View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6136_high_3 (Length: 518)

Name: NF6136_high_3
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6136_high_3
NF6136_high_3
[»] chr2 (2 HSPs)
chr2 (17-504)||(45345236-45345720)
chr2 (29-85)||(45341300-45341356)
[»] chr5 (2 HSPs)
chr5 (17-236)||(33361560-33361771)
chr5 (17-236)||(33543249-33543465)
[»] chr8 (3 HSPs)
chr8 (17-84)||(28302703-28302770)
chr8 (277-326)||(30827744-30827793)
chr8 (289-326)||(40609865-40609902)
[»] chr7 (1 HSPs)
chr7 (270-344)||(34190042-34190116)
[»] chr3 (3 HSPs)
chr3 (256-359)||(1374119-1374222)
chr3 (277-353)||(9579487-9579563)
chr3 (283-326)||(20545415-20545458)
[»] chr1 (2 HSPs)
chr1 (280-359)||(34591153-34591232)
chr1 (268-360)||(47144702-47144794)
[»] chr4 (1 HSPs)
chr4 (295-371)||(34600144-34600220)


Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Complemental strand, 45345720 - 45345236
Alignment:
Q  17 gaacctagaaactaggaacttattaactgaacccaaataaatagtaacattaaaataaatcccaacaattcctcccctaaactgattcactgattcacgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |    
T  45345720 gaacctagaaactaggaacttattaactgaacccaaataaatagtaacattaaaataaatcctaacaattcctcccctaaattgattcactgattcacat 45345621  T
Q  117 atgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttctggaacacatcaagtttcaacggtttggtcataatatcagctact 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45345620 atgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaacggtttggtcataatatcagctact 45345521  T
Q  217 tgatttcttgtgttacaatggaccagcttcaccacttcttctttagtgagatctctcaagaaatggaaccttacatctatatgtttacttctaccatgca 316  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45345520 tgatttcttgtgttacaatggaccagtttcaccacttcttctttagtgagatctctcaagaaatggaaccttacatctatatgtttacttctaccatgca 45345421  T
Q  317 tgactggatttttggataatttaattgttgaactgttgtcacacataataacagtacacttgttttgtgagagcccaatcttctccaacacccttctcat 416  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  45345420 tgactggattttaggataatttaattgttgaactgttgtcacacatagtaacagtacacttgttttgtgagagcccaa---tctccaacacccttctcat 45345324  T
Q  417 ccacacacattggcaagcacaagaggaggctgccacaaactctgcctcagtggtggacaatgttacaacaggctgcttctttgatgcc 504  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45345323 ccacacacattggctagcacaagaggaggctgccacaaactctgcctcagtggtggacaatgttacaacaggctgcttctttgatgcc 45345236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45341356 - 45341300
Alignment:
Q  29 taggaacttattaactgaacccaaataaatagtaacattaaaataaatcccaacaat 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341356 taggaacttattaactgaacccaaataaatagtaacattaaaataaatcccaacaat 45341300  T

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Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 33361560 - 33361771
Alignment:
Q  17 gaacctagaaactaggaacttattaactgaacccaaataaatagtaacattaaaataaatcccaacaattcctcccctaaactgattcactgattcacgt 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||         |     
T  33361560 gaacctagaaactaggaacttattaactcaacccaaataaatagcaacattaaaataaattccaacaattcctcccctaaactgattcat--------gc 33361651  T
Q  117 atgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttctggaacacatcaagtttcaacggtttggtcataatatcagctact 216  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||| |||| || || ||||||||| |||||||||| |||| |||||||||||||    
T  33361652 atgcattcaatttaaatttggcacctcacaaactccaagttgatctcttgatttatgaaatacatcaagtgtcaacggtttagtcacaatatcagctact 33361751  T
Q  217 tgatttcttgtgttacaatg 236  Q
    ||||| ||||||||||||||    
T  33361752 tgattgcttgtgttacaatg 33361771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 33543465 - 33543249
Alignment:
Q  17 gaacctagaaactaggaacttattaactgaacccaaataaatagtaacattaaaataaatcccaacaattcctcccctaaactgattcactgattcacgt 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        |||| |     
T  33543465 gaacctagaaactaggaacttattaactcaacccaaataaatagcaacattaaaataaatcccaacaattcctcccctaaactga--------ttcatgc 33543374  T
Q  117 atgcattcagtttaaacttg--gcacctcacaaactccaagctgatctcttaatttctggaacacatcaagttt---caacggtttggtcataatatcag 211  Q
    ||||||||| |||||  | |  |||||||| |||||| ||| ||||||||| |||| ||||| ||||||||| |   |||||||||||||| ||||||||    
T  33543373 atgcattcaatttaatttggcagcacctcagaaactctaagttgatctcttgatttatggaatacatcaagtgtcaacaacggtttggtcacaatatcag 33543274  T
Q  212 ctacttgatttcttgtgttacaatg 236  Q
    ||||| |||| ||||||||||||||    
T  33543273 ctactcgattgcttgtgttacaatg 33543249  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 28302703 - 28302770
Alignment:
Q  17 gaacctagaaactaggaacttattaactgaacccaaataaatagtaacattaaaataaatcccaacaa 84  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28302703 gaacctagaaactaagaacttattaactgaacccaaataaatagtaacattaaaataaatccgaacaa 28302770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 30827744 - 30827793
Alignment:
Q  277 aaatggaaccttacatctatatgtttacttctaccatgcatgactggatt 326  Q
    ||||| || ||||||||||||||||||||| | |||||||| ||||||||    
T  30827744 aaatgaaatcttacatctatatgtttactttttccatgcataactggatt 30827793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 40609865 - 40609902
Alignment:
Q  289 acatctatatgtttacttctaccatgcatgactggatt 326  Q
    |||||||||||||| | |||||||||||||||||||||    
T  40609865 acatctatatgtttgcatctaccatgcatgactggatt 40609902  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 34190116 - 34190042
Alignment:
Q  270 tctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgt 344  Q
    |||||| ||||| ||||| ||||| |||||||| ||||| |||||||  ||||||||||| ||||||||||||||    
T  34190116 tctcaaaaaatgaaacctgacatcaatatgtttgcttcttccatgcaaaactggattttttgataatttaattgt 34190042  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 1374222 - 1374119
Alignment:
Q  256 tctttagtgagatctctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgt 355  Q
    |||||| | ||||| | |||||| |||||||| ||||| || ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||||| |    
T  1374222 tctttaattagatcacacaagaagtggaacctcacatcgatgtgtttgcttcttccgtgcataacaggatttttggacaacttaattgtggaactgttat 1374123  T
Q  356 caca 359  Q
    ||||    
T  1374122 caca 1374119  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 9579487 - 9579563
Alignment:
Q  277 aaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgtt 353  Q
    ||||| ||||| ||||| || ||||||||||| ||||| |  ||||||||||| || |||||||| |||||||||||    
T  9579487 aaatgaaacctcacatcaatgtgtttacttcttccatgtagaactggattttttgacaatttaatagttgaactgtt 9579563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 20545458 - 20545415
Alignment:
Q  283 aaccttacatctatatgtttacttctaccatgcatgactggatt 326  Q
    ||||| |||||||||||||| | |||||||||||||||||||||    
T  20545458 aacctgacatctatatgtttgcatctaccatgcatgactggatt 20545415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 34591232 - 34591153
Alignment:
Q  280 tggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcaca 359  Q
    |||||||| ||||| || |||||||| || |||||||||||||||||||| || || ||  ||| |||||| ||||||||    
T  34591232 tggaacctgacatcaatgtgtttactccttccatgcatgactggatttttcgacaactttgttgatgaactattgtcaca 34591153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 360
Target Start/End: Complemental strand, 47144794 - 47144702
Alignment:
Q  268 tctctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcacac 360  Q
    ||||| |||||||| ||||| ||||||||||| || | ||| |||||||| |||||||| || ||||  || |||| ||| || |||||||||    
T  47144794 tctcttaagaaatgaaacctcacatctatatgcttgcatctcccatgcataactggattcttagatagctttattgatgagctattgtcacac 47144702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 34600220 - 34600144
Alignment:
Q  295 atatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcacacataataacagt 371  Q
    |||||||| || || |||||||| ||||||||||| || | ||||| ||||||  |||| |||||||| ||||||||    
T  34600220 atatgtttgctccttccatgcattactggattttttgaaagtttaactgttgaggtgttatcacacattataacagt 34600144  T

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