View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_26 (Length: 242)
Name: NF6136_high_26
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32896258 - 32896035
Alignment:
| Q |
1 |
tctctgctaccttaccagctaaagatacttgctatattctgcattcttctacgtctccgtctccgctattgtactgccttttaactttggtcttgatatc |
100 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32896258 |
tctctgctaccttaccagctaaggatgcttgctatattctgcattcttctacgtctccgtctccactattgtactgccttttaactttggtcttgatatc |
32896159 |
T |
|
| Q |
101 |
aacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagatttgatgagaagcaagttac |
200 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896158 |
aacatctttgtcaccttctttaccccacagcaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagatttgatgagaagcaagttac |
32896059 |
T |
|
| Q |
201 |
ttttcgaagaaaaacgtgaccact |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
32896058 |
ttttcgaagaaaaacgtgaccact |
32896035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 32919604 - 32919503
Alignment:
| Q |
87 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagatttgat |
186 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| || |
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| T |
32919604 |
ttggtcttgaaatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccacgatgacaataaaaccacctatgatgctgaaaatttaat |
32919505 |
T |
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| Q |
187 |
ga |
188 |
Q |
| |
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|| |
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| T |
32919504 |
ga |
32919503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 32885509 - 32885359
Alignment:
| Q |
30 |
tgctatattctgcattcttctacgtctccgtctccgctattgtactgccttttaactttggtcttgatatcaacctctttgtcaccttctttaccccaca |
129 |
Q |
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|||||||||| |||||||||| | |||| ||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
32885509 |
tgctatattcaacattcttctaagcctccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccaca |
32885410 |
T |
|
| Q |
130 |
gtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaaga |
180 |
Q |
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| |||| ||| | ||||||||| |||||||| ||||||||||||| |||| |
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| T |
32885409 |
gcaacagatacaaacccatgatcacaataaatgcacctatgatgctaaaga |
32885359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 19503529 - 19503637
Alignment:
| Q |
80 |
tttaactttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaag |
179 |
Q |
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|||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||| || |||||||| |
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| T |
19503529 |
tttacctttggtcttgaaatcaacctctctgtcaccttctttcccccacagtaacaagtatagtcccatgatgacaataagtgcaccgatcatgctgaaa |
19503628 |
T |
|
| Q |
180 |
atttgatga |
188 |
Q |
| |
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|||| |||| |
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| T |
19503629 |
attttatga |
19503637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 32935838 - 32935747
Alignment:
| Q |
87 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaa |
178 |
Q |
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|||||||| | ||||| |||||||||||||||||| |||||||| |||||||| | |||||||||||||||||| ||||||||| |||||| |
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| T |
32935838 |
ttggtcttcaaatcaatctctttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacaataaatgcacctatgaggctgaa |
32935747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 32953234 - 32953136
Alignment:
| Q |
85 |
ctttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagattt |
183 |
Q |
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|||||||||||| ||| ||| |||||||||||||||| |||||||| |||||||| | |||||||||||| ||||| ||||||| |||||||| |||| |
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| T |
32953234 |
ctttggtcttgaaatcgaccactttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacgataaatgcacctataatgctgaaaattt |
32953136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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