View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_24 (Length: 244)
Name: NF6136_high_24
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42577637 - 42577398
Alignment:
| Q |
1 |
taaaaagtattaaccgaaatcagagacaaaaatcgatagaccttaacatcaatcagaccatctacgaacatgccaatgttatcgttggtgaaagcactct |
100 |
Q |
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| T |
42577637 |
taaaaagtattaaccgaaatcagagacaaaaatcgatagaccttaacatcaatccgaccatctacgaacatgccaatgttatcgttggtgaaagcactct |
42577538 |
T |
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| Q |
101 |
ggctattaagtttaagagtttctatccatagcttatggacacaagcaattttatcaacaaaagggatcaaaaaatggacgcctgtaggaagagttttaaa |
200 |
Q |
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| T |
42577537 |
ggctattaagtttaagagtttctatccatagcttatggacgcaagcaattttatcaacaaaagggatcaaaaaatggacgccggtaggaagagttttaaa |
42577438 |
T |
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| Q |
201 |
gtactttccgtatcgctcaatgatatacactctcttctcc |
240 |
Q |
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| T |
42577437 |
gtactttccatatcgctcaatgatatacactgtctgctcc |
42577398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42570451 - 42570222
Alignment:
| Q |
1 |
taaaaagtattaaccgaaatcagagacaaaaa--tcgatagaccttaacatcaatcagaccatctacgaacatgccaatgttatcgttggtgaaagcact |
98 |
Q |
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| T |
42570451 |
taaaaagtattaactggaattagagataaaaaattcgatacaccttaacatcaatgcaaccacccacgaacatgctgatgttatccttggtgaaagcagg |
42570352 |
T |
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| Q |
99 |
ctggctattaagttta-agagtttctatccatagcttatggacacaagcaattttatcaacaaaagggatcaaaaaatggacgcctgtaggaagagtttt |
197 |
Q |
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| T |
42570351 |
caggcgatcaagaatagagggtttttttctatagatcatggacgcgagcaattttatcaacaaaagggttcaaaaaatggatgccggtaggaagagattt |
42570252 |
T |
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| Q |
198 |
aaagtactttccgtatcgctcaatgatata |
227 |
Q |
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|||||| ||||| |||| ||| |||||||| |
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| T |
42570251 |
aaagtattttccatatctctcgatgatata |
42570222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 42594206 - 42594104
Alignment:
| Q |
118 |
gtttctatccatagcttatggacacaagcaattttatcaacaaaagggatcaaaaaatggacgcctgtaggaagagttttaaagtactttccgtatcgct |
217 |
Q |
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||||||||||||| ||||||||| | | ||| || ||| |||||||| |||||||||||||||||||||| ||||| || ||||| |||||| ||| || |
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| T |
42594206 |
gtttctatccatatcttatggacgcgaacaacttcatcgacaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaagtattttccgaatctct |
42594107 |
T |
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| Q |
218 |
caa |
220 |
Q |
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||| |
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| T |
42594106 |
caa |
42594104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 42572618 - 42572578
Alignment:
| Q |
187 |
ggaagagttttaaagtactttccgtatcgctcaatgatata |
227 |
Q |
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| T |
42572618 |
ggaagagttttaaagtattttccatatcgctcaatgatata |
42572578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 42607422 - 42607344
Alignment:
| Q |
143 |
aagcaattttatcaacaaaagggatcaaaaaatggacgcctgtaggaagagttttaaagtactttccgtatcgctcaat |
221 |
Q |
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|||||||| ||||||||| ||||| ||||||||||| || | ||||||||| |||| ||| ||||| |||||||||| |
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| T |
42607422 |
aagcaattctatcaacaagagggaccaaaaaatggattccagaaggaagagtcttaacgtattttccaaatcgctcaat |
42607344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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