View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_28 (Length: 238)
Name: NF6136_high_28
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 49865169 - 49864951
Alignment:
| Q |
1 |
cacacaatccaaaagacaattctaccgtgactgcactattagcggaacaatcgactttatctttggtgacgccgttggagttttccaaaactgcaaactc |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||| ||| |
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| T |
49865169 |
cacacaatccaaaagacaattctaccgcgactgcactattagcggaacaattgactttgtctttggtgatgctgttggagttttccaaaactgcaagctc |
49865070 |
T |
|
| Q |
101 |
gtcgtcagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaaccaatgttgacagtgtatccgcccttgttttccaaaactgccatt |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
49865069 |
gtcgttagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgtcatt |
49864970 |
T |
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| Q |
201 |
tcaccggggaacccgaagt |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
49864969 |
tcaccggggaacccgaagt |
49864951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 49871106 - 49870888
Alignment:
| Q |
1 |
cacacaatccaaaagacaattctaccgtgactgcactattagcggaacaatcgactttatctttggtgacgccgttggagttttccaaaactgcaaactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
49871106 |
cacacaatccaaaagacaattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaactc |
49871007 |
T |
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| Q |
101 |
gtcgtcagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaaccaatgttgacagtgtatccgcccttgttttccaaaactgccatt |
200 |
Q |
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| T |
49871006 |
atcgttagaaaaccaatggcaactcaacaatgcatggtgacagcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgccatt |
49870907 |
T |
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| Q |
201 |
tcaccggggaacccgaagt |
219 |
Q |
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||||||||||||||||||| |
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| T |
49870906 |
tcaccggggaacccgaagt |
49870888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 91789 - 91717
Alignment:
| Q |
83 |
ttccaaaactgcaaactcgtcgtcagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaa |
155 |
Q |
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||||||||||||||| |||| ||| |||| || ||| |||| ||||||||||| ||||| ||| |||||||| |
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| T |
91789 |
ttccaaaactgcaaattcgtggtccgaaagcctatgtcaaaccaacaatgcattgtgaccgcacaaggaagaa |
91717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 13960425 - 13960523
Alignment:
| Q |
17 |
caattctaccgtgactgcactattagcggaacaatcgactttatctttggtgacgccgttggagttttccaaaactgcaaactcgtcgtcagaaaacca |
115 |
Q |
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| T |
13960425 |
caattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaaaacca |
13960523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 13967589 - 13967671
Alignment:
| Q |
17 |
caattctaccgtgactgcactattagcggaacaatcgactttatctttggtgacgccgttggagttttccaaaactgcaaact |
99 |
Q |
| |
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|||||||||||||||||| | || || |||||||||||| | ||||| |||||| |||||||||||||||| |||||||| |
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| T |
13967589 |
caattctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaattgcaaact |
13967671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 37154697 - 37154625
Alignment:
| Q |
83 |
ttccaaaactgcaaactcgtcgtcagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaa |
155 |
Q |
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||||||||||||||| |||| ||| |||| || ||| |||| ||||||||||| ||||| ||| |||||||| |
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| T |
37154697 |
ttccaaaactgcaaattcgtggtccgaaagcctatgtcaaaccaacaatgcattgtgaccgcacaaggaagaa |
37154625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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