View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6136_high_6 (Length: 441)
Name: NF6136_high_6
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 31 - 424
Target Start/End: Original strand, 54734459 - 54734836
Alignment:
| Q |
31 |
attgcaattgcaaagacgagaccgcacaagactggtttgcttattgccagtcaagttttgcatgatctgtgcttgtttccaactctgcataagctggctg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54734459 |
attgcaattgcaaagacgagaccgcacaagactggtttgcttattggcagtctagttttgcatgatctgtgcttgtttccaactctgcataagctggctg |
54734558 |
T |
|
| Q |
131 |
ccacaactccaaacctgctaagatatttcagtggtgtgctccaaaaccttccttttctttgcatccaaatcctacatttttcgggaacaatccgtttttc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54734559 |
ccacaactccaaacctgctaagatatttcagtggtgtgctccaaaaccttccttttctttgcgtccaaatcctacatttttcgggaacaat--------- |
54734649 |
T |
|
| Q |
231 |
cctagcatataaagtaaaatccttcaattttcgaagtgataaggtttcaggtcattataccttcactatatattggacggacgacgatgacgtcgcgtgt |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
54734650 |
------atataaagtaaaatacttcaattttcgaagtgataaggtttcaggtcattataccttcac--tatattggacggacgacaatgacgtcgcgcgt |
54734741 |
T |
|
| Q |
331 |
gtgatgatcatattgaaggcgtcatcacccgtttacaaaatcgctatcacagggcacatacc-tcactatataaccactagtgttgcgtgtaaat |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
54734742 |
gtgatgatcatattgaaggcgtcatcacccgtttacaaaatcgttatcccagggcacataccttcactatataaccactagtgttgcgtgtaaat |
54734836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University