||||||||    
T  9939891 caaaactgattctagaggtgtaaaattaattttgacatgtttggt 9939847  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 41614739 - 41614809
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttgg 227  Q
    ||||||||||||||||| || || || |||||||||||||  |||| | ||||| |||||||| |||||||    
T  41614739 tatgtttggttccatttgtgtaggagccaaaattgattctagaggtataaaattgattttgacttgtttgg 41614809  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 36448009 - 36448078
Alignment:
Q  157 tatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttg 226  Q
    |||||||||||||| ||||  || |||| ||||||||||| || ||||  |||| |||||||||||||||    
T  36448009 tatgtttggttccactttttgagaagtctaaattgattctaaatgtgtagaattcattttgacatgtttg 36448078  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 39648337 - 39648264
Alignment:
Q  155 tatatgtttggttccatttttgaagtagtcaaaattgattctcaaggtgtgaaattaattttgacatgtttggt 228  Q
    ||||||||||||| || ||||  || ||||||||||||||||  || |||  |||| |||||||||||||||||    
T  39648337 tatatgtttggttacacttttagaggagtcaaaattgattctagagatgtataattgattttgacatgtttggt 39648264  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 41009767 - 41009802
Alignment:
Q  160 gtttggttccatttttgaagtagtcaaaattgattct 196  Q
    |||||||||||||||||||| ||||||||||||||||    
T  41009767 gtttggttccatttttgaag-agtcaaaattgattct 41009802  T

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